Sun Jan 7 04:40:44 UTC 2024 I: starting to build kissplice/bullseye/arm64 on jenkins on '2024-01-07 04:40' Sun Jan 7 04:40:44 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/19377/console.log Sun Jan 7 04:40:44 UTC 2024 I: Downloading source for bullseye/kissplice=2.5.3-3 --2024-01-07 04:40:44-- http://cdn-fastly.deb.debian.org/debian/pool/main/k/kissplice/kissplice_2.5.3-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2243 (2.2K) [text/prs.lines.tag] Saving to: ‘kissplice_2.5.3-3.dsc’ 0K .. 100% 205M=0s 2024-01-07 04:40:44 (205 MB/s) - ‘kissplice_2.5.3-3.dsc’ saved [2243/2243] Sun Jan 7 04:40:44 UTC 2024 I: kissplice_2.5.3-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kissplice Binary: kissplice Architecture: any-amd64 any-arm64 any-mips64 any-mips64el any-ia64 any-ppc64 any-ppc64el any-sparc64 Version: 2.5.3-3 Maintainer: Debian Med Packaging Team Uploaders: David Parsons , Andreas Tille Homepage: http://kissplice.prabi.fr/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/kissplice Vcs-Git: https://salsa.debian.org/med-team/kissplice.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), dh-python, cmake, python3-dev, libpython3-stdlib, zlib1g-dev Package-List: kissplice deb science optional arch=any-amd64,any-arm64,any-mips64,any-mips64el,any-ia64,any-ppc64,any-ppc64el,any-sparc64 Checksums-Sha1: f00233e1e020c635db38f6c0948070a9f5e21b8b 10183268 kissplice_2.5.3.orig.tar.gz e9b893dd5484d63408d78392e608ad2d114b2eb3 13528 kissplice_2.5.3-3.debian.tar.xz Checksums-Sha256: 6d0314e40815246043895cb05ef508d537ca9f3eadc31869006c10a0aafa4191 10183268 kissplice_2.5.3.orig.tar.gz e16f899b6b8b73c66a89b6e59d871b7c3335172990d5c89740d60cd8a28389fa 13528 kissplice_2.5.3-3.debian.tar.xz Files: 594e609efff3a50a9672275ce305a4d7 10183268 kissplice_2.5.3.orig.tar.gz e918c28538c33e959c07f2adeed09989 13528 kissplice_2.5.3-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl+WWEMUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEXOQ//WDJii8IO2rKcQV1gPhgIJXhkPujp u1gKEOtkKXu6FCWAuL7Ryd7CalR2X7Bf5i6Hh7YY6Jd3XIVHZSpg5eVv6Mo5QEHr lZCRiWV9Ovuow6YU7SbykbP86fNi/Nm2zAOhuBhZJgj01BrTI9l4lHfhiesTZRwh ljD5Wv2G18CtJPaw3gYkjiJcS03Ytpdcoah7rZPD692vS9NOt7IF1jzhSY40zrF+ RYr5U824qD8Z6WQunTnLtvEvn++AOggFxgz4BVHaFjFwFWsmt/aoe2krDWob6Lf2 XIu4jcLmhJEtO5R+hT9pSpB1hlolC9KtFB48pAEz21Ra/NI3/tfZTh/awSJ6LDfL ti3u9e0N+aRPuq+uXEFXGhqBaNxLlmkeear0rAutCbm77HKCF7UBY1jOtDWbJe7U 2NW4hHyPvvDDGUrNnNtbakQ+SJRe0D1zulFfwUozz/ajO5yKiDDxH6g/s/BZ6XLu VEuc9q096AGrRHkpy3XWhU+iZsw+jjr7CHj250gVSPT3eKRaFz+AMCGZZ+VXGcio x1hRq2NfyMbwDIE3xuHh9rn91p2DfIjbU6M0O6ol1TUHGqKVIrVOdvgMvJd7oLx6 lntHBBC8PWpu+Tfq7SjQXMvvJm4WhhO03/tOmZZNPMo+xX7g+azkpAm58kbKY60Y yOkDAcpZDQykc28= =wiSq -----END PGP SIGNATURE----- Sun Jan 7 04:40:44 UTC 2024 I: Checking whether the package is not for us Sun Jan 7 04:40:44 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sun Jan 7 04:40:44 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sun Jan 7 04:47:08 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 7 23:03:46 -12 2025 I: pbuilder-time-stamp: 1739012626 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kissplice_2.5.3-3.dsc] I: copying [./kissplice_2.5.3.orig.tar.gz] I: copying [./kissplice_2.5.3-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.Y5GBaU48/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 26 05:01:55 2020 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kissplice_2.5.3-3.dsc dpkg-source: info: extracting kissplice in kissplice-2.5.3 dpkg-source: info: unpacking kissplice_2.5.3.orig.tar.gz dpkg-source: info: unpacking kissplice_2.5.3-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-bcalm-install.patch dpkg-source: info: applying tests-2to3.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1401137/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='b6614776827b4decb0e8b8045596f721' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1401137' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KAy7HBvY/pbuilderrc_Nwv4 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KAy7HBvY/b1 --logfile b1/build.log kissplice_2.5.3-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.104:3128' I: uname -a Linux codethink03-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Mar 27 2022 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 64856 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 182496 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 93744 Apr 10 2022 gzip -rwxr-xr-x 1 root root 18440 Nov 7 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 157864 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jan 20 2022 more -rwsr-xr-x 1 root root 51360 Jan 20 2022 mount -rwxr-xr-x 1 root root 14496 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 8 15:47 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jan 20 2022 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jan 20 2022 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/1401137/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, cmake, python3-dev, libpython3-stdlib, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17734 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on libpython3-stdlib; however: Package libpython3-stdlib is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 38.7 MB of archives. After unpacking 157 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8+deb11u1 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2+deb11u5 [84.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 tzdata all 2021a-1+deb11u10 [286 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2+deb11u2 [93.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3+deb11u1 [273 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3+deb11u1 [123 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3+deb11u1 [69.2 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7+deb11u4 [629 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+deb11u1 [320 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1+deb11u1 [69.4 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1+deb11u1 [105 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3+deb11u1 [222 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+deb11u9 [326 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2+deb11u1 [3673 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2+deb11u5 [128 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2+deb11u2 [189 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Fetched 38.7 MB in 0s (145 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17734 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_arm64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. 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Setting up libexpat1:arm64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18601 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... 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Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../54-libpython3-dev_3.9.2-3_arm64.deb ... Unpacking libpython3-dev:arm64 (3.9.2-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../55-zlib1g-dev_1%3a1.2.11.dfsg-2+deb11u2_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-2+deb11u2) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../56-python3.9-dev_3.9.2-1_arm64.deb ... Unpacking python3.9-dev (3.9.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../57-python3-dev_3.9.2-3_arm64.deb ... Unpacking python3-dev (3.9.2-3) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3+deb11u1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3+deb11u1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 8 11:04:10 UTC 2025. Universal Time is now: Sat Feb 8 11:04:10 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:arm64 (1.40.0-2) ... Setting up libexpat1-dev:arm64 (2.2.10-2+deb11u5) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:arm64 (6.2+20201114-2+deb11u2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libjsoncpp24:arm64 (1.9.4-4) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:arm64 (1.4.1-2) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:arm64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libprocps8:arm64 (2:3.3.17-5) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:arm64 (3.4.3-2+deb11u1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3+deb11u1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:arm64 (7.74.0-1.3+deb11u9) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:arm64 (3.9.2-1) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:arm64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:arm64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kissplice-2.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kissplice_2.5.3-3_source.changes dpkg-buildpackage: info: source package kissplice dpkg-buildpackage: info: source version 2.5.3-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3' dh_auto_clean rm -rf bcalm/README.md tests/functional_tests/__pycache__/ tests/integration_tests/__pycache__/ make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3' dh_auto_configure -- -DCMAKE_INSTALL_LIBEXECDIR=lib/ cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_INSTALL_LIBEXECDIR=lib/ .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- gatb-core is here '/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core' -- CppUnit NOT FOUND -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - done -- Options: -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation -- SOVERSION: 10.2.1 -- SOVERSION_TOOLS: 10.0.4 -- SOVERSION_CXX: 13.0.0 -- SOVERSION_F: 10.0.4 -- SOVERSION_HL: 10.1.1 -- SOVERSION_HL_CXX: 11.1.0 -- SOVERSION_HL_F: 10.0.3 -- Check for STD namespace -- Check for STD namespace - found -- Looking for ceil in m; -- Looking for ceil in m; - found -- Looking for dlopen in dl;m -- Looking for dlopen in dl;m - found -- Looking for WSAStartup in ws2_32;m;dl -- Looking for WSAStartup in ws2_32;m;dl - not found -- Looking for gethostbyname in wsock32;m;dl -- Looking for gethostbyname in wsock32;m;dl - not found -- Looking for gethostname in ucb;m;dl -- Looking for gethostname in ucb;m;dl - not found -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Performing Other Test STDC_HEADERS - Success CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFiles.cmake:120 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: m;dl For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): bcalm/gatb-core/gatb-core/thirdparty/hdf5/config/cmake_ext_mod/ConfigureChecks.cmake:192 (CHECK_INCLUDE_FILES) bcalm/gatb-core/gatb-core/thirdparty/hdf5/config/cmake_ext_mod/ConfigureChecks.cmake:201 (CHECK_INCLUDE_FILE_CONCAT) bcalm/gatb-core/gatb-core/thirdparty/hdf5/config/cmake/ConfigureChecks.cmake:5 (include) bcalm/gatb-core/gatb-core/thirdparty/hdf5/CMakeLists.txt:383 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for include file sys/resource.h -- Looking for include file sys/resource.h - found -- Looking for include files sys/resource.h, sys/time.h -- Looking for include files sys/resource.h, sys/time.h - found -- Looking for 3 include files sys/resource.h, ..., unistd.h -- Looking for 3 include files sys/resource.h, ..., unistd.h - found -- Looking for 4 include files sys/resource.h, ..., sys/ioctl.h -- Looking for 4 include files sys/resource.h, ..., sys/ioctl.h - found -- Looking for 5 include files sys/resource.h, ..., sys/stat.h -- Looking for 5 include files sys/resource.h, ..., sys/stat.h - found -- Looking for 6 include files sys/resource.h, ..., sys/socket.h -- Looking for 6 include files sys/resource.h, ..., sys/socket.h - found -- Looking for 7 include files sys/resource.h, ..., sys/types.h -- Looking for 7 include files sys/resource.h, ..., sys/types.h - found -- Looking for 8 include files sys/resource.h, ..., stddef.h -- Looking for 8 include files sys/resource.h, ..., stddef.h - found -- Looking for 9 include files sys/resource.h, ..., setjmp.h -- Looking for 9 include files sys/resource.h, ..., setjmp.h - found -- Looking for 10 include files sys/resource.h, ..., features.h -- Looking for 10 include files sys/resource.h, ..., features.h - found -- Looking for 11 include files sys/resource.h, ..., dirent.h -- Looking for 11 include files sys/resource.h, ..., dirent.h - found -- Looking for 12 include files sys/resource.h, ..., stdint.h -- Looking for 12 include files sys/resource.h, ..., stdint.h - found -- Looking for C++ include stdint.h -- Looking for C++ include stdint.h - found -- Looking for 13 include files sys/resource.h, ..., mach/mach_time.h -- Looking for 13 include files sys/resource.h, ..., mach/mach_time.h - not found -- Looking for 13 include files sys/resource.h, ..., io.h -- Looking for 13 include files sys/resource.h, ..., io.h - not found -- Looking for 13 include files sys/resource.h, ..., winsock2.h -- Looking for 13 include files sys/resource.h, ..., winsock2.h - not found -- Looking for 13 include files sys/resource.h, ..., sys/timeb.h -- Looking for 13 include files sys/resource.h, ..., sys/timeb.h - found -- Looking for 14 include files sys/resource.h, ..., globus/common.h -- Looking for 14 include files sys/resource.h, ..., globus/common.h - not found -- Looking for 14 include files sys/resource.h, ..., pdb.h -- Looking for 14 include files sys/resource.h, ..., pdb.h - not found -- Looking for 14 include files sys/resource.h, ..., pthread.h -- Looking for 14 include files sys/resource.h, ..., pthread.h - found -- Looking for 15 include files sys/resource.h, ..., srbclient.h -- Looking for 15 include files sys/resource.h, ..., srbclient.h - not found -- Looking for 15 include files sys/resource.h, ..., string.h -- Looking for 15 include files sys/resource.h, ..., string.h - found -- Looking for 16 include files sys/resource.h, ..., strings.h -- Looking for 16 include files sys/resource.h, ..., strings.h - found -- Looking for 17 include files sys/resource.h, ..., stdlib.h -- Looking for 17 include files sys/resource.h, ..., stdlib.h - found -- Looking for 18 include files sys/resource.h, ..., memory.h -- Looking for 18 include files sys/resource.h, ..., memory.h - found -- Looking for 19 include files sys/resource.h, ..., dlfcn.h -- Looking for 19 include files sys/resource.h, ..., dlfcn.h - found -- Looking for 20 include files sys/resource.h, ..., inttypes.h -- Looking for 20 include files sys/resource.h, ..., inttypes.h - found -- Looking for 21 include files sys/resource.h, ..., netinet/in.h -- Looking for 21 include files sys/resource.h, ..., netinet/in.h - found -- Performing TEST_LFS_WORKS... yes -- Performing Other Test HAVE_OFF64_T - Success -- Looking for lseek64 -- Looking for lseek64 - found -- Looking for fseeko64 -- Looking for fseeko64 - found -- Looking for ftello64 -- Looking for ftello64 - found -- Looking for ftruncate64 -- Looking for ftruncate64 - found -- Looking for fseeko -- Looking for fseeko - found -- Looking for ftello -- Looking for ftello - found -- Performing Other Test HAVE_STAT64_STRUCT - Success -- Looking for fstat64 -- Looking for fstat64 - found -- Looking for stat64 -- Looking for stat64 - found -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of int -- Check size of int - done -- Check size of unsigned -- Check size of unsigned - done -- Check size of long -- Check size of long - done -- Check size of long long -- Check size of long long - done -- Check size of __int64 -- Check size of __int64 - failed -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Check size of long double -- Check size of long double - done -- Check size of int8_t -- Check size of int8_t - done -- Check size of uint8_t -- Check size of uint8_t - done -- Check size of int_least8_t -- Check size of int_least8_t - done -- Check size of uint_least8_t -- Check size of uint_least8_t - done -- Check size of int_fast8_t -- Check size of int_fast8_t - done -- Check size of uint_fast8_t -- Check size of uint_fast8_t - done -- Check size of int16_t -- Check size of int16_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Check size of int_least16_t -- Check size of int_least16_t - done -- Check size of uint_least16_t -- Check size of uint_least16_t - done -- Check size of int_fast16_t -- Check size of int_fast16_t - done -- Check size of uint_fast16_t -- Check size of uint_fast16_t - done -- Check size of int32_t -- Check size of int32_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of int_least32_t -- Check size of int_least32_t - done -- Check size of uint_least32_t -- Check size of uint_least32_t - done -- Check size of int_fast32_t -- Check size of int_fast32_t - done -- Check size of uint_fast32_t -- Check size of uint_fast32_t - done -- Check size of int64_t -- Check size of int64_t - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of int_least64_t -- Check size of int_least64_t - done -- Check size of uint_least64_t -- Check size of uint_least64_t - done -- Check size of int_fast64_t -- Check size of int_fast64_t - done -- Check size of uint_fast64_t -- Check size of uint_fast64_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of ssize_t -- Check size of ssize_t - done -- Check size of ptrdiff_t -- Check size of ptrdiff_t - done -- Check size of off_t -- Check size of off_t - done -- Check size of off64_t -- Check size of off64_t - done -- Looking for 22 include files sys/resource.h, ..., stdbool.h -- Looking for 22 include files sys/resource.h, ..., stdbool.h - found -- Check size of _Bool -- Check size of _Bool - done -- Performing Other Test DEV_T_IS_SCALAR - Success -- Looking for CLOCK_MONOTONIC -- Looking for CLOCK_MONOTONIC - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Performing Other Test HAVE_TM_GMTOFF - Success -- Performing Other Test HAVE___TM_GMTOFF - Failed -- Performing Other Test HAVE_STRUCT_TIMEZONE - Success -- Performing Other Test GETTIMEOFDAY_GIVES_TZ - Success -- Performing Other Test TIME_WITH_SYS_TIME - Success -- Performing Other Test HAVE_TM_ZONE - Failed -- Performing Other Test HAVE_STRUCT_TM_TM_ZONE - Failed -- Performing Other Test HAVE_TIMEZONE - Success -- Performing Other Test HAVE_STAT_ST_BLOCKS - Success -- Looking for ioctl -- Looking for ioctl - found -- Performing Other Test HAVE_STRUCT_VIDEOCONFIG - Failed -- Performing Other Test HAVE_STRUCT_TEXT_INFO - Failed -- Looking for _getvideoconfig -- Looking for _getvideoconfig - not found -- Looking for gettextinfo -- Looking for gettextinfo - not found -- Looking for _scrsize -- Looking for _scrsize - not found -- Looking for GetConsoleScreenBufferInfo -- Looking for GetConsoleScreenBufferInfo - not found -- Looking for TIOCGWINSZ -- Looking for TIOCGWINSZ - found -- Looking for TIOCGETD -- Looking for TIOCGETD - found -- Looking for getpwuid -- Looking for getpwuid - found -- Looking for alarm -- Looking for alarm - found -- Looking for fork -- Looking for fork - found -- Looking for frexpf -- Looking for frexpf - found -- Looking for frexpl -- Looking for frexpl - found -- Looking for gethostname -- Looking for gethostname - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for lstat -- Looking for lstat - found -- Looking for rand_r -- Looking for rand_r - found -- Looking for random -- Looking for random - found -- Looking for setsysinfo -- Looking for setsysinfo - not found -- Looking for signal -- Looking for signal - found -- Looking for longjmp -- Looking for longjmp - found -- Looking for setjmp -- Looking for setjmp - found -- Looking for siglongjmp -- Looking for siglongjmp - found -- Looking for sigsetjmp -- Looking for sigsetjmp - not found -- Looking for sigprocmask -- Looking for sigprocmask - found -- Looking for snprintf -- Looking for snprintf - found -- Looking for srandom -- Looking for srandom - found -- Looking for strdup -- Looking for strdup - found -- Looking for symlink -- Looking for symlink - found -- Looking for system -- Looking for system - found -- Looking for tmpfile -- Looking for tmpfile - found -- Looking for asprintf -- Looking for asprintf - found -- Looking for vasprintf -- Looking for vasprintf - found -- Looking for waitpid -- Looking for waitpid - found -- Looking for vsnprintf -- Looking for vsnprintf - found -- Performing Other Test VSNPRINTF_WORKS - Success -- Looking for sigsetjmp -- Looking for sigsetjmp - found -- Performing Other Test HAVE_ATTRIBUTE - Success -- Performing Other Test HAVE_C99_FUNC - Success -- Performing Other Test HAVE_FUNCTION - Success -- Performing Other Test HAVE_C99_DESIGNATED_INITIALIZER - Success -- Performing Other Test SYSTEM_SCOPE_THREADS - Success -- Performing Other Test HAVE_SOCKLEN_T - Success -- Performing Other Test CXX_HAVE_OFFSETOF - Success -- Performing CXX Test OLD_HEADER_FILENAME - Failed -- Performing CXX Test H5_NO_NAMESPACE - Failed -- Performing CXX Test H5_NO_STD - Failed -- Performing CXX Test BOOL_NOTDEFINED - Failed -- Performing CXX Test NO_STATIC_CAST - Failed -- Performing Other Test HAVE_INLINE - Success -- Performing Other Test HAVE___INLINE__ - Success -- Performing Other Test HAVE___INLINE - Success -- Checking for appropriate format for 64 bit long: -- Checking for appropriate format for 64 bit long: found "l" -- Looking for difftime -- Looking for difftime - found -- Looking for clock_gettime -- Looking for clock_gettime - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for clock_gettime in posix4 -- Looking for clock_gettime in posix4 - not found -- Performing TEST_DIRECT_VFD_WORKS... no -- Checking IF your system converts long double to (unsigned) long values with special algorithm... no -- Checking IF your system can convert (unsigned) long to long double values with special algorithm... no -- Checking IF correctly converting long double to (unsigned) long long values... yes -- Checking IF correctly converting (unsigned) long long to long double values... yes -- Checking IF alignment restrictions are strictly enforced... yes -- Could NOT find ZLIB (missing: ZLIB_DIR) -- Filter ZLIB is ON CMake Warning (dev) at bcalm/gatb-core/gatb-core/thirdparty/hdf5/CMakeLists.txt:668 (set): implicitly converting 'INTEGER' to 'STRING' type. This warning is for project developers. Use -Wno-dev to suppress it. DYNAMIC BINARIES for gatb-h5dump -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3' dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kissplice-2.5.3 -B/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/DependInfo.cmake --color= make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/DependInfo.cmake --color= make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/depend.internal". make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/DependInfo.cmake --color= make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend Scanning dependencies of target H5detect make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend.internal". Scanning dependencies of target H5make_libsettings make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 0%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/H5detect.c.o Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend.internal". Scanning dependencies of target hdf5_postbuild make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend.internal". make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build Scanning dependencies of target thirdparty_copy cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/H5detect.dir/H5detect.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5detect.c make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend.internal". Scanning dependencies of target ks_kissreadsSplice Scanning dependencies of target ks_kissreadsSNPS make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build [ 0%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5make_libsettings.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/json make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/commons.c.o [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/commons.c make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/commons.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/commons.c [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF/ cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/extension_algorithm.c [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/extension_algorithm.c [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/depend.internal". Scanning dependencies of target ks_clean_duplicates cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/interface_libchash.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/json/json.hpp /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/json/ make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/libchash.c Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/depend.internal". make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/depend.internal". Scanning dependencies of target ks_bubble_enumeration make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 1%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o [ 1%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CleanDuplicates.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.cpp [ 1%] Built target thirdparty_copy make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 1%] Linking C executable ../../../../../../lib/kissplice/H5make_libsettings cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/H5make_libsettings.dir/link.txt --verbose=1 Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/depend.internal". Scanning dependencies of target ks_run_modules /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o -o ../../../../../../lib/kissplice/H5make_libsettings cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2pkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2private.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 1%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/run.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/run.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/run.cpp make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2public.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 1%] Built target H5make_libsettings make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend [ 1%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o [ 2%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/outputs.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/interface_libchash.c make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= [ 2%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/coherent_algorithm.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/depend.internal". Scanning dependencies of target ks_error_removal make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/libchash.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 3%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/ErrorRemoval.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/couple.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/couple.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/fragment_index.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/outputs.c [ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 In file included from /build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.cpp:61: /build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.h:124:1: warning: 'typedef' was ignored in this declaration 124 | typedef struct Path { | ^~~~~~~ cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/kissReads.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Edefin.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Einit.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/list.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/list.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/list.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epubgen.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/tree.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/tree.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eterm.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDcore.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDdirect.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDfamily.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/coherent_algorithm.c [ 4%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/CEdge.cpp.o [ 4%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDlog.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/couple.c [ 4%] Linking C executable ../../../lib/kissplice/ks_kissreadsSplice cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSplice.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpi.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSplice.dir/commons.c.o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o CMakeFiles/ks_kissreadsSplice.dir/list.c.o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSplice -lm -lz cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpio.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmulti.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/fragment_index.c [ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/kissReads.c [ 5%] Built target ks_kissreadsSplice cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/depend.internal". Scanning dependencies of target ks_print_bcc make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDsec2.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 6%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/Utils.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp [ 7%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/PrintBcc.cpp [ 7%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CycleCompression.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDstdio.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDwindows.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 7%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/list.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/list.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FOprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 7%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -c /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src/tree.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 8%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NGraph.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NGraph.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 8%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp [ 8%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CycleCompression.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 9%] Linking C executable ../../../lib/kissplice/ks_kissreadsSNPS cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSNPS.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSNPS -lm -lz cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 10%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NGraph.cpp make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 10%] Built target ks_kissreadsSNPS cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 10%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CGraph.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CGraph.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 In file included from /build/reproducible-path/kissplice-2.5.3/modules/PrintBcc.cpp:51: /build/reproducible-path/kissplice-2.5.3/modules/BubbleEnumeration.h:124:1: warning: 'typedef' was ignored in this declaration 124 | typedef struct Path { | ^~~~~~~ cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 10%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HPprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ipkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 10%] Linking CXX executable ../lib/kissplice/ks_error_removal cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_error_removal.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Iprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -o ../lib/kissplice/ks_error_removal cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ipublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 10%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp [ 11%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NNode.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NNode.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NNode.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Linking CXX executable ../lib/kissplice/ks_print_bcc cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_print_bcc.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -o ../lib/kissplice/ks_print_bcc cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MMprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Built target ks_error_removal cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MMpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CGraph.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/SplitBcc.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshared.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLextern.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Built target ks_print_bcc cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/Utils.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ppkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ppublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RCprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Linking C executable ../../../../../../lib/kissplice/H5detect cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/H5detect.dir/link.txt --verbose=1 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/H5detect.dir/H5detect.c.o -o ../../../../../../lib/kissplice/H5detect cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp [ 11%] Built target H5detect make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Generating ../H5lib_settings.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 && /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice/H5make_libsettings > /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5lib_settings.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5STprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Generating ../H5Tinit.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && ../../../../../../lib/kissplice/H5detect > /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5Tinit.c [ 11%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CycleCompression.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend.internal". cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5TSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp [ 11%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NGraph.cpp [ 11%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CGraph.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5VMprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 12%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NNode.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5WBprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5api_adpt.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 12%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5overflow.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 Scanning dependencies of target hdf5 make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build [ 12%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5private.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5public.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 12%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5version.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 13%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5checksum.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5checksum.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5checksum.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5win32defs.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 13%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/CEdge.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/hdf5.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5pubconf.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 13%] Built target hdf5_postbuild [ 14%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/LabelledCEdge.cpp [ 14%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o -c /build/reproducible-path/kissplice-2.5.3/modules/NNode.cpp [ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5dbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5dbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5dbg.c [ 14%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o cd 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/build/reproducible-path/kissplice-2.5.3/modules/Utils.cpp [ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5system.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5system.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5system.c [ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5timer.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5timer.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5timer.c [ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5trace.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5trace.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5trace.c [ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5A.c.o [ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Abtree2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5A.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5A.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Abtree2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Abtree2.c [ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Adense.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Adense.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Adense.c [ 15%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Adeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Adeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Adeprec.c [ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Aint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Aint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aint.c [ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Atest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Atest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Atest.c [ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5AC.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5AC.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5AC.c [ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B.c [ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2.c [ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2cache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2cache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2cache.c [ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2dbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2dbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2dbg.c [ 17%] Linking CXX executable ../lib/kissplice/ks_bubble_enumeration cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_bubble_enumeration.dir/link.txt --verbose=1 [ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2hdr.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2hdr.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2hdr.c /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -o ../lib/kissplice/ks_bubble_enumeration [ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2int.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2int.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2int.c [ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2stat.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2stat.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2stat.c [ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2test.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2test.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2test.c [ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Bdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Bdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bdbg.c [ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Bcache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Bcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bcache.c [ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5D.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5D.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5D.c [ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dcompact.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dcompact.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dcompact.c [ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dbtree.c.o make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dbtree.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dbtree.c [ 19%] Built target ks_bubble_enumeration [ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dchunk.c.o cd 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CMakeFiles/hdf5.dir/H5Dchunk.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dchunk.c [ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dcontig.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dcontig.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dcontig.c [ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ddbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ddbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ddbg.c [ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ddeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ddeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ddeprec.c [ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Defl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Defl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Defl.c [ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dfill.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dfill.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dfill.c [ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dint.c [ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dio.c.o [ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dlayout.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dlayout.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dlayout.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dio.c [ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dmpio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dmpio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dmpio.c [ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Doh.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Doh.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Doh.c [ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dscatgath.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dscatgath.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dscatgath.c [ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dselect.c.o cd 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CMakeFiles/hdf5.dir/H5Dselect.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dselect.c [ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5E.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5E.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5E.c [ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dtest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dtest.c [ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Edeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Edeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Edeprec.c [ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Eint.c.o [ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5F.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Eint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eint.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5F.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5F.c [ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fint.c [ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Faccum.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Faccum.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Faccum.c [ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fcwfs.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fcwfs.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fcwfs.c [ 25%] Linking CXX executable ../lib/kissplice/ks_run_modules cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_run_modules.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_run_modules.dir/run.cpp.o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o CMakeFiles/ks_run_modules.dir/NNode.cpp.o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -o ../lib/kissplice/ks_run_modules [ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fdbg.c make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 25%] Built target ks_run_modules [ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fefc.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fefc.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fefc.c [ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ffake.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ffake.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ffake.c [ 27%] Linking CXX executable ../lib/kissplice/ks_clean_duplicates cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_clean_duplicates.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -o ../lib/kissplice/ks_clean_duplicates [ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fio.c [ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fmount.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fmount.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fmount.c [ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fmpi.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fmpi.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fmpi.c [ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fquery.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fquery.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fquery.c make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsfile.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fsfile.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fsfile.c [ 28%] Built target ks_clean_duplicates [ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsuper.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fsuper.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fsuper.c [ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsuper_cache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fsuper_cache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fsuper_cache.c [ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ftest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ftest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ftest.c [ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FD.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FD.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FD.c [ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDcore.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDcore.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDcore.c [ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDdirect.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDdirect.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDdirect.c [ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDfamily.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDfamily.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDfamily.c [ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDint.c [ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDlog.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDlog.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDlog.c [ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmpi.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDmpi.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpi.c [ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmpio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDmpio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpio.c [ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmulti.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDmulti.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmulti.c [ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDsec2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDsec2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDsec2.c [ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDspace.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDspace.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDspace.c [ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDstdio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDstdio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDstdio.c [ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FS.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FS.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FS.c [ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FScache.c.o [ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 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-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FSdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSdbg.c [ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSsection.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations 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-fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FSstat.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSstat.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 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CMakeFiles/hdf5.dir/H5G.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5G.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes 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-Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gcache.c [ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gcompact.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gcompact.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gcompact.c [ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gdense.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gdense.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gdense.c [ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gdeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations 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-Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gent.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gent.c [ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gint.c [ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Glink.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Glink.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Glink.c [ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gloc.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gloc.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gloc.c [ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gname.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gname.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gname.c [ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gnode.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gnode.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gnode.c [ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gobj.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gobj.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gobj.c [ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Goh.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Goh.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Goh.c [ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Groot.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Groot.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Groot.c [ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gstab.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gstab.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gstab.c [ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gtest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gtest.c [ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gtraverse.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gtraverse.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gtraverse.c [ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HF.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HF.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HF.c [ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFbtree2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFbtree2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFbtree2.c [ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdbg.c.o [ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFcache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFdbg.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFcache.c [ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdblock.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFdblock.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFdblock.c [ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdtable.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFdtable.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFdtable.c [ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFhdr.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFhdr.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFhdr.c [ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFhuge.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFhuge.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFhuge.c [ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFiblock.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFiblock.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFiblock.c [ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFiter.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFiter.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFiter.c [ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFman.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFman.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFman.c [ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFsection.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFsection.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFsection.c [ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFstat.c.o [ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFspace.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFstat.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFstat.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFspace.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFspace.c [ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFtest.c.o [ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFtiny.c.o cd 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CMakeFiles/hdf5.dir/H5HFtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFtest.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFtiny.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFtiny.c [ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HG.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HG.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HG.c [ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGcache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HGcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGcache.c [ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HGdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGdbg.c [ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGquery.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HLcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLcache.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HL.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HL.c [ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HLdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLdbg.c [ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HLint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLint.c [ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MF.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MF.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MF.c [ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFaggr.c.o [ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 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-D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MFdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFdbg.c [ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFsection.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MFsection.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFsection.c [ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MP.c.o [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MPtest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MPtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPtest.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MP.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MP.c [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5O.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5O.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5O.c [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oainfo.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oainfo.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oainfo.c [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oalloc.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oalloc.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oalloc.c [ 45%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oattr.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oattr.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oattr.c [ 45%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oattribute.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oattribute.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oattribute.c [ 45%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Obogus.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Obogus.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Obogus.c [ 45%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Obtreek.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Obtreek.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Obtreek.c [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ocache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ocache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ocache.c [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ocopy.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ocopy.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ocopy.c [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Odbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Odbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odbg.c [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ochunk.c.o [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Odrvinfo.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ochunk.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ochunk.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ocont.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ocont.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ocont.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Odrvinfo.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odrvinfo.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Odtype.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Odtype.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odtype.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oefl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oefl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oefl.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ofill.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ofill.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ofill.c [ 48%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oginfo.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oginfo.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oginfo.c [ 48%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Olayout.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Olayout.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Olayout.c [ 48%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Olinfo.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Olinfo.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Olinfo.c [ 48%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Olink.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Olink.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Olink.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Omessage.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Omessage.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Omessage.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Omtime.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Omtime.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Omtime.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oname.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oname.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oname.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Onull.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Onull.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Onull.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Opline.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Opline.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opline.c [ 50%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Orefcount.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Orefcount.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Orefcount.c [ 50%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Osdspace.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Osdspace.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Osdspace.c [ 50%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oshared.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oshared.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshared.c [ 50%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oshmesg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oshmesg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshmesg.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ostab.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ostab.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ostab.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Otest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Otest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Otest.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ounknown.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ounknown.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ounknown.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5P.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5P.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5P.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pacpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pacpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pacpl.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdcpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdcpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdcpl.c [ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdapl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdapl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdapl.c [ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdxpl.c.o [ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdeprec.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdxpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdxpl.c [ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pfcpl.c.o [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pfapl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pfcpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pfcpl.c [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pfmpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pfapl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pfapl.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pfmpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pfmpl.c [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pgcpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pgcpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pgcpl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pint.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Plapl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Plapl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Plapl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Plcpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Plcpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Plcpl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pocpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pocpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pocpl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pocpypl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pocpypl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pocpypl.c [ 55%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pstrcpl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pstrcpl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pstrcpl.c [ 55%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ptest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ptest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ptest.c [ 55%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5PL.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5PL.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PL.c [ 55%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5R.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5R.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5R.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Rdeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Rdeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rdeprec.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5RC.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5RC.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RC.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5RS.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5RS.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RS.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5S.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5S.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5S.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Sall.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Sall.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sall.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Sdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Sdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sdbg.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Shyper.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Shyper.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Shyper.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Smpio.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Smpio.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Smpio.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Snone.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Snone.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Snone.c [ 58%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Spoint.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Spoint.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spoint.c [ 58%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Sselect.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Sselect.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sselect.c [ 58%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Stest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Stest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Stest.c [ 58%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SM.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SM.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SM.c [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMbtree2.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMbtree2.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMbtree2.c [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMcache.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMcache.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMcache.c [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMmessage.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMmessage.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMmessage.c [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMtest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMtest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMtest.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5T.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5T.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5T.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tarray.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tarray.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tarray.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tbit.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tbit.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tbit.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tcommit.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tcommit.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tcommit.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tcompound.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tcompound.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tcompound.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tconv.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tconv.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tconv.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tcset.c.o [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tdbg.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tcset.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tcset.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tdbg.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tdbg.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tdeprec.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tdeprec.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tdeprec.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tfields.c.o [ 62%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tenum.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tenum.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tenum.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tfields.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tfields.c [ 62%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tfixed.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tfixed.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tfixed.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tnative.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tnative.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tnative.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tfloat.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tfloat.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tfloat.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Toffset.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Toffset.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Toffset.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Toh.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Toh.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Toh.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Topaque.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Topaque.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Topaque.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Torder.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Torder.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Torder.c [ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tpad.c.o [ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tprecis.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tpad.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpad.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tprecis.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tprecis.c [ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tstrpad.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tstrpad.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tstrpad.c [ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tvisit.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tvisit.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tvisit.c [ 65%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tvlen.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tvlen.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tvlen.c [ 65%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Z.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Z.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Z.c [ 65%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zdeflate.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -DH5_ZLIB_HEADER=\"zlib.h\" -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zdeflate.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zdeflate.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Znbit.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Znbit.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Znbit.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zfletcher32.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zfletcher32.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zfletcher32.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zscaleoffset.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zscaleoffset.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zscaleoffset.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zshuffle.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zshuffle.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zshuffle.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zszip.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zszip.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zszip.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ztrans.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ztrans.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ztrans.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5C.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5C.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5C.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5CS.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5CS.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CS.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FL.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FL.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FL.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FO.c.o [ 68%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HP.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FO.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FO.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE 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CMakeFiles/hdf5.dir/H5I.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5I.c [ 68%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Itest.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Itest.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Itest.c [ 68%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5L.c.o [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Lexternal.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src 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-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5L.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5L.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MM.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MM.c [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SL.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SL.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SL.c [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5ST.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5ST.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ST.c [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5TS.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5TS.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5TS.c [ 70%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5VM.c.o cd 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CMakeFiles/hdf5.dir/H5VM.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5VM.c [ 70%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5WB.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5WB.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5WB.c [ 70%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/__/H5Tinit.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/__/H5Tinit.c.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5Tinit.c [ 70%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/__/H5lib_settings.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/__/H5lib_settings.c.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5lib_settings.c [ 71%] Linking C static library ../../../lib/None/libhdf5.a 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CMakeFiles/hdf5.dir/H5Tenum.c.o CMakeFiles/hdf5.dir/H5Tfields.c.o CMakeFiles/hdf5.dir/H5Tfixed.c.o CMakeFiles/hdf5.dir/H5Tfloat.c.o CMakeFiles/hdf5.dir/H5Tnative.c.o CMakeFiles/hdf5.dir/H5Toffset.c.o CMakeFiles/hdf5.dir/H5Toh.c.o CMakeFiles/hdf5.dir/H5Topaque.c.o CMakeFiles/hdf5.dir/H5Torder.c.o CMakeFiles/hdf5.dir/H5Tpad.c.o CMakeFiles/hdf5.dir/H5Tprecis.c.o CMakeFiles/hdf5.dir/H5Tstrpad.c.o CMakeFiles/hdf5.dir/H5Tvisit.c.o CMakeFiles/hdf5.dir/H5Tvlen.c.o CMakeFiles/hdf5.dir/H5Z.c.o CMakeFiles/hdf5.dir/H5Zdeflate.c.o CMakeFiles/hdf5.dir/H5Zfletcher32.c.o CMakeFiles/hdf5.dir/H5Znbit.c.o CMakeFiles/hdf5.dir/H5Zscaleoffset.c.o CMakeFiles/hdf5.dir/H5Zshuffle.c.o CMakeFiles/hdf5.dir/H5Zszip.c.o CMakeFiles/hdf5.dir/H5Ztrans.c.o CMakeFiles/hdf5.dir/H5C.c.o CMakeFiles/hdf5.dir/H5CS.c.o CMakeFiles/hdf5.dir/H5FL.c.o CMakeFiles/hdf5.dir/H5FO.c.o CMakeFiles/hdf5.dir/H5HP.c.o CMakeFiles/hdf5.dir/H5I.c.o CMakeFiles/hdf5.dir/H5Itest.c.o CMakeFiles/hdf5.dir/H5L.c.o CMakeFiles/hdf5.dir/H5Lexternal.c.o 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Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/depend.internal". Scanning dependencies of target hdf5_tools make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 71%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice 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bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_attr.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security 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-std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff_dset.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff_dset.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice 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-Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools.c [ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_dump.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice 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-Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_str.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_str.c [ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_type.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice 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object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5trav.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_utils.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_utils.c cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5trav.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5trav.c [ 74%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/io_timer.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/io_timer.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/io_timer.c Scanning dependencies of target gatbcore-static make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 74%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o [ 74%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o [ 74%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o [ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/Bank.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankAlbum.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankBinary.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankFasta.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankSplitter.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/logging.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 77%] Linking C static library ../../../../lib/None/libhdf5_tools.a cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cmake -P CMakeFiles/hdf5_tools.dir/cmake_clean_target.cmake [ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Frontline.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/hdf5_tools.dir/link.txt --verbose=1 cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] /usr/bin/ar qc ../../../../lib/None/libhdf5_tools.a CMakeFiles/hdf5_tools.dir/h5diff.c.o CMakeFiles/hdf5_tools.dir/h5diff_array.c.o CMakeFiles/hdf5_tools.dir/h5diff_attr.c.o CMakeFiles/hdf5_tools.dir/h5diff_dset.c.o CMakeFiles/hdf5_tools.dir/h5diff_util.c.o CMakeFiles/hdf5_tools.dir/h5tools.c.o CMakeFiles/hdf5_tools.dir/h5tools_dump.c.o CMakeFiles/hdf5_tools.dir/h5tools_filters.c.o CMakeFiles/hdf5_tools.dir/h5tools_ref.c.o CMakeFiles/hdf5_tools.dir/h5tools_str.c.o CMakeFiles/hdf5_tools.dir/h5tools_type.c.o CMakeFiles/hdf5_tools.dir/h5tools_utils.c.o CMakeFiles/hdf5_tools.dir/h5trav.c.o CMakeFiles/hdf5_tools.dir/io_timer.c.o /usr/bin/ranlib ../../../../lib/None/libhdf5_tools.a make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 77%] Built target hdf5_tools make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/depend.internal". Scanning dependencies of target gatb-h5dump make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 77%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp [ 77%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 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-Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp [ 78%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 79%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump/h5dump_ddl.c [ 79%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 79%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Terminator.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 80%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/lib/kissplice -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump/h5dump_xml.c [ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Traversal.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Configuration.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 81%] Linking C executable ../../../../../../../lib/kissplice/gatb-h5dump cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-h5dump.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/gatb-h5dump.dir/h5dump.c.o CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o -o ../../../../../../../lib/kissplice/gatb-h5dump ../../../../lib/None/libhdf5_tools.a ../../../../lib/None/libhdf5.a -lm -ldl -lz -ldl -lz make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 81%] Built target gatb-h5dump [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/ModelData.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp [ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o [ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ 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bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c 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-Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 84%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 84%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/System.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 84%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ 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bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c 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-DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadMacos.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 85%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 85%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 86%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ 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'-Wformat-security' ignored without '-Wformat' [-Wformat-security] cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 86%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/RangeCoder.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadLinux.cpp: In constructor 'gatb::core::system::impl::ThreadLinux::ThreadLinux(void* (*)(void*), void*)': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:51:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 51 | int ret = pthread_attr_init ( &tattr ) ; | ^~~ [ 86%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd 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-DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 89%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:71, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/collections/impl/Bloom.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:40, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here 48 | class NativeInt64 | ^~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 128]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:13:17: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 64]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:13:17: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 32]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:13:17: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 96]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:13:17: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:3: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 32]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:31:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable] 236 | uint debug_index = 0; | ^~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:27, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function 'kmer_type DnaDecoder::extendAnchor(kmer_type, int, bool)': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds] 205 | return bin2ntTab[nt]; | ~~~~~~~~~~~~^ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab' 194 | static const int bin2ntTab[5]; | ^~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds] 205 | return bin2ntTab[nt]; | ~~~~~~~~~~~~^ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab' 194 | static const int bin2ntTab[5]; | ^~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 32]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]' /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:29:9: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] 258 | uint32_t first_index = markedSequence_index; | ^~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function 'void DnaDecoder::decodeAnchorRead()': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds] 205 | return bin2ntTab[nt]; | ~~~~~~~~~~~~^ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab' 194 | static const int bin2ntTab[5]; | ^~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds] 205 | return bin2ntTab[nt]; | ~~~~~~~~~~~~^ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab' 194 | static const int bin2ntTab[5]; | ^~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds] 205 | return bin2ntTab[nt]; | ~~~~~~~~~~~~^ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab' 194 | static const int bin2ntTab[5]; | ^~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds] 205 | return bin2ntTab[nt]; | ~~~~~~~~~~~~^ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab' 194 | static const int bin2ntTab[5]; | ^~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:3: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 128]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:31:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable] 236 | uint debug_index = 0; | ^~~~~~~~~~~ [ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<32>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<32>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<32>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 128]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]' /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:29:9: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] 258 | uint32_t first_index = markedSequence_index; | ^~~~~~~~~~~ [ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:3: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 64]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:31:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable] 236 | uint debug_index = 0; | ^~~~~~~~~~~ [ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:6: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 128]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 128]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 128]' /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 239 | while(filenames.size() > _reduceTarget) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 257 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 342 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:3: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 96]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:31:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable] 236 | uint debug_index = 0; | ^~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 64]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]' /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:29:9: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] 258 | uint32_t first_index = markedSequence_index; | ^~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:6: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 96]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]' /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:29:9: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable] 258 | uint32_t first_index = markedSequence_index; | ^~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 32]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]' /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 239 | while(filenames.size() > _reduceTarget) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 257 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 342 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 128]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 117 | for(int ii=0; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 120 | for(int jj=0; jj<= _histogram->getLength2(); jj++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 128]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1057:20: required from 'void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 128; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<128>::SuperKmer]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1048:8: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/Integer.hpp:29, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here 48 | class NativeInt64 | ^~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:6: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 32]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 117 | for(int ii=0; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 120 | for(int jj=0; jj<= _histogram->getLength2(); jj++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 32]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1057:20: required from 'void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 32; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<>::SuperKmer]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1048:8: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 64]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]' /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 239 | while(filenames.size() > _reduceTarget) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 257 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 342 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:6: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 96]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:14:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 96]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 96]' /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:14:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 239 | while(filenames.size() > _reduceTarget) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 257 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 342 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/Integer.hpp:29, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here 48 | class NativeInt64 | ^~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 64]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 117 | for(int ii=0; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 120 | for(int jj=0; jj<= _histogram->getLength2(); jj++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 64]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1057:20: required from 'void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 64; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<64>::SuperKmer]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1048:8: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/Integer.hpp:29, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here 48 | class NativeInt64 | ^~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 96]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 117 | for(int ii=0; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 120 | for(int jj=0; jj<= _histogram->getLength2(); jj++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 96]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1057:20: required from 'void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 96; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<96>::SuperKmer]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1048:8: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/Integer.hpp:29, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here 48 | class NativeInt64 | ^~~~~~~~~~~ [ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ [ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ [ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of 'void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 128; Abundance_t = unsigned char; NodeState_t = unsigned char]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:13:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable 'abundance' [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of 'void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 32; Abundance_t = unsigned char; NodeState_t = unsigned char]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:13:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable 'abundance' [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of 'void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 64; Abundance_t = unsigned char; NodeState_t = unsigned char]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:13:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable 'abundance' [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ [ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of 'void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 96; Abundance_t = unsigned char; NodeState_t = unsigned char]': /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:13:16: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable 'abundance' [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ [ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]': /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]' /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [ 99%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/None/libgatbcore.a CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o 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CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o /usr/bin/ranlib ../lib/None/libgatbcore.a make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 99%] Built target gatbcore-static make -f bcalm/CMakeFiles/bcalm.dir/build.make bcalm/CMakeFiles/bcalm.dir/depend make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/CMakeFiles/bcalm.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/CMakeFiles/bcalm.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/CMakeFiles/bcalm.dir/depend.internal". Dependee "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/CMakeFiles/bcalm.dir/depend.internal". Scanning dependencies of target bcalm make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/CMakeFiles/bcalm.dir/build.make bcalm/CMakeFiles/bcalm.dir/build make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [100%] Building CXX object bcalm/CMakeFiles/bcalm.dir/src/bcalm_1.cpp.o [100%] Building CXX object bcalm/CMakeFiles/bcalm.dir/src/main.cpp.o cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -I/build/reproducible-path/kissplice-2.5.3/bcalm/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/bcalm.dir/src/bcalm_1.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/src/bcalm_1.cpp cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm && /usr/bin/c++ -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -I/build/reproducible-path/kissplice-2.5.3/bcalm/src -I/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -I/build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/bcalm.dir/src/main.cpp.o -c /build/reproducible-path/kissplice-2.5.3/bcalm/src/main.cpp cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] cc1plus: warning: '-Wformat-security' ignored without '-Wformat' [-Wformat-security] [100%] Linking CXX executable ../lib/kissplice/bcalm cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm && /usr/bin/cmake -E cmake_link_script CMakeFiles/bcalm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bcalm.dir/src/bcalm_1.cpp.o CMakeFiles/bcalm.dir/src/main.cpp.o -o ../lib/kissplice/bcalm ext/gatb-core/lib/None/libgatbcore.a -ldl -lpthread -lz ext/gatb-core/lib/None/libhdf5.a -lm -lz -ldl make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [100%] Built target bcalm make[2]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' dh_auto_test cd obj-aarch64-linux-gnu && make -j12 test ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j12 Test project /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu Start 1: KisspliceBasicTest Start 2: KisspliceDBGTest Start 3: KisspliceTwoSequencesTest Start 4: KisspliceGraphAndSequenceTest Start 5: KisspliceGraphTest Start 6: ksBubbleEnumerationTest Start 7: ksRunModulesTest Start 8: ksErrorRemovalTest 1/8 Test #1: KisspliceBasicTest ............... Passed 0.10 sec 2/8 Test #6: ksBubbleEnumerationTest .......... Passed 0.08 sec 3/8 Test #7: ksRunModulesTest ................. Passed 0.08 sec 4/8 Test #8: ksErrorRemovalTest ............... Passed 0.07 sec 5/8 Test #5: KisspliceGraphTest ............... Passed 0.88 sec 6/8 Test #4: KisspliceGraphAndSequenceTest .... Passed 1.26 sec 7/8 Test #2: KisspliceDBGTest ................. Passed 6.20 sec 8/8 Test #3: KisspliceTwoSequencesTest ........ Passed 6.82 sec 100% tests passed, 0 tests failed out of 8 Total Test time (real) = 6.83 sec make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3' touch bcalm/README.md dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/kissplice-2.5.3/debian/kissplice AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kissplice-2.5.3 -B/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/depend make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/DependInfo.cmake --color= make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color= make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/json make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_clean_duplicates.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_bubble_enumeration.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_run_modules.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 0%] Built target H5detect make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build [ 0%] Built target H5make_libsettings [ 3%] Built target ks_kissreadsSNPS [ 5%] Built target ks_kissreadsSplice make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_error_removal.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= [ 8%] Built target ks_clean_duplicates cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF/ cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend [ 9%] Built target ks_error_removal [ 11%] Built target ks_bubble_enumeration [ 14%] Built target ks_run_modules make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_print_bcc.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/json/json.hpp /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/json/ cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 15%] Built target ks_print_bcc make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 15%] Built target thirdparty_copy make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2pkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2private.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2public.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 71%] Built target hdf5 make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 74%] Built target hdf5_tools make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/DependInfo.cmake --color= cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 75%] Built target gatb-h5dump cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Edefin.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Einit.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epubgen.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eterm.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDcore.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDdirect.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDfamily.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDlog.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpi.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpio.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmulti.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDsec2.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDstdio.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDwindows.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FOprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HPprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ipkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Iprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ipublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MMprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MMpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshared.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLextern.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ppkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ppublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RCprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SLprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5STprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5TSprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5VMprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5WBprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zpkg.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zprivate.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zpublic.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5api_adpt.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5overflow.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5private.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5public.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5version.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5win32defs.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/hdf5.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5pubconf.h /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 75%] Built target hdf5_postbuild make -f bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [ 99%] Built target gatbcore-static make -f bcalm/CMakeFiles/bcalm.dir/build.make bcalm/CMakeFiles/bcalm.dir/depend make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' cd /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kissplice-2.5.3 /build/reproducible-path/kissplice-2.5.3/bcalm /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/CMakeFiles/bcalm.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make -f bcalm/CMakeFiles/bcalm.dir/build.make bcalm/CMakeFiles/bcalm.dir/build make[4]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'bcalm/CMakeFiles/bcalm.dir/build'. make[4]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' [100%] Built target bcalm make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/bin/kissplice -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/bcalm -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5pubconf.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/lib/libhdf5.settings -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/hdf5.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5api_adpt.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5public.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5version.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5overflow.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Apkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Apublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5ACpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5ACpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5B2pkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5B2public.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Bpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Bpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Dpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Dpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Edefin.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Einit.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Epkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Epubgen.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Epublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Eterm.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Fpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Fpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDcore.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDdirect.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDfamily.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDlog.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDmpi.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDmpio.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDmulti.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDsec2.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDstdio.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FSpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FSpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Gpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Gpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HFpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HFpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HGpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HGpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HLpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HLpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5MPpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Opkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Opublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Oshared.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Ppkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Ppublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5PLextern.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5PLpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Rpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Rpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Spkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Spublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5SMpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Tpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Tpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Zpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Zpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Cpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Cpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Ipkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Ipublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Lpkg.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Lpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5MMpublic.h -- Up-to-date: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Rpkg.h -- Up-to-date: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Rpublic.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5trav.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5tools.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5tools_dump.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5tools_utils.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5tools_str.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5tools_ref.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5diff.h -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/bin/gatb-h5dump -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_kissreadsSNPS -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_kissreadsSplice -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_clean_duplicates -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_bubble_enumeration -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_run_modules -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_error_removal -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_print_bcc -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/share/man/man1/kissplice.1 -- Installing: /build/reproducible-path/kissplice-2.5.3/debian/kissplice/usr/share/doc/kissplice/user_guide.pdf make[2]: Leaving directory '/build/reproducible-path/kissplice-2.5.3/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3' rm -rf debian/kissplice/usr/README.md debian/kissplice/build debian/kissplice/builds mkdir -p debian/kissplice/usr/share/kissplice mv debian/kissplice/usr/bin/kissplice debian/kissplice/usr/share/kissplice/kissplice.py make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3' dh_installdocs make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3' dh_installchangelogs dh_installexamples dh_installman dh_python3 I: dh_python3 tools:114: replacing shebang in debian/kissplice/usr/share/kissplice/kissplice.py dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/kissplice-2.5.3' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/kissplice-2.5.3' dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'kissplice-dbgsym' in '../kissplice-dbgsym_2.5.3-3_arm64.deb'. dpkg-deb: building package 'kissplice' in '../kissplice_2.5.3-3_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../kissplice_2.5.3-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1401137 and its subdirectories I: Current time: Fri Feb 7 23:10:05 -12 2025 I: pbuilder-time-stamp: 1739013005 Sun Jan 7 04:47:08 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Sun Jan 7 04:47:08 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Sun Jan 7 04:51:53 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Sun Jan 7 04:51:54 UTC 2024 I: kissplice_2.5.3-3_arm64.changes: Format: 1.8 Date: Mon, 26 Oct 2020 04:00:37 +0530 Source: kissplice Binary: kissplice kissplice-dbgsym Architecture: arm64 Version: 2.5.3-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: kissplice - Detection of various kinds of polymorphisms in RNA-seq data Closes: 972768 Changes: kissplice (2.5.3-3) unstable; urgency=medium . * Team Upload. * Fix gcc-10 FTBFS (Closes: #972768) Checksums-Sha1: 8295d0e7f449c81c354512544972bb9f5390910a 55800900 kissplice-dbgsym_2.5.3-3_arm64.deb 88da0e4cdf7382d920e0248497e30ba387b0aeaf 6882 kissplice_2.5.3-3_arm64.buildinfo 4082e1930ef9f274c8234a94ad4a716640ad7e4a 3770028 kissplice_2.5.3-3_arm64.deb Checksums-Sha256: 03b0e25e8545669faeead254d304ef78b15be371a3233e4e2fc175f5bdb56917 55800900 kissplice-dbgsym_2.5.3-3_arm64.deb 19645a2c89929a7471c89a3d7f6ca7e73fcd7f94deafe465073a23ce49304b8e 6882 kissplice_2.5.3-3_arm64.buildinfo 790722087e513b08c2f73e653c80a189657e0908b52e542155a18c0b8ae90ecc 3770028 kissplice_2.5.3-3_arm64.deb Files: 2c9ee9acbbc442257410db58ecf735a2 55800900 debug optional kissplice-dbgsym_2.5.3-3_arm64.deb 9b660ffab5c5aa5c856d490fab298dcb 6882 science optional kissplice_2.5.3-3_arm64.buildinfo 4feee8b5e1af041872600545c86494b5 3770028 science optional kissplice_2.5.3-3_arm64.deb Sun Jan 7 04:51:55 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.KAy7HBvY/kissplice_2.5.3-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.KAy7HBvY/kissplice_2.5.3-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.KAy7HBvY/kissplice_2.5.3-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.KAy7HBvY/b1/kissplice_2.5.3-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.KAy7HBvY/b2/kissplice_2.5.3-3_arm64.changes ## close_archive (total time: 0.008s) 0.008s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 2930.156s) 1346.989s 2034 calls readelf 1146.399s 229 calls diff 385.920s 352 calls objdump 24.554s 20 calls xz 22.741s 4 calls objcopy 3.524s 44 calls strings 0.020s 24 calls cmp (internal) 0.004s 1 call cmp 0.004s 1 call cmp (external) ## compare_files (cumulative) (total time: 27986.581s) 4864.404s 1 call abc.DotChangesFile 4863.707s 2 calls abc.DebFile 4859.458s 4 calls abc.XzFile 4850.360s 2 calls abc.DebDataTarFile 4842.906s 4 calls abc.ElfFile 3679.193s 16 calls diffoscope.comparators.elf.ElfCodeSection 20.007s 72 calls diffoscope.comparators.elf.ElfSection 5.603s 4 calls diffoscope.comparators.elf.ElfStringSection 0.599s 2 calls abc.TextFile 0.192s 2 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.136s 2 calls abc.TarFile 0.016s 2 calls abc.Md5sumsFile ## container_extract (total time: 30.102s) 24.556s 20 calls diffoscope.comparators.xz.XzContainer 4.288s 24 calls diffoscope.comparators.deb.DebContainer 1.240s 68 calls diffoscope.comparators.deb.DebTarContainer 0.017s 20 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 4.059s) 4.059s 24 calls linediff ## has_same_content_as (total time: 0.089s) 0.029s 2 calls abc.DebDataTarFile 0.018s 2 calls abc.DebFile 0.018s 2 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.012s 7 calls abc.TextFile 0.008s 4 calls abc.ElfFile 0.002s 4 calls abc.XzFile 0.001s 2 calls abc.TarFile 0.001s 72 calls diffoscope.comparators.elf.ElfSection 0.001s 4 calls abc.Md5sumsFile 0.000s 1 call abc.DotChangesFile 0.000s 16 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 4 calls diffoscope.comparators.elf.ElfStringSection 0.000s 2 calls diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 4873.398s) 4873.397s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.002s) 0.001s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 8 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 7.858s) 7.632s 1 call html 0.222s 1 call text 0.004s 1 call json ## recognizes (total time: 21.451s) 15.838s 788 calls diffoscope.comparators.utils.archive.ArchiveMember 2.207s 2064 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 1.187s 1584 calls diffoscope.comparators.elf.ElfSection 0.754s 12 calls diffoscope.comparators.binary.FilesystemFile 0.635s 352 calls diffoscope.comparators.elf.ElfCodeSection 0.443s 216 calls diffoscope.comparators.debian.DebControlMember 0.314s 44 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.071s 88 calls diffoscope.comparators.elf.ElfStringSection 0.001s 8 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 32 calls abc.Md5sumsFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 4.163s) 4.163s 122 calls specialize Sun Jan 7 06:13:11 UTC 2024 E: kissplice failed to build reproducibly in bullseye on arm64. Sun Jan 7 06:13:11 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bullseye/arm64/kissplice_2.5.3-3.diffoscope.html Sun Jan 7 06:13:18 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Jan 7 06:13:18 UTC 2024 I: Submitting 8.0K b1/kissplice_2.5.3-3_arm64.buildinfo.asc Sun Jan 7 06:13:19 UTC 2024 I: Submitting 8.0K b2/kissplice_2.5.3-3_arm64.buildinfo.asc Sun Jan 7 06:13:20 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jan 7 06:13:20 UTC 2024 I: Done submitting .buildinfo files. Sun Jan 7 06:13:20 UTC 2024 I: Removing signed kissplice_2.5.3-3_arm64.buildinfo.asc files: removed './b1/kissplice_2.5.3-3_arm64.buildinfo.asc' removed './b2/kissplice_2.5.3-3_arm64.buildinfo.asc'