Tue Aug 24 02:47:36 UTC 2021 I: starting to build genometester/bullseye/arm64 on jenkins on '2021-08-24 02:47' Tue Aug 24 02:47:36 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_13/8177/console.log Tue Aug 24 02:47:36 UTC 2021 I: Downloading source for bullseye/genometester=4.0+git20200511.91cecb5+dfsg-1 --2021-08-24 02:47:36-- http://cdn-fastly.deb.debian.org/debian/pool/main/g/genometester/genometester_4.0%2bgit20200511.91cecb5%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) Saving to: ‘genometester_4.0+git20200511.91cecb5+dfsg-1.dsc’ 0K .. 100% 224M=0s 2021-08-24 02:47:37 (224 MB/s) - ‘genometester_4.0+git20200511.91cecb5+dfsg-1.dsc’ saved [2224/2224] Tue Aug 24 02:47:37 UTC 2021 I: genometester_4.0+git20200511.91cecb5+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: genometester Binary: genometester Architecture: any Version: 4.0+git20200511.91cecb5+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Liubov Chuprikova , Andreas Tille Homepage: https://github.com/bioinfo-ut/GenomeTester4 Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/genometester Vcs-Git: https://salsa.debian.org/med-team/genometester.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12) Package-List: genometester deb science optional arch=any Checksums-Sha1: 9bb2833f18dd955907cb4eb34c60f5a161714b12 87872 genometester_4.0+git20200511.91cecb5+dfsg.orig.tar.xz f06ad509d6ccab4724444478241842469a855ce8 232860 genometester_4.0+git20200511.91cecb5+dfsg-1.debian.tar.xz Checksums-Sha256: 4b1360ab90dd0469945d7c88e1e361804849e27e15594e132882ffb84ae25808 87872 genometester_4.0+git20200511.91cecb5+dfsg.orig.tar.xz 1dd432ab7e6eb091554876f38d27a72d6cdb6fa511ab310ad2df7ebb4c59763d 232860 genometester_4.0+git20200511.91cecb5+dfsg-1.debian.tar.xz Files: 25bdcb96a8dd105d0944c144b53c606b 87872 genometester_4.0+git20200511.91cecb5+dfsg.orig.tar.xz 396b72e53338bd3173402c3baa7403ce 232860 genometester_4.0+git20200511.91cecb5+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl7BfoQTHG1vZWxsZXJA ZGViaWFuLm9yZwAKCRAv2L7awCDu0XMGD/4rxUZ5IVCoR2dnaBQrNUfkA/RVigUs +dBKucXGFw1g2981A10lsoyVhAgqglFcilBNg5VDrgnZqBBmujWytSB9D4xsHMaK 9y4gXOAU9PeGMTSDM844kIuuv66I6y4HtXbZ2/f7QnTgZ8xU/E6I1SpXeteO9wqj g02O4XF5Z6g6W29JJ80s+2vEACoB18lzfrJMCeXBwCWAKxnLjLPbHlwsZzEKJUI7 pfIWvQX4+Zm2xS1cI6W8rqaEUuvDhGBbck/PULdqPIOz6/QhyyR0cG2ZTlLUOFXt ARGzPKEYtd09N8RzQAK4pVHQQxCkXl8lrh0vWwRTho1yxgJ3Qd8SrUj3IeOMjeaX +/B0ySZAylKGBKSM4BkiwvYa/1458BJv/L1rrtU2YGGIBfAkYtxfbCNitNRomtAQ WXAOke8+0UKPSwNe18XR9Y2uiOyfryVco6clMPQfFiYAdVdCnkNMED+r1PZ4eOZ1 R7QKpeIo3Kk1QCd3iWN7mkDO63aQY9FqA/WYzCQvWOXaf6XgQ0RL9yWMDot22iGE FzLwRzdK7WPw8pDYToUSeB3a4iGSVpKIHE0cwafcfrmvZwKUvE5F6Q3DdMmlezNE EIsnV1+zI6nN0/SMC1K1vt8gadHMjJtLlI7uL37c/T4q/r8zuT53U5DWimJsjwUt 4lvNRgibXH45jw== =eWXy -----END PGP SIGNATURE----- Tue Aug 24 02:47:37 UTC 2021 I: Checking whether the package is not for us Tue Aug 24 02:47:37 UTC 2021 I: Starting 1st build on remote node codethink12-arm64.debian.net. Tue Aug 24 02:47:37 UTC 2021 I: Preparing to do remote build '1' on codethink12-arm64.debian.net. Tue Aug 24 02:48:36 UTC 2021 I: Deleting $TMPDIR on codethink12-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 23 14:47:42 -12 2021 I: pbuilder-time-stamp: 1629773262 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [genometester_4.0+git20200511.91cecb5+dfsg-1.dsc] I: copying [./genometester_4.0+git20200511.91cecb5+dfsg.orig.tar.xz] I: copying [./genometester_4.0+git20200511.91cecb5+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.DYOz_x7D/trustedkeys.kbx': General error gpgv: Signature made Sun May 17 06:12:20 2020 -12 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./genometester_4.0+git20200511.91cecb5+dfsg-1.dsc dpkg-source: info: extracting genometester in genometester-4.0+git20200511.91cecb5+dfsg dpkg-source: info: unpacking genometester_4.0+git20200511.91cecb5+dfsg.orig.tar.xz dpkg-source: info: unpacking genometester_4.0+git20200511.91cecb5+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_debug_symbols.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/31191/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='31191' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.eAxwcoWJIm/pbuilderrc_fQTF --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.eAxwcoWJIm/b1 --logfile b1/build.log genometester_4.0+git20200511.91cecb5+dfsg-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink12-arm64 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 20 21:24 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/31191/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 17.9 MB of archives. After unpacking 67.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Fetched 17.9 MB in 0s (54.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../10-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../23-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../25-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/genometester-4.0+git20200511.91cecb5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../genometester_4.0+git20200511.91cecb5+dfsg-1_source.changes dpkg-buildpackage: info: source package genometester dpkg-buildpackage: info: source version 4.0+git20200511.91cecb5+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/build/genometester-4.0+git20200511.91cecb5+dfsg' dh_auto_clean cd src && make -j8 clean make[2]: Entering directory '/build/genometester-4.0+git20200511.91cecb5+dfsg/src' rm -f *.o glistmaker glistquery glistcompare make[2]: Leaving directory '/build/genometester-4.0+git20200511.91cecb5+dfsg/src' rm -f src/gdistribution src/gmer_caller src/gmer_counter make[1]: Leaving directory '/build/genometester-4.0+git20200511.91cecb5+dfsg' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/build/genometester-4.0+git20200511.91cecb5+dfsg' dh_auto_build cd src && make -j8 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/genometester-4.0+git20200511.91cecb5+dfsg/src' gcc glistmaker.c common.c common.h fasta.c fasta.h wordtable.c wordtable.h wordmap.c wordmap.h buffer.c buffer.h sequence.c sequence.h sequence-file.c sequence-file.h queue.c queue.h utils.c utils.h -o glistmaker -lm -lpthread -lrt -g -O2 -fdebug-prefix-map=/build/genometester-4.0+git20200511.91cecb5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I. -O3 -g -Wall -Wl,-z,relro -Wl,-z,now gcc glistquery.c wordtable.c wordtable.h wordmap.c wordmap.h fasta.c fasta.h buffer.c buffer.h sequence.c sequence.h sequence-file.c sequence-file.h common.c common.h queue.c queue.h utils.c utils.h -o glistquery -lm -lpthread -lrt -g -O2 -fdebug-prefix-map=/build/genometester-4.0+git20200511.91cecb5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I. -O3 -g -Wall -Wl,-z,relro -Wl,-z,now gcc glistcompare.c wordtable.c wordmap.c fasta.c buffer.c sequence.c sequence-file.c sequence-file.h common.c queue.c queue.h utils.c -o glistcompare -lm -lpthread -lrt -g -O2 -fdebug-prefix-map=/build/genometester-4.0+git20200511.91cecb5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I. -O3 -g -Wall -Wl,-z,relro -Wl,-z,now glistmaker.c: In function ‘process’: glistmaker.c:380:5: warning: ‘t[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 380 | wordtable_build_filename (t[0], c, 1024, outputname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/genometester-4.0+git20200511.91cecb5+dfsg/src' dh_auto_build -- gmer_counter cd src && make -j8 "INSTALL=install --strip-program=true" gmer_counter make[2]: Entering directory '/build/genometester-4.0+git20200511.91cecb5+dfsg/src' gcc gmer_counter.c index.c index.h trie.c trie.h wordmap.c wordmap.h sequence.c sequence.h sequence-file.c sequence-file.h wordtable.c wordtable.h fasta.c fasta.h thread-pool.c thread-pool.h queue.c queue.h utils.c utils.h database.c database.h -o gmer_counter -lm -lpthread -lrt -g -O2 -fdebug-prefix-map=/build/genometester-4.0+git20200511.91cecb5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I. -O3 -g -Wall -Wl,-z,relro -Wl,-z,now -Wall make[2]: Leaving directory '/build/genometester-4.0+git20200511.91cecb5+dfsg/src' dh_auto_build -- gmer_caller cd src && make -j8 "INSTALL=install --strip-program=true" gmer_caller make[2]: Entering directory '/build/genometester-4.0+git20200511.91cecb5+dfsg/src' gcc binomial.c binomial.h genotypes.c genotypes.h simplex.c simplex.h thread-pool.c thread-pool.h utils.c utils.h gmer_caller.c -o gmer_caller -lm -lpthread -lrt -g -O2 -fdebug-prefix-map=/build/genometester-4.0+git20200511.91cecb5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I. -O3 -g -Wall -Wl,-z,relro -Wl,-z,now -Wall gmer_caller.c: In function ‘main’: gmer_caller.c:495:16: warning: variable ‘coverage_specified’ set but not used [-Wunused-but-set-variable] 495 | unsigned int coverage_specified = 0; | ^~~~~~~~~~~~~~~~~~ At top level: gmer_caller.c:903:1: warning: ‘logL2’ defined but not used [-Wunused-function] 903 | logL2 (const float arg[], unsigned int count, unsigned int tulem2[], unsigned int katvus2[]) | ^~~~~ gmer_caller.c: In function ‘parse_calls’: gmer_caller.c:168:24: warning: ‘best_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 168 | calls[i].counts[1] = best_b; | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ gmer_caller.c:167:24: warning: ‘best_a’ may be used uninitialized in this function [-Wmaybe-uninitialized] 167 | calls[i].counts[0] = best_a; | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ gmer_caller.c: In function ‘main’: gmer_caller.c:785:9: warning: ‘calls_x’ may be used uninitialized in this function [-Wmaybe-uninitialized] 785 | print_genotypes (lines, calls_x, nx, params, pB, (non_canonical) ? 0 : 2, prob_cutoff, alternatives, nthreads); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/genometester-4.0+git20200511.91cecb5+dfsg/src' dh_auto_build -- gdistribution cd src && make -j8 "INSTALL=install --strip-program=true" gdistribution make[2]: Entering directory '/build/genometester-4.0+git20200511.91cecb5+dfsg/src' gcc gdistribution.c wordtable.c wordmap.c fasta.c buffer.c sequence.c sequence-file.c sequence-file.h common.c queue.c queue.h utils.c -o gdistribution -lm -lpthread -lrt -g -O2 -fdebug-prefix-map=/build/genometester-4.0+git20200511.91cecb5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I. -O3 -g -Wall -Wl,-z,relro -Wl,-z,now gdistribution.c: In function ‘main’: gdistribution.c:55:9: warning: unused variable ‘freqs’ [-Wunused-variable] 55 | Freq *freqs; | ^~~~~ make[2]: Leaving directory '/build/genometester-4.0+git20200511.91cecb5+dfsg/src' make[1]: Leaving directory '/build/genometester-4.0+git20200511.91cecb5+dfsg' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install -O--sourcedirectory=src dh_install -O--sourcedirectory=src dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installinit -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -O--sourcedirectory=src dh_strip -O--sourcedirectory=src dh_makeshlibs -O--sourcedirectory=src dh_shlibdeps -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'genometester' in '../genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.deb'. dpkg-deb: building package 'genometester-dbgsym' in '../genometester-dbgsym_4.0+git20200511.91cecb5+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31191 and its subdirectories I: Current time: Mon Aug 23 14:48:35 -12 2021 I: pbuilder-time-stamp: 1629773315 Tue Aug 24 02:48:37 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net. Tue Aug 24 02:48:37 UTC 2021 I: Preparing to do remote build '2' on codethink9-arm64.debian.net. Tue Aug 24 02:50:06 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net. Tue Aug 24 02:50:07 UTC 2021 I: genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.changes: Format: 1.8 Date: Sun, 17 May 2020 20:06:55 +0200 Source: genometester Binary: genometester genometester-dbgsym Architecture: arm64 Version: 4.0+git20200511.91cecb5+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: genometester - toolkit for performing set operations on k-mer lists Changes: genometester (4.0+git20200511.91cecb5+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. (routine-update) * Added d/TODO to indicate missing man page (also a lintian warning) * Improved clean. Checksums-Sha1: ea81fdba16427d5817c4abce207e819322292264 265876 genometester-dbgsym_4.0+git20200511.91cecb5+dfsg-1_arm64.deb 24e93deba29f1d7e68664a62a54bc1d112856f90 5058 genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.buildinfo b3fe779678bf118076a4687bac66414a293fb237 301140 genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.deb Checksums-Sha256: 72e0866ff1372b49687c9cd1146c14acc59fecba763ac1b5d5a858290a77b599 265876 genometester-dbgsym_4.0+git20200511.91cecb5+dfsg-1_arm64.deb 6f76f4726a6bd763995744523475dc38977ce87d43e1ab8dd73edcc1e1844221 5058 genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.buildinfo 92d6540dea13954a59db07144a8465fc65620be902e2ef6f3cf933d560500137 301140 genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.deb Files: 95c7bf10291b6d1b1a60f372f4630da7 265876 debug optional genometester-dbgsym_4.0+git20200511.91cecb5+dfsg-1_arm64.deb 32a84df3fdfa2feb636e848f709b8c6b 5058 science optional genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.buildinfo 8b72b671d342718216697257538eef53 301140 science optional genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.deb Tue Aug 24 02:50:08 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.eAxwcoWJIm/genometester_4.0+git20200511.91cecb5+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.eAxwcoWJIm/genometester_4.0+git20200511.91cecb5+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.eAxwcoWJIm/genometester_4.0+git20200511.91cecb5+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.eAxwcoWJIm/b1/genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.eAxwcoWJIm/b2/genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.273s) 0.273s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Aug 24 02:50:09 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 24 02:50:09 UTC 2021 I: genometester from bullseye built successfully and reproducibly on arm64. Tue Aug 24 02:50:11 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Aug 24 02:50:11 UTC 2021 I: Submitting 8.0K b1/genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.buildinfo.asc Tue Aug 24 02:50:12 UTC 2021 I: Submitting 8.0K b2/genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.buildinfo.asc Tue Aug 24 02:50:14 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 24 02:50:14 UTC 2021 I: Done submitting .buildinfo files. Tue Aug 24 02:50:14 UTC 2021 I: Removing signed genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.buildinfo.asc files: removed './b1/genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.buildinfo.asc' removed './b2/genometester_4.0+git20200511.91cecb5+dfsg-1_arm64.buildinfo.asc'