Wed Jul 28 05:25:15 UTC 2021 I: starting to build epcr/bullseye/arm64 on jenkins on '2021-07-28 05:24' Wed Jul 28 05:25:15 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_18/23846/console.log Wed Jul 28 05:25:15 UTC 2021 I: Downloading source for bullseye/epcr=2.3.12-1-9 --2021-07-28 05:25:15-- http://cdn-fastly.deb.debian.org/debian/pool/main/e/epcr/epcr_2.3.12-1-9.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2026 (2.0K) Saving to: ‘epcr_2.3.12-1-9.dsc’ 0K . 100% 134M=0s 2021-07-28 05:25:15 (134 MB/s) - ‘epcr_2.3.12-1-9.dsc’ saved [2026/2026] Wed Jul 28 05:25:15 UTC 2021 I: epcr_2.3.12-1-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: epcr Binary: ncbi-epcr Architecture: any Version: 2.3.12-1-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Charles Plessy Homepage: https://www.ncbi.nlm.nih.gov/tools/epcr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/epcr Vcs-Git: https://salsa.debian.org/med-team/epcr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: ncbi-epcr deb science optional arch=any Checksums-Sha1: b63d03b5bd9e25989c0da27aa56c990057636b34 76840 epcr_2.3.12-1.orig.tar.gz 1267283af28487190f002fa8152742c154b0cd0b 55888 epcr_2.3.12-1-9.debian.tar.xz Checksums-Sha256: 92613a09cbba3eab66916488063b56e2a3b50a82e5308b1731b6b90d232b8275 76840 epcr_2.3.12-1.orig.tar.gz b90159da3b91073b692a6c8040c897d77f238dcbbdbc810744d95adfa340749f 55888 epcr_2.3.12-1-9.debian.tar.xz Files: 516b111f78769af24393e61b0bf7fd80 76840 epcr_2.3.12-1.orig.tar.gz 265e43f3726fb123c05d4e41c570216a 55888 epcr_2.3.12-1-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/OjHYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEe6xAAiy5oxkk4jqpcxMMR48F17yN4fUYBLcmp u9qCZQCVm1Iu//I+96cUROfB3OPUoq6a8HzPn4khkUA0DhXHk44H8Jp/GXjVQ8gQ +OOjpfPZC4zgonP+QSJs/HoqN7Ll5gqqcNnE+yAeVnzl2EXFvlOMHcF5qex5398H VgoW1CYP6lHfhpiZ6o3heC9Kyzgffei5VcgzQ/qzil1yYpULrNVymiab1fpSG1v5 nucTSl4tDSUjMRvmsw8dSXx07WthqXFZNJM3yWt/wojFsnchbe2QCdqfk4wqhPlA TWyiUm+tCmZ/jz4+DO5ymqh/XZN7IND1prgQALLL043m26SPeYksHb/kFPlDRaV6 KGtw3ut48O4I3YKk3DhWDC+vE/Ha9bjnAzz5eRN59gU3J20IFTb/qBfGW62Nautn 93ngu57k6iRf7QxH4uSkiyuMDMlMRP05xlPsxDw7J4zns085i2fIKrfObjGOseBF 3b0TxjBKI3Mjm632XOT/+Se9zNN3o2toFL/M8jOo2gzDS653HaDjyQ0LYep67Iv6 BynbHhTDHrjxkg8p9cH91MCcrkv65ydKDhs75TSlyL/wZ3pVH7UldcnRqiwhu52M jR4aI8gT0o/Ep+7UUaVmEXM4kjHebVJVbV9SVwddMD3u8KqMifjJDjDxlm1sG1In 009Mn8RoFUY= =bhU2 -----END PGP SIGNATURE----- Wed Jul 28 05:25:15 UTC 2021 I: Checking whether the package is not for us Wed Jul 28 05:25:15 UTC 2021 I: Starting 1st build on remote node codethink13-arm64.debian.net. Wed Jul 28 05:25:15 UTC 2021 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Wed Jul 28 05:26:47 UTC 2021 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 29 23:48:17 -12 2022 I: pbuilder-time-stamp: 1661860097 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [epcr_2.3.12-1-9.dsc] I: copying [./epcr_2.3.12-1.orig.tar.gz] I: copying [./epcr_2.3.12-1-9.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.fa6A01QI/trustedkeys.kbx': General error gpgv: Signature made Mon Dec 7 08:11:34 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./epcr_2.3.12-1-9.dsc dpkg-source: info: extracting epcr in epcr-2.3.12-1 dpkg-source: info: unpacking epcr_2.3.12-1.orig.tar.gz dpkg-source: info: unpacking epcr_2.3.12-1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_clean_target.patch dpkg-source: info: applying fix_header_location.patch dpkg-source: info: applying ensure_build_options.patch dpkg-source: info: applying use-dpkg-buildflags.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22446/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22446' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.3tvxgWLBHO/pbuilderrc_Wzon --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.3tvxgWLBHO/b1 --logfile b1/build.log epcr_2.3.12-1-9.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 2021 more -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 29 03:47 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/22446/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 17.9 MB of archives. After unpacking 67.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Fetched 17.9 MB in 0s (48.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../10-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../23-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../25-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... 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Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/epcr-2.3.12-1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../epcr_2.3.12-1-9_source.changes dpkg-buildpackage: info: source package epcr dpkg-buildpackage: info: source version 2.3.12-1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/epcr-2.3.12-1' rm -fr epcr rm -f *_depend.mk rm -f libepcr.a *.o rm -f e-PCR famap fahash re-PCR make[1]: Leaving directory '/build/epcr-2.3.12-1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel dh_auto_configure -O--no-parallel debian/rules override_dh_auto_build make[1]: Entering directory '/build/epcr-2.3.12-1' dh_auto_build -- links depend all OPTIMIZE=6 make -j1 "INSTALL=install --strip-program=true" links depend all OPTIMIZE=6 make[2]: Entering directory '/build/epcr-2.3.12-1' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' links ; \ done make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "epcr" ; then \ test -L epcr || ln -s . epcr ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' depend ; \ done make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./faread.cpp ./fast_seqio_read.cpp ./fast_seqio_write.cpp ./hashset.cpp ./mmap.cpp ./align.cpp ./stsmatch_i.cpp ./stsmatch_m.cpp ./stsfilter.cpp ./stsmatch.cpp ./fahash_create.cpp ./fahash_create1.cpp ./fahash_create2.cpp ./fahash_lookup.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./libepcr_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./e-PCR_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdepcr_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./famap_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfamap_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./fahash_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfahash_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./re-PCR_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdrpcr_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' all ; \ done make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "epcr" ; then \ test -L epcr || ln -s . epcr ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c faread.cpp -o faread.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fast_seqio_read.cpp -o fast_seqio_read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fast_seqio_write.cpp -o fast_seqio_write.o fast_seqio_write.cpp:45:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 45 | FILE * f = fopen64( fname.c_str(), "w"FILE_BINARY ); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c hashset.cpp -o hashset.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c mmap.cpp -o mmap.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c align.cpp -o align.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch_i.cpp -o stsmatch_i.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch_m.cpp -o stsmatch_m.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsfilter.cpp -o stsfilter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch.cpp -o stsmatch.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create.cpp -o fahash_create.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create1.cpp -o fahash_create1.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create2.cpp -o fahash_create2.o fahash_create2.cpp: In member function 'virtual void ncbi::pcr_tools::CFaIndexer2::DumpTables()': fahash_create2.cpp:145:2: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 145 | auto_ptr fmap( 0 ); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from fahash_create2.cpp:38: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_lookup.cpp -o fahash_lookup.o fahash_lookup.cpp: In member function 'void ncbi::pcr_tools::CFaLookup::AttachFile(const string&)': fahash_lookup.cpp:161:6: warning: ignoring return value of 'ssize_t read(int, void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 161 | read( m_Fd, buff, 16 ); // signature | ~~~~^~~~~~~~~~~~~~~~~~ rm -f libepcr.a ar cru libepcr.a ./faread.o ./fast_seqio_read.o ./fast_seqio_write.o ./hashset.o ./mmap.o ./align.o ./stsmatch_i.o ./stsmatch_m.o ./stsfilter.o ./stsmatch.o ./fahash_create.o ./fahash_create1.o ./fahash_create2.o ./fahash_lookup.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libepcr.a make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c e-PCR_main.cpp -o e-PCR_main.o e-PCR_main.cpp: In member function 'int CMain::Execute()': e-PCR_main.cpp:626:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 626 | auto_ptr cbk(0); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from e-PCR_main.cpp:40: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ rm -f e-PCR g++ -Wl,-z,relro -Wl,-z,now -L. -o e-PCR ./e-PCR_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c famap_main.cpp -o famap_main.o famap_main.cpp: In member function 'int CMain::Execute()': famap_main.cpp:145:1: warning: control reaches end of non-void function [-Wreturn-type] 145 | } | ^ rm -f famap g++ -Wl,-z,relro -Wl,-z,now -L. -o famap ./famap_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_main.cpp -o fahash_main.o fahash_main.cpp: In member function 'int CMain::Build()': fahash_main.cpp:212:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 212 | auto_ptr indexer( | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from fahash_main.cpp:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ fahash_main.cpp: In member function 'int CMain::Stat()': fahash_main.cpp:303:41: warning: format '%lld' expects argument of type 'long long int', but argument 6 has type 'long unsigned int' [-Wformat=] 303 | fprintf(out,"%d\t%d\t%s\t%lld\t%lf\n",wd,i,wtype, | ~~~^ | | | long long int | %ld fahash_main.cpp: In member function 'int CMain::Execute()': fahash_main.cpp:261:1: warning: control reaches end of non-void function [-Wreturn-type] 261 | } | ^ rm -f fahash g++ -Wl,-z,relro -Wl,-z,now -L. -o fahash ./fahash_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -fdebug-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c re-PCR_main.cpp -o re-PCR_main.o re-PCR_main.cpp: In member function 'int CMain::PrimerLookup()': re-PCR_main.cpp:365:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 365 | auto_ptr rev(FlipSequence(argv[i])); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from re-PCR_main.cpp:42: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ re-PCR_main.cpp:395:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 395 | auto_ptr rev(FlipSequence(primer.c_str())); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from re-PCR_main.cpp:42: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ re-PCR_main.cpp: In member function 'int CMain::STSLookup()': re-PCR_main.cpp:487:58: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'std::__cxx11::list::size_type' {aka 'long unsigned int'} [-Wformat=] 487 | fprintf(stderr,"= File %s, STSes %u-%u\n", | ~^ | | | unsigned int | %lu 488 | argv[i],fcount+1,fcount+stslist.size()); | ~~~~~~~~~~~~~~~~~~~~~ | | | std::__cxx11::list::size_type {aka long unsigned int} re-PCR_main.cpp:501:50: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'std::__cxx11::list::size_type' {aka 'long unsigned int'} [-Wformat=] 501 | fprintf(stderr,"= File %s, STSes %u-%u\n", | ~^ | | | unsigned int | %lu 502 | argv[i],fcount+1,fcount+stslist.size()); | ~~~~~~~~~~~~~~~~~~~~~ | | | std::__cxx11::list::size_type {aka long unsigned int} re-PCR_main.cpp: In member function 'int CMain::Execute()': re-PCR_main.cpp:349:1: warning: control reaches end of non-void function [-Wreturn-type] 349 | } | ^ rm -f re-PCR g++ -Wl,-z,relro -Wl,-z,now -L. -o re-PCR ./re-PCR_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[2]: Leaving directory '/build/epcr-2.3.12-1' make[1]: Leaving directory '/build/epcr-2.3.12-1' dh_auto_test -O--no-parallel create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/epcr-2.3.12-1' # do nothing make[1]: Leaving directory '/build/epcr-2.3.12-1' dh_install -O--no-parallel dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'ncbi-epcr-dbgsym' in '../ncbi-epcr-dbgsym_2.3.12-1-9_arm64.deb'. dpkg-deb: building package 'ncbi-epcr' in '../ncbi-epcr_2.3.12-1-9_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../epcr_2.3.12-1-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22446 and its subdirectories I: Current time: Mon Aug 29 23:49:45 -12 2022 I: pbuilder-time-stamp: 1661860185 Wed Jul 28 05:26:48 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink12-arm64.debian.net. Wed Jul 28 05:26:48 UTC 2021 I: Preparing to do remote build '2' on codethink12-arm64.debian.net. Wed Jul 28 05:29:02 UTC 2021 I: Deleting $TMPDIR on codethink12-arm64.debian.net. Wed Jul 28 05:29:03 UTC 2021 I: epcr_2.3.12-1-9_arm64.changes: Format: 1.8 Date: Mon, 07 Dec 2020 21:08:43 +0100 Source: epcr Binary: ncbi-epcr ncbi-epcr-dbgsym Architecture: arm64 Version: 2.3.12-1-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged s Changes: epcr (2.3.12-1-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Fix day-of-week for changelog entries 1.2.0-3, 1.2.0-2. Checksums-Sha1: d29589c320bd7484ee88d8857920a0a17e6ee046 4860 epcr_2.3.12-1-9_arm64.buildinfo 65b832163b68dc22e9d3d6b3fbcbd0a958d8dbd0 1338192 ncbi-epcr-dbgsym_2.3.12-1-9_arm64.deb e383933ab737309933b5db3e94b948b0ccac35f6 157296 ncbi-epcr_2.3.12-1-9_arm64.deb Checksums-Sha256: c59829476f26d10860239842cdaa9fbbc818da2f23a6c5b73d2a6518d35c8f6c 4860 epcr_2.3.12-1-9_arm64.buildinfo e0cc1ff6a946f8168c66d8b9397213cfc69fd355224c436b1f1a4a96cc517f41 1338192 ncbi-epcr-dbgsym_2.3.12-1-9_arm64.deb cd2d09a44eb3183847396c79f2e669079676be9f054fb33e55a2c8f7e8920040 157296 ncbi-epcr_2.3.12-1-9_arm64.deb Files: 061367e8b569a0d2a990d3337f98e262 4860 science optional epcr_2.3.12-1-9_arm64.buildinfo cf350f23d4bc8c0a118a05698e8f772b 1338192 debug optional ncbi-epcr-dbgsym_2.3.12-1-9_arm64.deb 257026bbeb0b809bb53107bc7c609e70 157296 science optional ncbi-epcr_2.3.12-1-9_arm64.deb Wed Jul 28 05:29:04 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.3tvxgWLBHO/epcr_2.3.12-1-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.3tvxgWLBHO/epcr_2.3.12-1-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.3tvxgWLBHO/epcr_2.3.12-1-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.3tvxgWLBHO/b1/epcr_2.3.12-1-9_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.3tvxgWLBHO/b2/epcr_2.3.12-1-9_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.245s) 0.245s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Jul 28 05:29:06 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Jul 28 05:29:06 UTC 2021 I: epcr from bullseye built successfully and reproducibly on arm64. Wed Jul 28 05:29:07 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Jul 28 05:29:07 UTC 2021 I: Submitting 8.0K b1/epcr_2.3.12-1-9_arm64.buildinfo.asc Wed Jul 28 05:29:09 UTC 2021 I: Submitting 8.0K b2/epcr_2.3.12-1-9_arm64.buildinfo.asc Wed Jul 28 05:29:11 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jul 28 05:29:11 UTC 2021 I: Done submitting .buildinfo files. Wed Jul 28 05:29:11 UTC 2021 I: Removing signed epcr_2.3.12-1-9_arm64.buildinfo.asc files: removed './b1/epcr_2.3.12-1-9_arm64.buildinfo.asc' removed './b2/epcr_2.3.12-1-9_arm64.buildinfo.asc'