Sat Jul 24 16:29:02 UTC 2021 I: starting to build clearcut/bullseye/arm64 on jenkins on '2021-07-24 16:28' Sat Jul 24 16:29:02 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/514/console.log Sat Jul 24 16:29:02 UTC 2021 I: Downloading source for bullseye/clearcut=1.0.9-6 --2021-07-24 16:29:02-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/clearcut/clearcut_1.0.9-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1991 (1.9K) Saving to: ‘clearcut_1.0.9-6.dsc’ 0K . 100% 264M=0s 2021-07-24 16:29:02 (264 MB/s) - ‘clearcut_1.0.9-6.dsc’ saved [1991/1991] Sat Jul 24 16:29:02 UTC 2021 I: clearcut_1.0.9-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: clearcut Binary: clearcut Architecture: any Version: 1.0.9-6 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://github.com/sheneman/clearcut Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/clearcut Vcs-Git: https://salsa.debian.org/med-team/clearcut.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12) Package-List: clearcut deb science optional arch=any Checksums-Sha1: f6e1ffa2084bb97334cb765ff4229efaac142110 349838 clearcut_1.0.9.orig.tar.gz f5d0cdf4318e3a66c7c38da40a93e84e56632697 5984 clearcut_1.0.9-6.debian.tar.xz Checksums-Sha256: b9d5a0d48af95d89fe0a8963123b9fc4fa25413cdadc9fcd28dce374173e3305 349838 clearcut_1.0.9.orig.tar.gz 0534da3fe59a500bcf41dd93c5f26bf91e2aa02e0fe83c88fc97965ff16d493d 5984 clearcut_1.0.9-6.debian.tar.xz Files: 03d0b443a2d4fd3482e6318c5ec2ccfd 349838 clearcut_1.0.9.orig.tar.gz 1a1b251ca3c28ccaaf1da38f0756bf95 5984 clearcut_1.0.9-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/KRo4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFWfA//bHqEwfIyoH7N46RyLXgN2WI9sz8nOX4J iEeoAF3jKNGanLYFCtYVY/EGtWGY0QAuakC7kCscmz8CJ+Z2qOw1dhpyFrV6SVsL DLwlHlKYt+9IcphtHjfKqHdjMJ0Dfzs8bXFShZRD8ZqiTwXxR37hYvVWuTESL3Eg lKXWkyHxnERI5zNJC63P138Dr1O4B03syxO2sIE3wEluHKEgtscupVwr9yNU7Gz9 15DjDaoFYJAgbgiry1KOyRX6b+M4xjka2QXQKKaMU2nxyfPOiu3OIE7KbzHTUX+Q J5WHzgQs3o49bp1Vpv9IU/Rq9aewwNcxJMJpaAPxHF8c1IKC5doro5/UQ1J1jYBv CQKKlS2maR28p9dBFbbbBFT2AbMrkL/Cqhjyw6TA9pzVi+xqnnBOEhm4MNCoJ/YA JJleNEi4nyz/cdJa8umPrSZJc5nTm3peX6cJPrBbQvjAr6+R6tRxovyiRm3uUEZR 7WUuywTaWSBSrv6+d8Nhxqp9vkt0xLptnz+FXg4trjpxrXf+wVTgli+MeI2IQu71 tvMiEFH66ugPOkkDsjw5eDyxdxydnZyfsYjgpI5zQVylKZwl1yODDvzHoq553MK4 CtcMDz2x/2Jv24GqCA3RuO4EOgC1ooPisyGZ3QWzvqO27JQdTIxYzar8SemYDtLw lV+k/a3wm2M= =7X+o -----END PGP SIGNATURE----- Sat Jul 24 16:29:02 UTC 2021 I: Checking whether the package is not for us Sat Jul 24 16:29:02 UTC 2021 I: Starting 1st build on remote node codethink9-arm64.debian.net. Sat Jul 24 16:29:02 UTC 2021 I: Preparing to do remote build '1' on codethink9-arm64.debian.net. Sat Jul 24 16:29:41 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Aug 26 10:52:05 -12 2022 I: pbuilder-time-stamp: 1661554325 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [clearcut_1.0.9-6.dsc] I: copying [./clearcut_1.0.9.orig.tar.gz] I: copying [./clearcut_1.0.9-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.C5yvvOnC/trustedkeys.kbx': General error gpgv: Signature made Fri Dec 4 02:24:14 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clearcut_1.0.9-6.dsc dpkg-source: info: extracting clearcut in clearcut-1.0.9 dpkg-source: info: unpacking clearcut_1.0.9.orig.tar.gz dpkg-source: info: unpacking clearcut_1.0.9-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mothur_trivial_patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying clear-errno-before-checking.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9146/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9146' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.WmbOdlRPS7/pbuilderrc_reug --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.WmbOdlRPS7/b1 --logfile b1/build.log clearcut_1.0.9-6.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink9-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 2021 more -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 26 03:48 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/9146/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 17.9 MB of archives. After unpacking 67.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Fetched 17.9 MB in 0s (48.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../10-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../23-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../25-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... 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Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/clearcut-1.0.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../clearcut_1.0.9-6_source.changes dpkg-buildpackage: info: source package clearcut dpkg-buildpackage: info: source version 1.0.9-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_auto_clean make -j8 clean make[1]: Entering directory '/build/clearcut-1.0.9' Makefile:124: warning: ignoring prerequisites on suffix rule definition rm -f *.o a.out *.a clearcut make[1]: Leaving directory '/build/clearcut-1.0.9' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/clearcut-1.0.9' Makefile:124: warning: ignoring prerequisites on suffix rule definition gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/build/clearcut-1.0.9=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer clearcut.c gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/build/clearcut-1.0.9=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer dist.c gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/build/clearcut-1.0.9=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer dmat.c gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/build/clearcut-1.0.9=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer fasta.c gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/build/clearcut-1.0.9=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer cmdargs.c gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/build/clearcut-1.0.9=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer prng.c gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/build/clearcut-1.0.9=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer getopt_long.c fasta.c: In function 'NJ_read_fasta': fasta.c:307:19: warning: variable 'x' set but not used [-Wunused-but-set-variable] 307 | long int index, x, seq; | ^ dist.c: In function 'NJ_DNA_jc_correction': dist.c:268:12: warning: variable 'k' set but not used [-Wunused-but-set-variable] 268 | long int k; | ^ clearcut.c: In function 'NJ_neighbor_joining': clearcut.c:1106:9: warning: variable 'min' set but not used [-Wunused-but-set-variable] 1106 | float min; | ^~~ clearcut.c: In function 'NJ_relaxed_nj': clearcut.c:1224:12: warning: variable 'q' set but not used [-Wunused-but-set-variable] 1224 | float p, q, x; | ^ dist.c: In function 'NJ_compute_dmat': dist.c:154:5: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 154 | strncpy(dmat->taxaname[i], alignment->titles[i], strlen(alignment->titles[i])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -o clearcut clearcut.o dist.o dmat.o fasta.o cmdargs.o prng.o getopt_long.o -lm -Wl,-z,relro make[1]: Leaving directory '/build/clearcut-1.0.9' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/clearcut-1.0.9' dh_compress -X.dist make[1]: Leaving directory '/build/clearcut-1.0.9' dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'clearcut' in '../clearcut_1.0.9-6_arm64.deb'. dpkg-deb: building package 'clearcut-dbgsym' in '../clearcut-dbgsym_1.0.9-6_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../clearcut_1.0.9-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9146 and its subdirectories I: Current time: Fri Aug 26 10:52:40 -12 2022 I: pbuilder-time-stamp: 1661554360 Sat Jul 24 16:29:42 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink12-arm64.debian.net. Sat Jul 24 16:29:42 UTC 2021 I: Preparing to do remote build '2' on codethink12-arm64.debian.net. Sat Jul 24 16:30:46 UTC 2021 I: Deleting $TMPDIR on codethink12-arm64.debian.net. Sat Jul 24 16:30:47 UTC 2021 I: clearcut_1.0.9-6_arm64.changes: Format: 1.8 Date: Fri, 04 Dec 2020 15:22:30 +0100 Source: clearcut Binary: clearcut clearcut-dbgsym Architecture: arm64 Version: 1.0.9-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clearcut - extremely efficient phylogenetic tree reconstruction Closes: 975947 Changes: clearcut (1.0.9-6) unstable; urgency=medium . * Fix homepage Closes: #975947 * Point watch file to Github (even if no tags are set yet) Checksums-Sha1: fefdd4ac2abea8794e5ef81881787d7a3cd89cf8 65044 clearcut-dbgsym_1.0.9-6_arm64.deb 279eddc19ae4454979b0c3d05fa635aca4721c30 4830 clearcut_1.0.9-6_arm64.buildinfo 5cb1bac0ec1cd3c03f7767c3eb1b09b87c38d501 280696 clearcut_1.0.9-6_arm64.deb Checksums-Sha256: fe1fd234ce4621c96531fe798e1d835c6e77c9eb0d4f18f3df4718f656febf21 65044 clearcut-dbgsym_1.0.9-6_arm64.deb 830289eae155a8b80c0caffc86779b29736ba36fa2866719b046e6ac1d15478c 4830 clearcut_1.0.9-6_arm64.buildinfo 06524490bed5afc7fbc85c60490e743274100934c3bd0ee830d6becb5b769466 280696 clearcut_1.0.9-6_arm64.deb Files: a5997e6b7697894c8d7b26de8799c33d 65044 debug optional clearcut-dbgsym_1.0.9-6_arm64.deb d6a12d6e49d906f6457e6bfc4e676808 4830 science optional clearcut_1.0.9-6_arm64.buildinfo 4342631011452e56d5bd7b4028c7680e 280696 science optional clearcut_1.0.9-6_arm64.deb Sat Jul 24 16:30:49 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.WmbOdlRPS7/clearcut_1.0.9-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.WmbOdlRPS7/clearcut_1.0.9-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.WmbOdlRPS7/clearcut_1.0.9-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.WmbOdlRPS7/b1/clearcut_1.0.9-6_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.WmbOdlRPS7/b2/clearcut_1.0.9-6_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.304s) 0.304s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Jul 24 16:30:51 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sat Jul 24 16:30:51 UTC 2021 I: clearcut from bullseye built successfully and reproducibly on arm64. Sat Jul 24 16:30:52 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Jul 24 16:30:52 UTC 2021 I: Submitting 8.0K b1/clearcut_1.0.9-6_arm64.buildinfo.asc Sat Jul 24 16:30:53 UTC 2021 I: Submitting 8.0K b2/clearcut_1.0.9-6_arm64.buildinfo.asc Sat Jul 24 16:30:54 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jul 24 16:30:54 UTC 2021 I: Done submitting .buildinfo files. Sat Jul 24 16:30:54 UTC 2021 I: Removing signed clearcut_1.0.9-6_arm64.buildinfo.asc files: removed './b1/clearcut_1.0.9-6_arm64.buildinfo.asc' removed './b2/clearcut_1.0.9-6_arm64.buildinfo.asc'