Sat Jul 10 23:24:39 UTC 2021 I: starting to build berkeley-express/bullseye/arm64 on jenkins on '2021-07-10 23:24' Sat Jul 10 23:24:39 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/19055/console.log Sat Jul 10 23:24:39 UTC 2021 I: Downloading source for bullseye/berkeley-express=1.5.3+dfsg-1 --2021-07-10 23:24:39-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/berkeley-express/berkeley-express_1.5.3+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2475 (2.4K) Saving to: ‘berkeley-express_1.5.3+dfsg-1.dsc’ 0K .. 100% 236M=0s 2021-07-10 23:24:39 (236 MB/s) - ‘berkeley-express_1.5.3+dfsg-1.dsc’ saved [2475/2475] Sat Jul 10 23:24:39 UTC 2021 I: berkeley-express_1.5.3+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: berkeley-express Binary: berkeley-express, berkeley-express-doc Architecture: any all Version: 1.5.3+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: http://bio.math.berkeley.edu/eXpress/index.html Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/berkeley-express Vcs-Git: https://salsa.debian.org/med-team/berkeley-express.git Testsuite: autopkgtest Testsuite-Triggers: bowtie, gzip, samtools Build-Depends: debhelper-compat (= 12), libboost-thread-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-date-time-dev, libbamtools-dev, libboost-tools-dev, libgoogle-perftools-dev [amd64 arm64 armel armhf i386 powerpc ppc64el], cmake, libprotobuf-dev, protobuf-compiler Package-List: berkeley-express deb science optional arch=any berkeley-express-doc deb doc optional arch=all Checksums-Sha1: a24eee0a32da390f2f75be7526bf6a9a971bd3a3 365872 berkeley-express_1.5.3+dfsg.orig.tar.xz 2b2a559e26f16507bb59ca6e85f334a768d98bd1 10336 berkeley-express_1.5.3+dfsg-1.debian.tar.xz Checksums-Sha256: f26e2f6e4e04671a64619f014ab2195f42d53fbac8b8b84f46082c5cdc6d845b 365872 berkeley-express_1.5.3+dfsg.orig.tar.xz aaa50dca79e3364536e271d1100d0da4ca430c77cbf974d49a85456ba190ecf4 10336 berkeley-express_1.5.3+dfsg-1.debian.tar.xz Files: cdb0c73b54ec20a662c14e6bfee0e384 365872 berkeley-express_1.5.3+dfsg.orig.tar.xz 7bbc1b8cf8bb8284497d69b2522bee13 10336 berkeley-express_1.5.3+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl3Rcy8ACgkQPCZ2P2xn 5uLiNQ//exdwxy7TRVrTyRp+eHN4zyTm3kOy4/xIqj7wWxQQ7e/x0SDTKXBZavdw yXksbCAaPuBWw17vnzm8bOD+WBDg4ed4IXKQGJh3GcOX98hTVwGqt7bxudwVgLJK WWW52uNHEUimgecqIVQ7P1b8XBgehuh6SGdrnMHkLf+gHMEJieJ01hiEt27+5OTF cDqTtnIFy2HS8O39jWepADAOTdsu4Xo3fDDvyOeyEOYcBg177XREZ9RDHXidTYhO SC/4jUro1I46BWp9WfU7jr09R58EFMxEcX7KpBpKbuHw/jdjFdI6ICYCylUojVjH mUu51yEbWlfm8itJXSHvqr4j3S2EFFytP/8ZeTSrB7McKXE3mWv9FDkF3E/CGBF4 rldqT/PZapWg6HH4XmZFDynTjUajhrfBb6f7QPM+U9g7HKUe+Aj90RSjgbM1Gdrz CVlgDG8lZN6tHlNtiNr/vINf9NaiZ49PKHk46QlbZYFnOOFuMeBPHzqN6vSF7OZd cDrhD/V6rCs98UDd3I26qcwjpcCBTnwZCfK27p9rksSFtyPhYm/dDtbROPE7aM9T osEpf4fGkQhkLnaoPv22zydZn9jJSb0ruDZUYc3Z1RE1hDYJgQyIGwSLBOHniu2A xPxBJouA8qKIYRciZNNtYnxJs0ZfJSq239x8E+suosbio8py/3g= =PSlR -----END PGP SIGNATURE----- Sat Jul 10 23:24:39 UTC 2021 I: Checking whether the package is not for us Sat Jul 10 23:24:39 UTC 2021 I: Starting 1st build on remote node codethink11-arm64.debian.net. Sat Jul 10 23:24:39 UTC 2021 I: Preparing to do remote build '1' on codethink11-arm64.debian.net. Sat Jul 10 23:28:15 UTC 2021 I: Deleting $TMPDIR on codethink11-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Aug 12 17:47:41 -12 2022 I: pbuilder-time-stamp: 1660369661 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [berkeley-express_1.5.3+dfsg-1.dsc] I: copying [./berkeley-express_1.5.3+dfsg.orig.tar.xz] I: copying [./berkeley-express_1.5.3+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.0c5B7pEr/trustedkeys.kbx': General error gpgv: Signature made Sun Nov 17 04:19:59 2019 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./berkeley-express_1.5.3+dfsg-1.dsc dpkg-source: info: extracting berkeley-express in berkeley-express-1.5.3+dfsg dpkg-source: info: unpacking berkeley-express_1.5.3+dfsg.orig.tar.xz dpkg-source: info: unpacking berkeley-express_1.5.3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling-fixes dpkg-source: info: applying fix-bamtools-path dpkg-source: info: applying drop-zlib dpkg-source: info: applying correct-debug-flags.patch dpkg-source: info: applying privacy-breach.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17947/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17947' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.vVxHcIaSAU/pbuilderrc_Tvgn --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.vVxHcIaSAU/b1 --logfile b1/build.log berkeley-express_1.5.3+dfsg-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink11-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 2021 more -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 12 03:47 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/17947/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libboost-thread-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-date-time-dev, libbamtools-dev, libboost-tools-dev, libgoogle-perftools-dev, cmake, libprotobuf-dev, protobuf-compiler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libbamtools-dev; however: Package libbamtools-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-tools-dev; however: Package libboost-tools-dev is not installed. pbuilder-satisfydepends-dummy depends on libgoogle-perftools-dev; however: Package libgoogle-perftools-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libprotobuf-dev; however: Package libprotobuf-dev is not installed. pbuilder-satisfydepends-dummy depends on protobuf-compiler; however: Package protobuf-compiler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbamtools-dev{a} libbamtools2.5.1{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-tools-dev{a} libboost1.74-dev{a} libboost1.74-tools-dev{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgoogle-perftools-dev{a} libgoogle-perftools4{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libprotobuf-dev{a} libprotobuf-lite23{a} libprotobuf23{a} libprotoc23{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtcmalloc-minimal4{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} protobuf-compiler{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 45.7 MB of archives. After unpacking 318 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2 [3673 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libbamtools2.5.1 arm64 2.5.1+dfsg-9 [142 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libbamtools-dev arm64 2.5.1+dfsg-9 [197 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-dev arm64 1.74.0-9 [9534 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libboost-atomic1.74.0 arm64 1.74.0-9 [244 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libboost-atomic1.74-dev arm64 1.74.0-9 [245 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libboost-chrono1.74.0 arm64 1.74.0-9 [251 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libboost-chrono1.74-dev arm64 1.74.0-9 [260 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time1.74.0 arm64 1.74.0-9 [241 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization1.74.0 arm64 1.74.0-9 [331 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization1.74-dev arm64 1.74.0-9 [381 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time1.74-dev arm64 1.74.0-9 [250 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time-dev arm64 1.74.0.3 [4332 B] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libboost-filesystem1.74.0 arm64 1.74.0-9 [278 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libboost-system1.74.0 arm64 1.74.0-9 [242 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libboost-system1.74-dev arm64 1.74.0-9 [243 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libboost-filesystem1.74-dev arm64 1.74.0-9 [303 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libboost-filesystem-dev arm64 1.74.0.3 [4368 B] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options1.74.0 arm64 1.74.0-9 [344 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options1.74-dev arm64 1.74.0-9 [382 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options-dev arm64 1.74.0.3 [4340 B] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libboost-system-dev arm64 1.74.0.3 [4468 B] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libboost-thread1.74.0 arm64 1.74.0-9 [276 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libboost-thread1.74-dev arm64 1.74.0-9 [291 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libboost-thread-dev arm64 1.74.0.3 [4356 B] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-tools-dev arm64 1.74.0-9 [1362 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libboost-tools-dev arm64 1.74.0.3 [4508 B] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libtcmalloc-minimal4 arm64 2.8.1-1 [89.1 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libgoogle-perftools4 arm64 2.8.1-1 [184 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libgoogle-perftools-dev arm64 2.8.1-1 [452 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libprotobuf23 arm64 3.12.4-1 [780 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libprotobuf-lite23 arm64 3.12.4-1 [218 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libprotobuf-dev arm64 3.12.4-1 [1163 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libprotoc23 arm64 3.12.4-1 [703 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 protobuf-compiler arm64 3.12.4-1 [74.9 kB] Fetched 45.7 MB in 1s (33.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../05-libncurses6_6.2+20201114-2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../06-libprocps8_2%3a3.3.17-5_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a3.3.17-5_arm64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../10-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../13-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-14_all.deb ... 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Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../22-libarchive13_3.4.3-2+b1_arm64.deb ... Unpacking libarchive13:arm64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../23-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../24-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../25-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../26-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../27-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../28-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../29-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../30-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../31-libcurl4_7.74.0-1.3+b1_arm64.deb ... Unpacking libcurl4:arm64 (7.74.0-1.3+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../32-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... 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Preparing to unpack .../39-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../40-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../41-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../42-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../43-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../44-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../45-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../46-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../47-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../48-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../49-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libbamtools2.5.1:arm64. Preparing to unpack .../50-libbamtools2.5.1_2.5.1+dfsg-9_arm64.deb ... Unpacking libbamtools2.5.1:arm64 (2.5.1+dfsg-9) ... Selecting previously unselected package libbamtools-dev:arm64. Preparing to unpack .../51-libbamtools-dev_2.5.1+dfsg-9_arm64.deb ... Unpacking libbamtools-dev:arm64 (2.5.1+dfsg-9) ... Selecting previously unselected package libboost1.74-dev:arm64. Preparing to unpack .../52-libboost1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-atomic1.74.0:arm64. Preparing to unpack .../53-libboost-atomic1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-atomic1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-atomic1.74-dev:arm64. Preparing to unpack .../54-libboost-atomic1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-atomic1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-chrono1.74.0:arm64. Preparing to unpack .../55-libboost-chrono1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-chrono1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-chrono1.74-dev:arm64. Preparing to unpack .../56-libboost-chrono1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-chrono1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-date-time1.74.0:arm64. Preparing to unpack .../57-libboost-date-time1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-date-time1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-serialization1.74.0:arm64. Preparing to unpack .../58-libboost-serialization1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-serialization1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-serialization1.74-dev:arm64. Preparing to unpack .../59-libboost-serialization1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-serialization1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-date-time1.74-dev:arm64. Preparing to unpack .../60-libboost-date-time1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-date-time1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-date-time-dev:arm64. Preparing to unpack .../61-libboost-date-time-dev_1.74.0.3_arm64.deb ... Unpacking libboost-date-time-dev:arm64 (1.74.0.3) ... Selecting previously unselected package libboost-filesystem1.74.0:arm64. Preparing to unpack .../62-libboost-filesystem1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-filesystem1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-system1.74.0:arm64. Preparing to unpack .../63-libboost-system1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-system1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-system1.74-dev:arm64. Preparing to unpack .../64-libboost-system1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-system1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-filesystem1.74-dev:arm64. Preparing to unpack .../65-libboost-filesystem1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-filesystem1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-filesystem-dev:arm64. Preparing to unpack .../66-libboost-filesystem-dev_1.74.0.3_arm64.deb ... Unpacking libboost-filesystem-dev:arm64 (1.74.0.3) ... Selecting previously unselected package libboost-program-options1.74.0:arm64. Preparing to unpack .../67-libboost-program-options1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-program-options1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-program-options1.74-dev:arm64. Preparing to unpack .../68-libboost-program-options1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-program-options1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-program-options-dev:arm64. Preparing to unpack .../69-libboost-program-options-dev_1.74.0.3_arm64.deb ... Unpacking libboost-program-options-dev:arm64 (1.74.0.3) ... 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I: Building the package I: Running cd /build/berkeley-express-1.5.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../berkeley-express_1.5.3+dfsg-1_source.changes dpkg-buildpackage: info: source package berkeley-express dpkg-buildpackage: info: source version 1.5.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg' dh_clean src/config.h make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg' debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.39") found components: thread system filesystem program_options date_time -- Found GPERFTOOLS_TCMALLOC: /usr/lib/aarch64-linux-gnu/libtcmalloc.so -- Found Protobuf: /usr/lib/aarch64-linux-gnu/libprotobuf.so;-lpthread (found version "3.12.4") -- Do not try to find libbamtools.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/berkeley-express-1.5.3+dfsg -B/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' [ 5%] Running cpp protocol buffer compiler on /build/berkeley-express-1.5.3+dfsg/src/targets.proto cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/protoc --cpp_out /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src -I /build/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-1.5.3+dfsg/src/targets.proto [ 11%] Running cpp protocol buffer compiler on /build/berkeley-express-1.5.3+dfsg/src/alignments.proto cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/protoc --cpp_out /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src -I /build/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-1.5.3+dfsg/src/alignments.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: targets.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: alignments.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/berkeley-express-1.5.3+dfsg /build/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= Dependee "/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake" is newer than depender "/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/express.dir/depend.internal". Dependee "/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/express.dir/depend.internal". 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src/CMakeFiles/express.dir/mismatchmodel.cpp.o cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/mismatchmodel.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/mismatchmodel.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 66%] Building CXX object src/CMakeFiles/express.dir/robertsfilter.cpp.o cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/robertsfilter.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/robertsfilter.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 72%] Building CXX object src/CMakeFiles/express.dir/sequence.cpp.o cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/sequence.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/sequence.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 77%] Building CXX object src/CMakeFiles/express.dir/targets.cpp.o cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/targets.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/targets.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 83%] Building CXX object src/CMakeFiles/express.dir/threadsafety.cpp.o cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/threadsafety.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/threadsafety.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 88%] Building CXX object src/CMakeFiles/express.dir/alignments.pb.cc.o cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/alignments.pb.cc.o -c /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src/alignments.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 94%] Building CXX object src/CMakeFiles/express.dir/targets.pb.cc.o cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/targets.pb.cc.o -c /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src/targets.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [100%] Linking CXX executable express cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/express.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/express.dir/biascorrection.cpp.o CMakeFiles/express.dir/bundles.cpp.o CMakeFiles/express.dir/directiondetector.cpp.o CMakeFiles/express.dir/fragments.cpp.o CMakeFiles/express.dir/lengthdistribution.cpp.o CMakeFiles/express.dir/main.cpp.o CMakeFiles/express.dir/mapparser.cpp.o CMakeFiles/express.dir/markovmodel.cpp.o CMakeFiles/express.dir/mismatchmodel.cpp.o CMakeFiles/express.dir/robertsfilter.cpp.o CMakeFiles/express.dir/sequence.cpp.o CMakeFiles/express.dir/targets.cpp.o CMakeFiles/express.dir/threadsafety.cpp.o CMakeFiles/express.dir/alignments.pb.cc.o CMakeFiles/express.dir/targets.pb.cc.o -o express /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.74.0 /usr/lib/aarch64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/aarch64-linux-gnu/libboost_date_time.so.1.74.0 -lbamtools -lprotobuf -lpthread -lrt /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.74.0 -lpthread make[3]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' [100%] Built target express make[2]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/berkeley-express-1.5.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/berkeley-express-1.5.3+dfsg -B/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' cd /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/berkeley-express-1.5.3+dfsg /build/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build make[3]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/express.dir/build'. make[3]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' [100%] Built target express make[2]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/berkeley-express-1.5.3+dfsg/debian/tmp/usr/bin/express make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg' dh_compress --exclude=express-doc.pdf make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg' dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'berkeley-express' in '../berkeley-express_1.5.3+dfsg-1_arm64.deb'. dpkg-deb: building package 'berkeley-express-doc' in '../berkeley-express-doc_1.5.3+dfsg-1_all.deb'. dpkg-deb: building package 'berkeley-express-dbgsym' in '../berkeley-express-dbgsym_1.5.3+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../berkeley-express_1.5.3+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17947 and its subdirectories I: Current time: Fri Aug 12 17:51:09 -12 2022 I: pbuilder-time-stamp: 1660369869 Sat Jul 10 23:28:16 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Sat Jul 10 23:28:16 UTC 2021 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Sat Jul 10 23:30:37 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Sat Jul 10 23:30:38 UTC 2021 I: berkeley-express_1.5.3+dfsg-1_arm64.changes: Format: 1.8 Date: Sun, 17 Nov 2019 17:17:25 +0100 Source: berkeley-express Binary: berkeley-express berkeley-express-dbgsym berkeley-express-doc Architecture: arm64 all Version: 1.5.3+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: berkeley-express - Streaming quantification for high-throughput sequencing berkeley-express-doc - Documentation for RNA-Seq tool eXpress Changes: berkeley-express (1.5.3+dfsg-1) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. . [ Michael R. Crusoe ] * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 * -doc: Include the sample data * remove the version check for privacy Checksums-Sha1: a4e0af5b4e8a0a9e96f623316055cea35ae2ec85 4363728 berkeley-express-dbgsym_1.5.3+dfsg-1_arm64.deb 69707d8e9d29bc6b8e53b7ef96b5effb1f96f9fc 706664 berkeley-express-doc_1.5.3+dfsg-1_all.deb 2aab988061c9925584800b994d97671c8fe11cae 7345 berkeley-express_1.5.3+dfsg-1_arm64.buildinfo 426351fbb0dba3e9ecfdb4e11525ee946f604436 215420 berkeley-express_1.5.3+dfsg-1_arm64.deb Checksums-Sha256: 8574857b5f455f3dab89e89f405dd14cc3fe2b6151112bd9cda5daa34ff21bdf 4363728 berkeley-express-dbgsym_1.5.3+dfsg-1_arm64.deb ceb8b123fe4103bb28ddff5d2374687fee0c63986369f7a51a3c34eb7d23b876 706664 berkeley-express-doc_1.5.3+dfsg-1_all.deb f1ca945f292624a4169d1f627a98172de5247d89ee3171d99a2b66c7d99d265b 7345 berkeley-express_1.5.3+dfsg-1_arm64.buildinfo 2c6294958a53701007926eb58294b5b3e2ecf2e222b4843c696f0f8fcf6c36d5 215420 berkeley-express_1.5.3+dfsg-1_arm64.deb Files: 6a499c527fd0cbcdf68c50d32e1b0d33 4363728 debug optional berkeley-express-dbgsym_1.5.3+dfsg-1_arm64.deb f0ce7412958c92d5baa210a577855b0d 706664 doc optional berkeley-express-doc_1.5.3+dfsg-1_all.deb f0d2150ce8a8cc6c4ba70bc0813f2c29 7345 science optional berkeley-express_1.5.3+dfsg-1_arm64.buildinfo 88b3817a094d2e1ec9cf6514e2cbeca0 215420 science optional berkeley-express_1.5.3+dfsg-1_arm64.deb Sat Jul 10 23:30:39 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.vVxHcIaSAU/berkeley-express_1.5.3+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.vVxHcIaSAU/berkeley-express_1.5.3+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.vVxHcIaSAU/berkeley-express_1.5.3+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.vVxHcIaSAU/b1/berkeley-express_1.5.3+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.vVxHcIaSAU/b2/berkeley-express_1.5.3+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.366s) 0.366s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.095s) 0.095s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Jul 10 23:30:41 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sat Jul 10 23:30:41 UTC 2021 I: berkeley-express from bullseye built successfully and reproducibly on arm64. Sat Jul 10 23:30:42 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Jul 10 23:30:42 UTC 2021 I: Submitting 12K b1/berkeley-express_1.5.3+dfsg-1_arm64.buildinfo.asc Sat Jul 10 23:30:43 UTC 2021 I: Submitting 12K b2/berkeley-express_1.5.3+dfsg-1_arm64.buildinfo.asc Sat Jul 10 23:30:45 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jul 10 23:30:45 UTC 2021 I: Done submitting .buildinfo files. Sat Jul 10 23:30:45 UTC 2021 I: Removing signed berkeley-express_1.5.3+dfsg-1_arm64.buildinfo.asc files: removed './b1/berkeley-express_1.5.3+dfsg-1_arm64.buildinfo.asc' removed './b2/berkeley-express_1.5.3+dfsg-1_arm64.buildinfo.asc'