Mon Aug 16 15:31:37 UTC 2021 I: starting to build andi/bullseye/arm64 on jenkins on '2021-08-16 15:31' Mon Aug 16 15:31:37 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_13/7480/console.log Mon Aug 16 15:31:37 UTC 2021 I: Downloading source for bullseye/andi=0.13-3 --2021-08-16 15:31:38-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/andi/andi_0.13-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2010 (2.0K) Saving to: ‘andi_0.13-3.dsc’ 0K . 100% 227M=0s 2021-08-16 15:31:38 (227 MB/s) - ‘andi_0.13-3.dsc’ saved [2010/2010] Mon Aug 16 15:31:38 UTC 2021 I: andi_0.13-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: andi Binary: andi Architecture: any Version: 0.13-3 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl Homepage: https://github.com/EvolBioInf/andi Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/andi Vcs-Git: https://salsa.debian.org/med-team/andi.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 12), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev Package-List: andi deb science optional arch=any Checksums-Sha1: 6c6a0b02dd4084162d135dda3d0e7609fbddf613 531413 andi_0.13.orig.tar.gz 0b9bd66c1c93ec5cb1520b0a99e7a3875f6fdbc1 11128 andi_0.13-3.debian.tar.xz Checksums-Sha256: 3fb11f5399efdcbf98ecbbaa95b1a6cd98f887cf78554e460dc3f18d4880ae3e 531413 andi_0.13.orig.tar.gz b5253c49e97ae6c2d5e2b31a3e85640ce42406ab671f589eb3c2e6d16ef4f063 11128 andi_0.13-3.debian.tar.xz Files: 5918d4786535aa4e3e62279bf79fba76 531413 andi_0.13.orig.tar.gz 8520b1640670707ea90c48cb8b92541c 11128 andi_0.13-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6K9NMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtECrQ/+OjsOuPLt2CE4u2a+Ogm4cfMkQBlO6M9o x7FxHzZdprTH+dmknPvK7vw5vFXm+nPLcWC1DGqP9rr+EhGSt3w+BmxhqzG2IecJ rTPdSzTIjt2uaY+G5GSl4ePnq4rdpYkJ+UflKBR22dlFpQjxPUP6Ij5IKoae/gfk 3O0q9PJtrkjJp+48i9WJEYTA6zO0kDwrY9nuwtX0h+WNOR27c8j6z1KIZioKjSFD XTKJqT3h3tBH2pnkbyn/54AG8QGP1D1yXgjfalIFXtJeZVeut1l4XDmMCIL1Chgy xGLDkSkleXiIzkmXmJClXZX5XYmgkn7wC2MmL3O+zIU/pU7Lp821hWhMWVJIBRZ9 ZE3VTgKk+8DHOdtjwZLQG1a7YKOATnuOhBmkrugkodmeOZOc83sKPWsp5mxsmarD ITH26mM8NjN0tzwFKipJRCdvNhMk3Y4YT93lB/9OkkrgZ9mSpGsUummfR+OPSpNz astpu6Is1wcaByzbo2twSxQxvsJvgLC6UPJQJUYM4IVUmXQRPlM2GFCXefkvzZt3 ymE0+DEfOnmTLYRaSSeCBc5bJLM/kTErvgmg3sXt4+wcq4fQI83tZV4G0Nrtjk/N 7RPT6eN37KEo6TqA/ZyAti1hO//szmPKYA+SdfBEMWXsb0kxQcm1Q4RbxXHX15Is ZoajrQ+7ZWo= =ezOV -----END PGP SIGNATURE----- Mon Aug 16 15:31:38 UTC 2021 I: Checking whether the package is not for us Mon Aug 16 15:31:38 UTC 2021 I: Starting 1st build on remote node codethink12-arm64.debian.net. Mon Aug 16 15:31:38 UTC 2021 I: Preparing to do remote build '1' on codethink12-arm64.debian.net. Mon Aug 16 15:34:35 UTC 2021 I: Deleting $TMPDIR on codethink12-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 16 03:31:42 -12 2021 I: pbuilder-time-stamp: 1629127902 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [andi_0.13-3.dsc] I: copying [./andi_0.13.orig.tar.gz] I: copying [./andi_0.13-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.8epUv7dI/trustedkeys.kbx': General error gpgv: Signature made Sun Apr 5 21:22:27 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./andi_0.13-3.dsc dpkg-source: info: extracting andi in andi-0.13 dpkg-source: info: unpacking andi_0.13.orig.tar.gz dpkg-source: info: unpacking andi_0.13-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32190/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32190' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.5U6mAZUb5S/pbuilderrc_ifPm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.5U6mAZUb5S/b1 --logfile b1/build.log andi_0.13-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink12-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 14 21:25 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/32190/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmount-dev{a} libmpdec3{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix2{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libselinux1-dev{a} libsepol1-dev{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pkgconf{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 33.3 MB of archives. After unpacking 136 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 uuid-dev arm64 2.36.1-8 [99.4 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libblkid-dev arm64 2.36.1-8 [229 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libdivsufsort3 arm64 2.0.1-5 [38.9 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libdivsufsort-dev arm64 2.0.1-5 [19.1 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libffi-dev arm64 3.3-6 [53.2 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-data all 2.66.8-1 [1164 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-bin arm64 2.66.8-1 [137 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-dev-bin arm64 2.66.8-1 [177 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libsepol1-dev arm64 3.1-1 [329 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libpcre2-16-0 arm64 10.36-2 [202 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libpcre2-32-0 arm64 10.36-2 [193 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libpcre2-posix2 arm64 10.36-2 [49.0 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libpcre2-dev arm64 10.36-2 [645 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libselinux1-dev arm64 3.1-3 [171 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libmount-dev arm64 2.36.1-8 [77.8 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libpcre16-3 arm64 2:8.39-13 [236 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libpcre32-3 arm64 2:8.39-13 [229 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libpcrecpp0v5 arm64 2:8.39-13 [151 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libpcre3-dev arm64 2:8.39-13 [579 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libpkgconf3 arm64 1.7.4~git20210206+dcf529b-3 [34.4 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 pkgconf arm64 1.7.4~git20210206+dcf529b-3 [41.3 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-dev arm64 2.66.8-1 [1592 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libgslcblas0 arm64 2.6+dfsg-2 [73.4 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libgsl25 arm64 2.6+dfsg-2 [812 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libgsl-dev arm64 2.6+dfsg-2 [1006 kB] Fetched 33.3 MB in 1s (42.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:arm64. 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Selecting previously unselected package libpcre16-3:arm64. Preparing to unpack .../45-libpcre16-3_2%3a8.39-13_arm64.deb ... Unpacking libpcre16-3:arm64 (2:8.39-13) ... Selecting previously unselected package libpcre32-3:arm64. Preparing to unpack .../46-libpcre32-3_2%3a8.39-13_arm64.deb ... Unpacking libpcre32-3:arm64 (2:8.39-13) ... Selecting previously unselected package libpcrecpp0v5:arm64. Preparing to unpack .../47-libpcrecpp0v5_2%3a8.39-13_arm64.deb ... Unpacking libpcrecpp0v5:arm64 (2:8.39-13) ... Selecting previously unselected package libpcre3-dev:arm64. Preparing to unpack .../48-libpcre3-dev_2%3a8.39-13_arm64.deb ... Unpacking libpcre3-dev:arm64 (2:8.39-13) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../49-libpkgconf3_1.7.4~git20210206+dcf529b-3_arm64.deb ... Unpacking libpkgconf3:arm64 (1.7.4~git20210206+dcf529b-3) ... Selecting previously unselected package pkgconf. Preparing to unpack .../50-pkgconf_1.7.4~git20210206+dcf529b-3_arm64.deb ... Adding 'diversion of /usr/bin/pkg-config to /usr/bin/pkg-config.real by pkgconf' Adding 'diversion of /usr/share/aclocal/pkg.m4 to /usr/share/aclocal/pkg.real.m4 by pkgconf' Adding 'diversion of /usr/share/man/man1/pkg-config.1.gz to /usr/share/man/man1/pkg-config.real.1.gz by pkgconf' Adding 'diversion of /usr/share/pkg-config-crosswrapper to /usr/share/pkg-config-crosswrapper.real by pkgconf' Unpacking pkgconf (1.7.4~git20210206+dcf529b-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../51-zlib1g-dev_1%3a1.2.11.dfsg-2_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Selecting previously unselected package libglib2.0-dev:arm64. Preparing to unpack .../52-libglib2.0-dev_2.66.8-1_arm64.deb ... Unpacking libglib2.0-dev:arm64 (2.66.8-1) ... Selecting previously unselected package libgslcblas0:arm64. Preparing to unpack .../53-libgslcblas0_2.6+dfsg-2_arm64.deb ... Unpacking libgslcblas0:arm64 (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:arm64. Preparing to unpack .../54-libgsl25_2.6+dfsg-2_arm64.deb ... Unpacking libgsl25:arm64 (2.6+dfsg-2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../55-libgsl-dev_2.6+dfsg-2_arm64.deb ... Unpacking libgsl-dev (2.6+dfsg-2) ... Setting up media-types (4.0.0) ... Setting up libpcrecpp0v5:arm64 (2:8.39-13) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:arm64 (2:8.39-13) ... Setting up libicu67:arm64 (67.1-7) ... Setting up libgslcblas0:arm64 (2.6+dfsg-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:arm64 (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libsepol1-dev:arm64 (3.1-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libffi-dev:arm64 (3.3-6) ... Setting up libpcre2-16-0:arm64 (10.36-2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:arm64 (10.36-2) ... Setting up libglib2.0-data (2.66.8-1) ... Setting up libpkgconf3:arm64 (1.7.4~git20210206+dcf529b-3) ... Setting up uuid-dev:arm64 (2.36.1-8) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libpcre32-3:arm64 (2:8.39-13) ... Setting up autopoint (0.21-4) ... Setting up libpcre2-posix2:arm64 (10.36-2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libdivsufsort3:arm64 (2.0.1-5) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libdivsufsort-dev:arm64 (2.0.1-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libblkid-dev:arm64 (2.36.1-8) ... Setting up gettext (0.21-4) ... Setting up libgsl-dev (2.6+dfsg-2) ... Setting up libpcre2-dev:arm64 (10.36-2) ... Setting up libtool (2.4.6-15) ... Setting up libselinux1-dev:arm64 (3.1-3) ... Setting up libpcre3-dev:arm64 (2:8.39-13) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up libglib2.0-bin (2.66.8-1) ... Setting up m4 (1.4.18-5) ... Setting up pkgconf (1.7.4~git20210206+dcf529b-3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libmount-dev:arm64 (2.36.1-8) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up libglib2.0-dev-bin (2.66.8-1) ... Setting up libglib2.0-dev:arm64 (2.66.8-1) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/andi-0.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../andi_0.13-3_source.changes dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.13-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Fabian Klötzl dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:4: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/build/andi-0.13' dh_auto_configure -- --enable-unit-tests --with-seed=123 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for g++ option to support OpenMP... -fopenmp checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking divsufsort.h usability... yes checking divsufsort.h presence... yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GLIB... yes checking whether g++ supports C++11 features by default... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strndup... yes checking for strcasecmp... yes checking for strchr... yes checking for strrchr... yes checking for strchrnul... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/andi-0.13' dh_auto_build make -j8 make[1]: Entering directory '/build/andi-0.13' Making all in . make[2]: Entering directory '/build/andi-0.13' echo "Missing Git" > ChangeLog; if test -d ./.git; then \ which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \ fi make[2]: Leaving directory '/build/andi-0.13' Making all in libs make[2]: Entering directory '/build/andi-0.13/libs' gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a ar cru libpfasta.a libpfasta_a-pfasta.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libpfasta.a make[2]: Leaving directory '/build/andi-0.13/libs' Making all in opt make[2]: Entering directory '/build/andi-0.13/opt' rm -f libcompat.a ar cru libcompat.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcompat.a make[2]: Leaving directory '/build/andi-0.13/opt' Making all in src make[2]: Entering directory '/build/andi-0.13/src' make all-am make[3]: Entering directory '/build/andi-0.13/src' gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-process.o `test -f 'process.c' || echo './'`process.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-io.o `test -f 'io.c' || echo './'`io.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-model.o `test -f 'model.c' || echo './'`model.c process.c: In function 'anchor': process.c:114:30: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm make[3]: Leaving directory '/build/andi-0.13/src' make[2]: Leaving directory '/build/andi-0.13/src' Making all in docs make[2]: Entering directory '/build/andi-0.13/docs' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/andi-0.13/docs' Making all in test make[2]: Entering directory '/build/andi-0.13/test' gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_fasta.o test_fasta.cxx gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c ../src/sequence.c: In function 'normalize': ../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 279 | #pragma omp atomic | test_esa.c: In function 'setup': test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter] 46 | void setup( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'setup2': test_esa.c:71:45: warning: unused parameter 'test_data' [-Wunused-parameter] 71 | void setup2( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'teardown': test_esa.c:97:47: warning: unused parameter 'test_data' [-Wunused-parameter] 97 | void teardown( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'basic': test_esa.c:107:44: warning: unused parameter 'test_data' [-Wunused-parameter] 107 | void basic( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'normq_cached': test_esa.c:134:51: warning: unused parameter 'test_data' [-Wunused-parameter] 134 | void normq_cached( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'prefix': test_esa.c:176:45: warning: unused parameter 'test_data' [-Wunused-parameter] 176 | void prefix( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm ../src/process.c: In function 'anchor': ../src/process.c:114:30: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/andi-0.13/test' make[1]: Leaving directory '/build/andi-0.13' dh_auto_test make -j8 check VERBOSE=1 make[1]: Entering directory '/build/andi-0.13' Making check in . make[2]: Entering directory '/build/andi-0.13' make check-TESTS make[3]: Entering directory '/build/andi-0.13' make[4]: Entering directory '/build/andi-0.13' PASS: test/test_seq PASS: test/test_process PASS: test/nan.sh PASS: test/low_homo.sh PASS: test/test_join.sh PASS: test/test_extra.sh PASS: test/test_esa PASS: test/test_random.sh ============================================================================ Testsuite summary for andi 0.13 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/andi-0.13' make[3]: Leaving directory '/build/andi-0.13' make[2]: Leaving directory '/build/andi-0.13' Making check in libs make[2]: Entering directory '/build/andi-0.13/libs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.13/libs' Making check in opt make[2]: Entering directory '/build/andi-0.13/opt' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.13/opt' Making check in src make[2]: Entering directory '/build/andi-0.13/src' make[2]: Leaving directory '/build/andi-0.13/src' Making check in docs make[2]: Entering directory '/build/andi-0.13/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.13/docs' Making check in test make[2]: Entering directory '/build/andi-0.13/test' make test_esa test_seq test_fasta test_process make[3]: Entering directory '/build/andi-0.13/test' make[3]: 'test_esa' is up to date. make[3]: 'test_seq' is up to date. make[3]: 'test_fasta' is up to date. make[3]: 'test_process' is up to date. make[3]: Leaving directory '/build/andi-0.13/test' make[2]: Leaving directory '/build/andi-0.13/test' make[1]: Leaving directory '/build/andi-0.13' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j8 install DESTDIR=/build/andi-0.13/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/andi-0.13' Making install in . make[2]: Entering directory '/build/andi-0.13' make[3]: Entering directory '/build/andi-0.13' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/andi-0.13/debian/andi/usr/share/doc/andi' /usr/bin/install -c -m 644 andi-manual.pdf '/build/andi-0.13/debian/andi/usr/share/doc/andi' make[3]: Leaving directory '/build/andi-0.13' make[2]: Leaving directory '/build/andi-0.13' Making install in libs make[2]: Entering directory '/build/andi-0.13/libs' make[3]: Entering directory '/build/andi-0.13/libs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.13/libs' make[2]: Leaving directory '/build/andi-0.13/libs' Making install in opt make[2]: Entering directory '/build/andi-0.13/opt' make[3]: Entering directory '/build/andi-0.13/opt' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.13/opt' make[2]: Leaving directory '/build/andi-0.13/opt' Making install in src make[2]: Entering directory '/build/andi-0.13/src' make[3]: Entering directory '/build/andi-0.13/src' /bin/mkdir -p '/build/andi-0.13/debian/andi/usr/bin' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c andi '/build/andi-0.13/debian/andi/usr/bin' make[3]: Leaving directory '/build/andi-0.13/src' make[2]: Leaving directory '/build/andi-0.13/src' Making install in docs make[2]: Entering directory '/build/andi-0.13/docs' make[3]: Entering directory '/build/andi-0.13/docs' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/andi-0.13/debian/andi/usr/share/man/man1' /usr/bin/install -c -m 644 andi.1 '/build/andi-0.13/debian/andi/usr/share/man/man1' make[3]: Leaving directory '/build/andi-0.13/docs' make[2]: Leaving directory '/build/andi-0.13/docs' Making install in test make[2]: Entering directory '/build/andi-0.13/test' make[3]: Entering directory '/build/andi-0.13/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.13/test' make[2]: Leaving directory '/build/andi-0.13/test' make[1]: Leaving directory '/build/andi-0.13' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'andi' in '../andi_0.13-3_arm64.deb'. dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.13-3_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../andi_0.13-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32190 and its subdirectories I: Current time: Mon Aug 16 03:34:33 -12 2021 I: pbuilder-time-stamp: 1629128073 Mon Aug 16 15:34:36 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net. Mon Aug 16 15:34:36 UTC 2021 I: Preparing to do remote build '2' on codethink9-arm64.debian.net. Mon Aug 16 15:36:24 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net. Mon Aug 16 15:36:25 UTC 2021 I: andi_0.13-3_arm64.changes: Format: 1.8 Date: Mon, 06 Apr 2020 09:14:39 +0200 Source: andi Binary: andi andi-dbgsym Architecture: arm64 Version: 0.13-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Fabian Klötzl Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.13-3) unstable; urgency=medium . * Add build-essential as autopkgtests dependency Checksums-Sha1: 3136a37bb4be60fd948c2211f7072bffe060bd95 50412 andi-dbgsym_0.13-3_arm64.deb 30e837932fd6a5377f6af41483692211f034efd5 6109 andi_0.13-3_arm64.buildinfo d0053f378b4192100ddc25d4693733bd7471a690 463156 andi_0.13-3_arm64.deb Checksums-Sha256: 42ee5d90637b5e0c6bf9d12c972598b0744ff6dd6ee382f13a876e90e924f8d7 50412 andi-dbgsym_0.13-3_arm64.deb bd9a1d5411b189ab21091ef549a6b763789b5d4d9d3857b40730a9a4eefbe21b 6109 andi_0.13-3_arm64.buildinfo 71f6a8bd5b5c05b41d970c2920b59ef6f61f20b1773b83ad68caa030fce16751 463156 andi_0.13-3_arm64.deb Files: 00aae8be222cae86de38781157cdfce6 50412 debug optional andi-dbgsym_0.13-3_arm64.deb 26919933b22768ab9556260ee2df60e0 6109 science optional andi_0.13-3_arm64.buildinfo 6cee50976cfa4814bd5e73ad9f196c97 463156 science optional andi_0.13-3_arm64.deb Mon Aug 16 15:36:26 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.5U6mAZUb5S/andi_0.13-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.5U6mAZUb5S/andi_0.13-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.5U6mAZUb5S/andi_0.13-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.5U6mAZUb5S/b1/andi_0.13-3_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.5U6mAZUb5S/b2/andi_0.13-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.288s) 0.288s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Aug 16 15:36:28 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Mon Aug 16 15:36:28 UTC 2021 I: andi from bullseye built successfully and reproducibly on arm64. Mon Aug 16 15:36:29 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Aug 16 15:36:29 UTC 2021 I: Submitting 8.0K b1/andi_0.13-3_arm64.buildinfo.asc Mon Aug 16 15:36:30 UTC 2021 I: Submitting 8.0K b2/andi_0.13-3_arm64.buildinfo.asc Mon Aug 16 15:36:31 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Aug 16 15:36:31 UTC 2021 I: Done submitting .buildinfo files. Mon Aug 16 15:36:31 UTC 2021 I: Removing signed andi_0.13-3_arm64.buildinfo.asc files: removed './b1/andi_0.13-3_arm64.buildinfo.asc' removed './b2/andi_0.13-3_arm64.buildinfo.asc'