Fri Jul 9 02:45:53 UTC 2021 I: starting to build allelecount/bullseye/arm64 on jenkins on '2021-07-09 02:45' Fri Jul 9 02:45:53 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_22/30022/console.log Fri Jul 9 02:45:53 UTC 2021 I: Downloading source for bullseye/allelecount=4.2.1-1 --2021-07-09 02:45:53-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/allelecount/allelecount_4.2.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2399 (2.3K) Saving to: ‘allelecount_4.2.1-1.dsc’ 0K .. 100% 184M=0s 2021-07-09 02:45:53 (184 MB/s) - ‘allelecount_4.2.1-1.dsc’ saved [2399/2399] Fri Jul 9 02:45:53 UTC 2021 I: allelecount_4.2.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: allelecount Binary: allelecount, liballelecount-perl Architecture: any all Version: 4.2.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/cancerit/alleleCount Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/allelecount Vcs-Git: https://salsa.debian.org/med-team/allelecount.git Testsuite: autopkgtest, autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libhts-dev, libbz2-dev, libconst-fast-perl , libdevel-cover-perl , libfile-slurp-perl , libfile-which-perl , libipc-system-simple-perl , libpod-coverage-perl , libtest-fatal-perl (>= 0.013) , libtry-tiny-perl , perl Package-List: allelecount deb science optional arch=any liballelecount-perl deb perl optional arch=all Checksums-Sha1: e81f5f578e498fc74eb8e897a2ddf2ac6b892d44 1388983 allelecount_4.2.1.orig.tar.gz f38ed078ed58c70aa6872593cb3fc7945970c9d2 15184 allelecount_4.2.1-1.debian.tar.xz Checksums-Sha256: dbec2d47fb4fad8ead72f55c4b6e3c02b216cbed285c05617b62e9a38c32e400 1388983 allelecount_4.2.1.orig.tar.gz cb8440ddb6c1e476fe1a568c27df8cf586acf8194feb10993c4c8efc7f61d91e 15184 allelecount_4.2.1-1.debian.tar.xz Files: be3a782a78187a46cf005944c04c6666 1388983 allelecount_4.2.1.orig.tar.gz 1d2ff91491d0bc840bd242fc752c28eb 15184 allelecount_4.2.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl+5ApEUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGoXQ/+MgICnnnjqMxsaNnrdPjdce5mGOO+ Ir0iB1gMGLA8yWSpxw//WW7m7FB1OwYnSwTkPcRLgpk3SMvZdNQSJHbIrEQilaXq 3zZAwgXb9yzkowybxNw0qdarko8IIPV22HMC4gVObAeV7L4L29/jD9CZdOW4m02P L9okN0s0GuXe4rDFQOp0FndOW1+ZAMG+zdcaRPtQ1BkemHWIks+4QR4dqf2RxNZM MLYJnae3J5UdHmEF4Ci0RJjYg8VP2rQUuzWxSZ1d5/QmnWNjoGB5ZzL1N/W8w5iz 7XmY91EJFBgYAQmXP4NFXGRMpthrKXsp40Fpbop6TystREpkgeBN6vqBW+sVY2X4 FJYGiKKL97027SvbVFIEMR+B8g0BiHg9GzJxfG9kay7C1CwYqaKG0wEN0XxEDS1P +dNfbQJeCzeLOmrRerJ4PeJPEA1zNT/TEbJ/o5uUR9EmgjMJv/w7h5dcTwc6e3Q8 ynY45aw28tTyb0Ls7m96T2dfeX0evlUJk5BFg9TcvRdaLGdBP8+s0NTgJ4/yHTQj 72WV108LSPQ3gjVdK14y4Kgq5QtaWCa6B3d9KmK3p5cNa/EPJO50qJ6uQ6j2Gfd7 VTJKCoeEDKi8INBKWQOdRIOylRsFeaWlO+YyIaXJO/3cbbinT3uHWEJgjbtysyuX 9Irc+6e0rrWCS0I= =dsgi -----END PGP SIGNATURE----- Fri Jul 9 02:45:53 UTC 2021 I: Checking whether the package is not for us Fri Jul 9 02:45:53 UTC 2021 I: Starting 1st build on remote node codethink14-arm64.debian.net. Fri Jul 9 02:45:53 UTC 2021 I: Preparing to do remote build '1' on codethink14-arm64.debian.net. Fri Jul 9 02:46:44 UTC 2021 I: Deleting $TMPDIR on codethink14-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 8 14:45:58 -12 2021 I: pbuilder-time-stamp: 1625798758 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [allelecount_4.2.1-1.dsc] I: copying [./allelecount_4.2.1.orig.tar.gz] I: copying [./allelecount_4.2.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.Eb4cWa7h/trustedkeys.kbx': General error gpgv: Signature made Sat Nov 21 00:05:37 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./allelecount_4.2.1-1.dsc dpkg-source: info: extracting allelecount in allelecount-4.2.1 dpkg-source: info: unpacking allelecount_4.2.1.orig.tar.gz dpkg-source: info: unpacking allelecount_4.2.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19599/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='19599' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.v6TEFO6Xbg/pbuilderrc_Qv2K --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.v6TEFO6Xbg/b1 --logfile b1/build.log allelecount_4.2.1-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink14-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 7 21:25 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/19599/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhts-dev, libbz2-dev, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libpod-coverage-perl, libtest-fatal-perl (>= 0.013), libtry-tiny-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libconst-fast-perl; however: Package libconst-fast-perl is not installed. pbuilder-satisfydepends-dummy depends on libdevel-cover-perl; however: Package libdevel-cover-perl is not installed. pbuilder-satisfydepends-dummy depends on libfile-slurp-perl; however: Package libfile-slurp-perl is not installed. pbuilder-satisfydepends-dummy depends on libfile-which-perl; however: Package libfile-which-perl is not installed. pbuilder-satisfydepends-dummy depends on libipc-system-simple-perl; however: Package libipc-system-simple-perl is not installed. pbuilder-satisfydepends-dummy depends on libpod-coverage-perl; however: Package libpod-coverage-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-fatal-perl (>= 0.013); however: Package libtest-fatal-perl is not installed. pbuilder-satisfydepends-dummy depends on libtry-tiny-perl; however: Package libtry-tiny-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libb-debug-perl{a} libbrotli1{a} libbz2-dev{a} libconst-fast-perl{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdata-optlist-perl{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-cover-perl{a} libdevel-symdump-perl{a} libelf1{a} libfile-slurp-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhts-dev{a} libhts3{a} libicu67{a} libipc-system-simple-perl{a} libldap-2.4-2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libparams-util-perl{a} libpipeline1{a} libpod-coverage-perl{a} libpod-parser-perl{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-install-perl{a} libsub-override-perl{a} libtest-fatal-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libhttp-message-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtemplate-perl lynx publicsuffix wget 0 packages upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 25.2 MB of archives. After unpacking 81.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libb-debug-perl all 1.26-2 [11.4 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libbz2-dev arm64 1.0.8-4 [31.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libparams-util-perl arm64 1.102-1+b1 [25.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libdata-optlist-perl all 0.110-1.1 [10.8 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libconst-fast-perl all 0.014-1.1 [8552 B] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libcurl4-gnutls-dev arm64 7.74.0-1.3+b1 [419 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libdeflate-dev arm64 1.7-1 [44.5 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 liburi-perl all 5.08-1 [90.6 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libhtml-parser-perl arm64 3.75-1+b1 [103 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libdevel-cover-perl arm64 1.36-2+b1 [195 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libdevel-symdump-perl all 2.18-4 [17.5 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libfile-slurp-perl all 9999.32-1 [28.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libhts3 arm64 1.11-4 [346 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libhts-dev arm64 1.11-4 [3856 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libpod-parser-perl all 1.63-2 [96.1 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libpod-coverage-perl all 0.23-2 [22.1 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libtest-fatal-perl all 0.016-1 [13.3 kB] Fetched 25.2 MB in 1s (47.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... 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Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libb-debug-perl. Preparing to unpack .../31-libb-debug-perl_1.26-2_all.deb ... Unpacking libb-debug-perl (1.26-2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../32-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../33-libbz2-dev_1.0.8-4_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-4) ... 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Preparing to unpack .../66-libtest-fatal-perl_0.016-1_all.deb ... Unpacking libtest-fatal-perl (0.016-1) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up libfile-slurp-perl (9999.32-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libtest-fatal-perl (0.016-1) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libb-debug-perl (1.26-2) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libpod-parser-perl (1.63-2) ... Setting up autopoint (0.21-4) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up liblzma-dev:arm64 (5.2.5-2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:arm64 (1.9.0-2) ... Setting up libdevel-symdump-perl (2.18-4) ... Setting up libdeflate-dev:arm64 (1.7-1) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up liburi-perl (5.08-1) ... Setting up libbz2-dev:arm64 (1.0.8-4) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libpod-coverage-perl (0.23-2) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1.3+b1) ... Setting up libcurl4-gnutls-dev:arm64 (7.74.0-1.3+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libdevel-cover-perl (1.36-2+b1) ... Setting up libhts3:arm64 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:arm64 (1.11-4) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/allelecount-4.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../allelecount_4.2.1-1_source.changes dpkg-buildpackage: info: source package allelecount dpkg-buildpackage: info: source version 4.2.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/allelecount-4.2.1' dh_auto_clean --sourcedirectory=c cd c && make -j8 clean make[2]: Entering directory '/build/allelecount-4.2.1/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno make[2]: Leaving directory '/build/allelecount-4.2.1/c' dh_auto_clean --sourcedirectory=perl make[1]: Leaving directory '/build/allelecount-4.2.1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/allelecount-4.2.1' dh_auto_configure --sourcedirectory=c dh_auto_configure --sourcedirectory=perl cd perl && perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/build/allelecount-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/build/allelecount-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for alleleCount Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/allelecount-4.2.1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/allelecount-4.2.1' dh_auto_build --sourcedirectory=c cd c && make -j8 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/allelecount-4.2.1/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno mkdir -p ./bin mkdir -p ./htslib_tmp #Do some magic to ensure we compile ALLELECOUNT with the static libhts.a rather than libhts.so ln -fs /libhts.a ./htslib_tmp/libhts.a gcc -O3 -DALLELECOUNTER_VERSION='"4.2.1"' -g -O2 -fdebug-prefix-map=/build/allelecount-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic -c src/bam_access.c -o src/bam_access.o src/bam_access.c: In function ‘pileupCounts’: src/bam_access.c:132:56: warning: ‘pre_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 132 | if(!(p->is_del) && qual >= min_base_qual && (absent || pre_b != c)){ | ~~~~~~~~^~~~~~~~~~~~~~ gcc -O3 -DALLELECOUNTER_VERSION='"4.2.1"' -I/usr/local//include -Isrc/ -I/ -rdynamic -g -O2 -fdebug-prefix-map=/build/allelecount-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -o ./bin/alleleCounter ./src/bam_access.o -L./htslib_tmp -L/usr/local//lib -lhts -lpthread -lz -lbz2 -llzma -lm -ldl ./src/alleleCounter.c -Wl,-z,relro -Wl,-z,now gcc -O3 -DALLELECOUNTER_VERSION='"4.2.1"' -g -O2 -fdebug-prefix-map=/build/allelecount-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic ./src/bam_access.o -L./htslib_tmp -lhts -lpthread -lz -lbz2 -llzma -lm -ldl -L/usr/local//lib -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now tests/bam_access_tests.c -o tests/bam_access_tests tests/bam_access_tests.c: In function ‘test_bam_access_get_position_base_counts’: tests/bam_access_tests.c:45:6: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] 45 | int res = bam_access_get_position_base_counts(chr,pos,stats,0,NULL); | ^~~ sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS remove tmp hts location rm -rf ./htslib_tmp Binaries have been compiled. make[2]: Leaving directory '/build/allelecount-4.2.1/c' dh_auto_build --sourcedirectory=perl cd perl && make -j8 make[2]: Entering directory '/build/allelecount-4.2.1/perl' cp lib/Sanger/CGP/AlleleCount/Genotype.pm blib/lib/Sanger/CGP/AlleleCount/Genotype.pm cp lib/Sanger/CGP/AlleleCount.pm blib/lib/Sanger/CGP/AlleleCount.pm cp bin/alleleCounter.pl blib/script/alleleCounter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounter.pl Manifying 1 pod document Manifying 1 pod document make[2]: Leaving directory '/build/allelecount-4.2.1/perl' make[1]: Leaving directory '/build/allelecount-4.2.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/allelecount-4.2.1' dh_auto_test --sourcedirectory=c cd c && make -j8 test make[2]: Entering directory '/build/allelecount-4.2.1/c' sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS make[2]: Leaving directory '/build/allelecount-4.2.1/c' dh_auto_test --sourcedirectory=perl cd perl && make -j8 test TEST_VERBOSE=1 make[2]: Entering directory '/build/allelecount-4.2.1/perl' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/1_pm_compile.t .. ok 1 - use Sanger::CGP::AlleleCount; ok 2 - use Sanger::CGP::AlleleCount::Genotype; ok 3 - Check version inheritance exists (Sanger::CGP::AlleleCount) ok 4 - Check version inheritance exists (Sanger::CGP::AlleleCount::Genotype) ok 5 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' 1..5 ok t/2_pl_compile.t .. ok 1 - Compilation check: /build/allelecount-4.2.1/perl/t/../bin/alleleCounter.pl 1..1 ok t/genotype.t ...... ok 1 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' ok 2 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' ok 3 - Check execution of loci profile (BAM) ok 4 - Expected result for defaults (BAM) ok 5 - Check execution of loci profile (BAM, pbq=20) ok 6 - Expected result for defaults (BAM, pbq=20) ok 7 - Check execution of loci profile (BAM, mapq=1) ok 8 - Expected result for defaults (BAM, mapq=1) ok 9 - Check execution of snp6 loci profile (BAM) ok 10 - Expected result for defaults (BAM) ok 11 - Check execution of snp6 loci profile (BAM, pbq=20) ok 12 - Expected result for defaults (BAM, pbq=20) ok 13 - Check execution of snp6 loci profile (BAM, mapq=1) ok 14 - Expected result for defaults (BAM, mapq>0) ok 15 - Check execution of loci profile (CRAM) ok 16 - Expected result for defaults (CRAM) ok 17 - Check execution of loci profile (CRAM, pbq=20) ok 18 - Expected result for defaults (CRAM, pbq=20) ok 19 - Check execution of loci profile (CRAM, mapq=1) ok 20 - Expected result for defaults (CRAM, mapq=1) ok 21 - Check execution of snp6 loci profile (CRAM) ok 22 - Expected result for defaults (CRAM) ok 23 - Check execution of snp6 loci profile (CRAM, pbq=20) ok 24 - Expected result for defaults (CRAM, pbq=20) ok 25 - Check execution of snp6 loci profile (CRAM, mapq=1) ok 26 - Expected result for defaults (CRAM, mapq=1) 1..26 ok All tests successful. Files=3, Tests=32, 1 wallclock secs ( 0.05 usr 0.01 sys + 0.89 cusr 0.14 csys = 1.09 CPU) Result: PASS make[2]: Leaving directory '/build/allelecount-4.2.1/perl' make[1]: Leaving directory '/build/allelecount-4.2.1' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/allelecount-4.2.1' dh_auto_install --sourcedirectory=c dh_auto_install --sourcedirectory=perl cd perl && make -j8 install DESTDIR=/build/allelecount-4.2.1/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/build/allelecount-4.2.1/perl' Manifying 1 pod document Manifying 1 pod document Installing /build/allelecount-4.2.1/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount.pm Installing /build/allelecount-4.2.1/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/Genotype.pm Installing /build/allelecount-4.2.1/debian/tmp/usr/share/man/man1/alleleCounter.pl.1p Installing /build/allelecount-4.2.1/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm Installing /build/allelecount-4.2.1/debian/tmp/usr/bin/alleleCounter.pl make[2]: Leaving directory '/build/allelecount-4.2.1/perl' make[1]: Leaving directory '/build/allelecount-4.2.1' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'allelecount' in '../allelecount_4.2.1-1_arm64.deb'. dpkg-deb: building package 'allelecount-dbgsym' in '../allelecount-dbgsym_4.2.1-1_arm64.deb'. dpkg-deb: building package 'liballelecount-perl' in '../liballelecount-perl_4.2.1-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../allelecount_4.2.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19599 and its subdirectories I: Current time: Thu Jul 8 14:46:43 -12 2021 I: pbuilder-time-stamp: 1625798803 Fri Jul 9 02:46:45 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink11-arm64.debian.net. Fri Jul 9 02:46:45 UTC 2021 I: Preparing to do remote build '2' on codethink11-arm64.debian.net. Fri Jul 9 02:47:47 UTC 2021 I: Deleting $TMPDIR on codethink11-arm64.debian.net. Fri Jul 9 02:47:48 UTC 2021 I: allelecount_4.2.1-1_arm64.changes: Format: 1.8 Date: Sat, 21 Nov 2020 17:30:11 +0530 Source: allelecount Binary: allelecount allelecount-dbgsym liballelecount-perl Architecture: arm64 all Version: 4.2.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: allelecount - NGS copy number algorithms liballelecount-perl - Perl interface to NGS copy number algorithms Changes: allelecount (4.2.1-1) unstable; urgency=medium . * Team upload. * New upstream version Checksums-Sha1: 904250bf6ad4b31a5c003c62e42102f38df3ccfc 31204 allelecount-dbgsym_4.2.1-1_arm64.deb 372bd4fdd52b70bae7e4193edfe28e81af23c1ee 6501 allelecount_4.2.1-1_arm64.buildinfo 728b8a9fdfcac0f3ae5a8e4d3d95df454ffe68d4 27720 allelecount_4.2.1-1_arm64.deb 40d6e2a36734361b6a54b4bc97f4cc40137e6094 20944 liballelecount-perl_4.2.1-1_all.deb Checksums-Sha256: 5b4933d4ca8ab8a74e37c828e71baaab1574ae5d2b6e25478cba8cb0c1cf4876 31204 allelecount-dbgsym_4.2.1-1_arm64.deb 6942534d72e0766422b3b6085b7148d0c2c36bfecac81429043cedabd40a7521 6501 allelecount_4.2.1-1_arm64.buildinfo b439497e9c908138fab9a0d41613e8080b655d41aa17eac486832004202e9189 27720 allelecount_4.2.1-1_arm64.deb 79be34ab92f785bc1759fab6526936e9aadcebb1305d2673a5b438ee787b4783 20944 liballelecount-perl_4.2.1-1_all.deb Files: 601ece6379d745b380d9c9d6b062ee40 31204 debug optional allelecount-dbgsym_4.2.1-1_arm64.deb 6973e8008f4f360e51dfedeaf693921f 6501 science optional allelecount_4.2.1-1_arm64.buildinfo c6127acde618303630cfd708ea3c11b0 27720 science optional allelecount_4.2.1-1_arm64.deb 0abdbaf7f167b8e9ccb3ced7c3a61480 20944 perl optional liballelecount-perl_4.2.1-1_all.deb Fri Jul 9 02:47:49 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.v6TEFO6Xbg/allelecount_4.2.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.v6TEFO6Xbg/allelecount_4.2.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.v6TEFO6Xbg/allelecount_4.2.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.v6TEFO6Xbg/b1/allelecount_4.2.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.v6TEFO6Xbg/b2/allelecount_4.2.1-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.392s) 0.392s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.022s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jul 9 02:47:51 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Fri Jul 9 02:47:51 UTC 2021 I: allelecount from bullseye built successfully and reproducibly on arm64. Fri Jul 9 02:47:52 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jul 9 02:47:52 UTC 2021 I: Submitting 8.0K b1/allelecount_4.2.1-1_arm64.buildinfo.asc Fri Jul 9 02:47:53 UTC 2021 I: Submitting 8.0K b2/allelecount_4.2.1-1_arm64.buildinfo.asc Fri Jul 9 02:47:55 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jul 9 02:47:55 UTC 2021 I: Done submitting .buildinfo files. Fri Jul 9 02:47:55 UTC 2021 I: Removing signed allelecount_4.2.1-1_arm64.buildinfo.asc files: removed './b1/allelecount_4.2.1-1_arm64.buildinfo.asc' removed './b2/allelecount_4.2.1-1_arm64.buildinfo.asc'