Wed Nov 3 13:22:49 UTC 2021 I: starting to build wtdbg2/bullseye/amd64 on jenkins on '2021-11-03 13:22' Wed Nov 3 13:22:49 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_32/86248/console.log Wed Nov 3 13:22:49 UTC 2021 I: Downloading source for bullseye/wtdbg2=2.5-7 --2021-11-03 13:22:49-- http://cdn-fastly.deb.debian.org/debian/pool/main/w/wtdbg2/wtdbg2_2.5-7.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2079 (2.0K) Saving to: ‘wtdbg2_2.5-7.dsc’ 0K .. 100% 298M=0s 2021-11-03 13:22:49 (298 MB/s) - ‘wtdbg2_2.5-7.dsc’ saved [2079/2079] Wed Nov 3 13:22:49 UTC 2021 I: wtdbg2_2.5-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: wtdbg2 Binary: wtdbg2, wtdbg2-examples Architecture: any all Version: 2.5-7 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/ruanjue/wtdbg2 Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/wtdbg2 Vcs-Git: https://salsa.debian.org/med-team/wtdbg2.git Testsuite: autopkgtest Testsuite-Triggers: bwa, minimap2, samtools Build-Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev Package-List: wtdbg2 deb science optional arch=any wtdbg2-examples deb science optional arch=all Checksums-Sha1: 36e07424e7a08b2571ea8580e50e736c90458335 236627 wtdbg2_2.5.orig.tar.gz 2da3c398645d51cb9a3175f47d4d3cef273d8dce 121142812 wtdbg2_2.5-7.debian.tar.xz Checksums-Sha256: a2ffc8503d29f491a9a38ef63230d5b3c96db78377b5d25c91df511d0df06413 236627 wtdbg2_2.5.orig.tar.gz 755e2d3cb633deb5eeee647edfe0539308952b25d7583fd55f953710f6d0bc37 121142812 wtdbg2_2.5-7.debian.tar.xz Files: 0368caed7480192c42b1a4ffa1ddbb7c 236627 wtdbg2_2.5.orig.tar.gz 2fb70b48a1f4e0505c2a3ccb37ce2511 121142812 wtdbg2_2.5-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl9QwqoUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafHicA/1HBP38fMRxMWPw/JGulJTN8XvvXay 5A+ghtjA3ZoF25r5KL9R9Bw1PRRH+IkLbbyKEd+eMZI4KybpFh0SaxJjCckzpmOa hyC0GHhLqQOwTHv2BuBLwE2eV3Y0Y1gQlTgMmigM1panOgiZaAk4jgGPaxlZjAie aTiBQ942EScPaMxHS3aaZOeG9/W6L6WoG0JC/HSncnyfL9zJAGNfe7NI/J1XRITF QPL2OtvWe2G1LLfYDIRTH4cLKIUDaCdRidRaZUKipuXKeUkwAgIRceq4B2o/3sFq kraD5uRCYRFaEo+MaTxTbxOm/bS/uYPAbcTmSkHr4lXiqbUCepoMADXIQghXA+ks P0MIRGzNvHVyeOKvDTtMfDn6oLfsILfwf/C5FOJ1YvYRFlrTHvxQCo6hNpI7YT5O geraGvfcopDYE1BoNHxgv+H5JN7johx9rnmlKqkSZ3eUTJmfefpwHNzGpLQ5Rfzs 7HQuaALkRhXp/MA3BKFsDemrpFWPvNEuM5eEn61RExKIw1Y3/JsmxEEEJEqPIl1h fwDXE+Bd118Lurm8XJ16SU3UOfDsZ9SaY7hFTkmulr245R0tn+MJn07l4eik1GhB PSs5ewq6EjgQ9Dnn6DETT3Fk/gwA8UtDKNLYDpXqgf6bsFq6nY5J4IDYANAQv58H +Ad2/9a9IMsSfg== =TtLZ -----END PGP SIGNATURE----- Wed Nov 3 13:22:49 UTC 2021 I: Checking whether the package is not for us Wed Nov 3 13:22:49 UTC 2021 I: Starting 1st build on remote node ionos15-amd64.debian.net. Wed Nov 3 13:22:49 UTC 2021 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Wed Nov 3 13:27:38 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 6 07:45:54 -12 2022 I: pbuilder-time-stamp: 1670355954 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [wtdbg2_2.5-7.dsc] I: copying [./wtdbg2_2.5.orig.tar.gz] I: copying [./wtdbg2_2.5-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.qn673Xo2/trustedkeys.kbx': General error gpgv: Signature made Wed Sep 2 22:17:14 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./wtdbg2_2.5-7.dsc dpkg-source: info: extracting wtdbg2 in wtdbg2-2.5 dpkg-source: info: unpacking wtdbg2_2.5.orig.tar.gz dpkg-source: info: unpacking wtdbg2_2.5-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_install.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying simde dpkg-source: info: applying scripts-tweak I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2451549/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='bd8c3c9aa28c4ca597bf7b252128cd06' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2451549' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.O10gsLE5GB/pbuilderrc_272t --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.O10gsLE5GB/b1 --logfile b1/build.log wtdbg2_2.5-7.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 23 06:05 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/2451549/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsimde-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 18.8 MB of archives. After unpacking 72.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libsimde-dev all 0.7.2-4 [259 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Fetched 18.8 MB in 0s (79.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../10-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../23-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../25-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/wtdbg2-2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../wtdbg2_2.5-7_source.changes dpkg-buildpackage: info: source package wtdbg2 dpkg-buildpackage: info: source version 2.5-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[1]: Leaving directory '/build/wtdbg2-2.5' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/wtdbg2-2.5' sed -i 's/\/usr\/bin\/env perl/\/usr\/bin\/perl/' scripts/* sed -i 's/memeory/memory/' *.c *.h *.md sed -i 's/automaticly/automatically/' *.c sed -i 's/ouput/output/' *.c sed -i 's/vaule/value/' *.c sed -i 's/annonymous/anonymous/' *.h mkdir -p /build/wtdbg2-2.5/debian/wtdbg2/usr mkdir -p /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ export CFLAGS="-g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -m${SIMD}" ; \ make clean ; \ dh_auto_build -- SFX=-${SIMD} ; \ done make[2]: Entering directory '/build/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-avx2 make[2]: Entering directory '/build/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-avx2 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-avx2 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-avx2 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-avx2 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-avx2 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from wtdbg.c:20: wtdbg.h: In function ‘estimate_edge_length’: wtdbg.h:1926:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1926 | for(i=b,tot=0;iarray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-2.5' make[2]: Entering directory '/build/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-avx make[2]: Entering directory '/build/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-avx kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-avx wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-avx wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-avx wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-avx pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:5: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;marray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-2.5' make[2]: Entering directory '/build/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-sse4.1 make[2]: Entering directory '/build/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-sse4.1 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-sse4.1 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-sse4.1 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-sse4.1 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-sse4.1 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa.h:25, from wtpoa-cns.c:20: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from wtdbg.c:20: wtdbg.h: In function ‘estimate_edge_length’: wtdbg.h:1926:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1926 | for(i=b,tot=0;iarray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-2.5' make[2]: Entering directory '/build/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-ssse3 make[2]: Entering directory '/build/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-ssse3 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-ssse3 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-ssse3 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-ssse3 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-ssse3 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa.h:25, from wtpoa-cns.c:20: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:5: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;marray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-2.5' make[2]: Entering directory '/build/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-sse3 make[2]: Entering directory '/build/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-sse3 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-sse3 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-sse3 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-sse3 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-sse3 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:5: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;marray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-2.5' make[2]: Entering directory '/build/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-sse2 make[2]: Entering directory '/build/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-sse2 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-sse2 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-sse2 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-sse2 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-sse2 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:5: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;marray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-2.5' make[1]: Leaving directory '/build/wtdbg2-2.5' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/wtdbg2-2.5' dh_install -p wtdbg2 debian/bin/simd-dispatch /usr/lib/wtdbg2/ for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ export CFLAGS="-g -O2 -fdebug-prefix-map=/build/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -m${SIMD}" ; \ dh_auto_build -- SFX=-${SIMD} BIN=/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install ; \ done make -j16 "INSTALL=install --strip-program=true" SFX=-avx2 BIN=/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-2.5' mkdir -p /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-avx2 wtdbg2-avx2 wtdbg-cns-avx2 wtpoa-cns-avx2 pgzf-avx2 /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-avx2' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-avx2' 'wtdbg2-avx2' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-avx2' 'wtdbg-cns-avx2' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-avx2' 'wtpoa-cns-avx2' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-avx2' 'pgzf-avx2' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-avx2' make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-avx BIN=/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-2.5' mkdir -p /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-avx wtdbg2-avx wtdbg-cns-avx wtpoa-cns-avx pgzf-avx /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-avx' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-avx' 'wtdbg2-avx' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-avx' 'wtdbg-cns-avx' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-avx' 'wtpoa-cns-avx' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-avx' 'pgzf-avx' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-avx' make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-sse4.1 BIN=/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-2.5' mkdir -p /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-sse4.1 wtdbg2-sse4.1 wtdbg-cns-sse4.1 wtpoa-cns-sse4.1 pgzf-sse4.1 /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-sse4.1' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-sse4.1' 'wtdbg2-sse4.1' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-sse4.1' 'wtdbg-cns-sse4.1' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-sse4.1' 'wtpoa-cns-sse4.1' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-sse4.1' 'pgzf-sse4.1' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-sse4.1' make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-ssse3 BIN=/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-2.5' mkdir -p /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-ssse3 wtdbg2-ssse3 wtdbg-cns-ssse3 wtpoa-cns-ssse3 pgzf-ssse3 /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-ssse3' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-ssse3' 'wtdbg2-ssse3' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-ssse3' 'wtdbg-cns-ssse3' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-ssse3' 'wtpoa-cns-ssse3' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-ssse3' 'pgzf-ssse3' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-ssse3' make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-sse3 BIN=/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-2.5' mkdir -p /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-sse3 wtdbg2-sse3 wtdbg-cns-sse3 wtpoa-cns-sse3 pgzf-sse3 /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-sse3' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-sse3' 'wtdbg2-sse3' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-sse3' 'wtdbg-cns-sse3' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-sse3' 'wtpoa-cns-sse3' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-sse3' 'pgzf-sse3' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-sse3' make[2]: Leaving directory '/build/wtdbg2-2.5' make -j16 "INSTALL=install --strip-program=true" SFX=-sse2 BIN=/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-2.5' mkdir -p /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-sse2 wtdbg2-sse2 wtdbg-cns-sse2 wtpoa-cns-sse2 pgzf-sse2 /build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-sse2' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-sse2' 'wtdbg2-sse2' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-sse2' 'wtdbg-cns-sse2' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-sse2' 'wtpoa-cns-sse2' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-sse2' 'pgzf-sse2' -> '/build/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-sse2' make[2]: Leaving directory '/build/wtdbg2-2.5' mkdir -p /build/wtdbg2-2.5/debian/wtdbg2/usr/bin cd /build/wtdbg2-2.5/debian/wtdbg2/usr/bin \ && for prog in kbm2 pgzf wtdbg-cns wtdbg2 wtpoa-cns ; do \ ln -s ../lib/wtdbg2/simd-dispatch ${prog} ; done make[1]: Leaving directory '/build/wtdbg2-2.5' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'wtdbg2-examples' in '../wtdbg2-examples_2.5-7_all.deb'. dpkg-deb: building package 'wtdbg2-dbgsym' in '../wtdbg2-dbgsym_2.5-7_amd64.deb'. dpkg-deb: building package 'wtdbg2' in '../wtdbg2_2.5-7_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../wtdbg2_2.5-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2451549 and its subdirectories I: Current time: Tue Dec 6 07:50:36 -12 2022 I: pbuilder-time-stamp: 1670356236 Wed Nov 3 13:27:38 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Wed Nov 3 13:27:38 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Wed Nov 3 13:33:56 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Wed Nov 3 13:33:56 UTC 2021 I: wtdbg2_2.5-7_amd64.changes: Format: 1.8 Date: Thu, 03 Sep 2020 15:24:21 +0530 Source: wtdbg2 Binary: wtdbg2 wtdbg2-dbgsym wtdbg2-examples Architecture: amd64 all Version: 2.5-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: wtdbg2 - de novo sequence assembler for long noisy reads wtdbg2-examples - Examples for wtdbg - de novo sequence assembler Changes: wtdbg2 (2.5-7) unstable; urgency=medium . * Team Upload. * move wtdbg2-examples to "Suggests" * s/MIT/Expat (fix with cme) * Include run-unit-test script in examples binary Checksums-Sha1: 27070372c6ec948f6702438d77dd3241aa43720f 8477500 wtdbg2-dbgsym_2.5-7_amd64.deb 8d0c8379cd5c024dbed792f69e25d42836edd7af 121132968 wtdbg2-examples_2.5-7_all.deb 10b49d33b02c07dc19cf399d7a5f35957c8e36c7 5319 wtdbg2_2.5-7_amd64.buildinfo ea225773f9c52a8c0944085a4b010b607d5daa0d 694512 wtdbg2_2.5-7_amd64.deb Checksums-Sha256: 19c5a57d519c6d1d75f6b2d2b7ec2bd248654629f88a494a5837a2b7ebc57bf6 8477500 wtdbg2-dbgsym_2.5-7_amd64.deb d4ae37bd0fd3770696b529c1aba56d9c5d47d19290928a49a75a89d2bd353cc2 121132968 wtdbg2-examples_2.5-7_all.deb fe01d023b635be97765406743d1b08c60d2f6bc1279e7fdac354165a4feac0ec 5319 wtdbg2_2.5-7_amd64.buildinfo 90e58c85ec80ad90e39be085f6255f3b5c08d5f04859ac080987c14f9240b731 694512 wtdbg2_2.5-7_amd64.deb Files: 8ba08be36d9330aa3ba5e996d6706ef8 8477500 debug optional wtdbg2-dbgsym_2.5-7_amd64.deb 7096a3eb02d16f1b1749932d1ebeaa5f 121132968 science optional wtdbg2-examples_2.5-7_all.deb e530adfbac1b351beb8d78b0986bc613 5319 science optional wtdbg2_2.5-7_amd64.buildinfo e8d56bd71d23bb95d214d0b86aba18c1 694512 science optional wtdbg2_2.5-7_amd64.deb Wed Nov 3 13:34:25 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.O10gsLE5GB/wtdbg2_2.5-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.O10gsLE5GB/wtdbg2_2.5-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.O10gsLE5GB/wtdbg2_2.5-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.O10gsLE5GB/b1/wtdbg2_2.5-7_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.O10gsLE5GB/b2/wtdbg2_2.5-7_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.846s) 1.846s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 1.584s) 1.584s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Nov 3 13:34:30 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Wed Nov 3 13:34:30 UTC 2021 I: wtdbg2 from bullseye built successfully and reproducibly on amd64. Wed Nov 3 13:34:31 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Nov 3 13:34:31 UTC 2021 I: Submitting 8.0K b1/wtdbg2_2.5-7_amd64.buildinfo.asc Wed Nov 3 13:34:36 UTC 2021 I: Submitting 8.0K b2/wtdbg2_2.5-7_amd64.buildinfo.asc Wed Nov 3 13:34:37 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Nov 3 13:34:37 UTC 2021 I: Done submitting .buildinfo files. Wed Nov 3 13:34:37 UTC 2021 I: Removing signed wtdbg2_2.5-7_amd64.buildinfo.asc files: removed './b1/wtdbg2_2.5-7_amd64.buildinfo.asc' removed './b2/wtdbg2_2.5-7_amd64.buildinfo.asc'