Fri Jan 21 02:30:16 UTC 2022 I: starting to build vsearch/bullseye/amd64 on jenkins on '2022-01-21 02:30' Fri Jan 21 02:30:16 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_9/36301/console.log Fri Jan 21 02:30:16 UTC 2022 I: Downloading source for bullseye/vsearch=2.15.2-3 --2022-01-21 02:30:16-- http://cdn-fastly.deb.debian.org/debian/pool/main/v/vsearch/vsearch_2.15.2-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2219 (2.2K) Saving to: ‘vsearch_2.15.2-3.dsc’ 0K .. 100% 192M=0s 2022-01-21 02:30:16 (192 MB/s) - ‘vsearch_2.15.2-3.dsc’ saved [2219/2219] Fri Jan 21 02:30:16 UTC 2022 I: vsearch_2.15.2-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vsearch Binary: vsearch, vsearch-examples Architecture: amd64 arm64 kfreebsd-amd64 ppc64el Version: 2.15.2-3 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille , Nilesh Patra Homepage: https://github.com/torognes/vsearch/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/vsearch Vcs-Git: https://salsa.debian.org/med-team/vsearch.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, markdown, ghostscript, time Package-List: vsearch deb science optional arch=amd64,arm64,kfreebsd-amd64,ppc64el vsearch-examples deb science optional arch=amd64,arm64,kfreebsd-amd64,ppc64el Checksums-Sha1: 01385956a4dac55a81ff0685b2e320dc2b0632ce 242701 vsearch_2.15.2.orig.tar.gz ed82be8dba7815f94b20d9c46196babb8c2ac8c9 1631104 vsearch_2.15.2-3.debian.tar.xz Checksums-Sha256: ce821f5f870c00938ddc0938ba5a13f17e697a9ddd1d53cfbebd276ae4c640c8 242701 vsearch_2.15.2.orig.tar.gz 7f3ea941e028aae9df9b13caad25ff0607c52a53591d1545be28561bd3f0de07 1631104 vsearch_2.15.2-3.debian.tar.xz Files: 04abc1565ed11c73b2be35a3a37e46ae 242701 vsearch_2.15.2.orig.tar.gz a2d8591432da89178500ac6416f88ea5 1631104 vsearch_2.15.2-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAmAnbsUACgkQr8/sjmac 4cIUZBAAke7g/bFgcxqLmuxURoe8jz4MyHE4frYVk34Ck+V1Y5KFBO3oKkbNlECo GbXeirCfb9svP9irAs7UHRksPK8SR/Bdj/6yTgAUAOLUUhOIo6ygDhcAXuu68THU wY7mJ4bD8iky1I2MPM/F01goQvC/6I2yQJxtMGm0bkA8IXlHsN3HsrU6JgrJmJfc CEemEQvx5vr6DaOR+t/i3sbFTh0toz+J+OzUAR1WwayB6RP3fo8soBmF4t669Pqm m60rFVnSrI25ve8purHXdy+l+NuBv6hkDheiqnMeJb2uVsxz/bUXcJs+jzmOPlJ5 5Socc++6juK9t6OMoHrDtmedzphkcP/rnMZCwduvi0+1cKP9VONXvaW8F5+xVJyc tEVrceVDxf68ya0p2PFTu8SgPu95oKh08uA7g/9BS/yyGIK2y4b0BwvwiEc9nAns LuszAJydvn7c+xQPOyIiPkz8oqHNg2MaDNY+BYURslv5xERq4POazZBngj9hXQk4 bY/7ZgLQNIsJYQI5SbcGySS89VeT0jeRg7SH92FY/9zMzqeqjPhonD60TNa1aeRn oZOsg+njWxY+iwdlsA2H+rMN0cvibocoA2o2heYsg7NyiOnp0bJPtPcM76Bfs8yy YtvefkuTNKINpH6z1Z+FNTL6dhP/39EZwMLoOb/Jiyknotv7X/Y= =+web -----END PGP SIGNATURE----- Fri Jan 21 02:30:16 UTC 2022 I: Checking whether the package is not for us Fri Jan 21 02:30:16 UTC 2022 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Jan 21 02:30:16 UTC 2022 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Jan 21 02:31:33 UTC 2022 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 20 14:30:17 -12 2022 I: pbuilder-time-stamp: 1642732217 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [vsearch_2.15.2-3.dsc] I: copying [./vsearch_2.15.2.orig.tar.gz] I: copying [./vsearch_2.15.2-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.0YAhOOZi/trustedkeys.kbx': General error gpgv: Signature made Fri Feb 12 18:16:37 2021 -12 gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./vsearch_2.15.2-3.dsc dpkg-source: info: extracting vsearch in vsearch-2.15.2 dpkg-source: info: unpacking vsearch_2.15.2.orig.tar.gz dpkg-source: info: unpacking vsearch_2.15.2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sysconf_memory_sizing.patch dpkg-source: info: applying compilerflags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/386647/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='18c40a13fc374f158ec2e43d16dc6a7f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='386647' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.xyoWXTbjPA/pbuilderrc_2xlA --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.xyoWXTbjPA/b1 --logfile b1/build.log vsearch_2.15.2-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-11-amd64 #1 SMP Debian 5.10.92-1 (2022-01-18) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 21:25 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/386647/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, markdown, ghostscript, time dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on markdown; however: Package markdown is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on time; however: Package time is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbz2-dev{a} libcups2{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgs9{a} libgs9-common{a} libicu67{a} libidn11{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpaper1{a} libpipeline1{a} libpng16-16{a} libsigsegv2{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libxml2{a} m4{a} man-db{a} markdown{a} po-debconf{a} poppler-data{a} sensible-utils{a} time{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl dbus fonts-droid-fallback libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 33.6 MB of archives. After unpacking 123 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 poppler-data all 0.4.10-1 [1602 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libgs9-common all 9.53.3~dfsg-7+deb11u1 [734 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5 [124 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5 [58.4 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.20-2 [219 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5 [62.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u1 [350 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libidn11 amd64 1.33-3 [116 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libjbig2dec0 amd64 0.19-2 [67.2 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libopenjp2-7 amd64 2.4.0-3 [172 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1 [289 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libgs9 amd64 9.53.3~dfsg-7+deb11u1 [2248 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 ghostscript amd64 9.53.3~dfsg-7+deb11u1 [97.9 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libbz2-dev amd64 1.0.8-4 [30.1 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 markdown all 1.0.1-10.1 [17.5 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 time amd64 1.9-0.1 [50.8 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Fetched 33.6 MB in 1s (63.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. 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Setting up libexpat1:amd64 (2.2.10-2) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up time (1.9-0.1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libijs-0.35:amd64 (0.35-15) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up poppler-data (0.4.10-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libjbig2dec0:amd64 (0.19-2) ... 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Setting up ghostscript (9.53.3~dfsg-7+deb11u1) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/vsearch-2.15.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vsearch_2.15.2-3_source.changes dpkg-buildpackage: info: source package vsearch dpkg-buildpackage: info: source version 2.15.2-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/vsearch-2.15.2' dh_clean rm -rf data/simm if [ -d test ] ; then find test -mindepth 1 -not -name '*.sh' -delete ; fi rm -f README.html data/README.html rm -f *.out make[1]: Leaving directory '/build/vsearch-2.15.2' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:85: installing './compile' configure.ac:6: installing './config.guess' configure.ac:6: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for ranlib... ranlib checking for pthread_create in -lpthread... yes checking for dlopen in -ldl... yes checking for GetProcessMemoryInfo in -lpsapi... no checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working strtod... yes checking for working alloca.h... yes checking for alloca... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for memmove... yes checking for memcpy... yes checking for posix_memalign... yes checking for gettimeofday... yes checking for localtime... yes checking for memchr... yes checking for memset... yes checking for pow... yes checking for regcomp... yes checking for strcasecmp... yes checking for strchr... yes checking for strcspn... yes checking for sysinfo... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for ps2pdf... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands debian/rules override_dh_auto_build make[1]: Entering directory '/build/vsearch-2.15.2' dh_auto_build make -j15 make[2]: Entering directory '/build/vsearch-2.15.2' make all-recursive make[3]: Entering directory '/build/vsearch-2.15.2' Making all in src make[4]: Entering directory '/build/vsearch-2.15.2/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o align.o align.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o align_simd.o align_simd.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o allpairs.o allpairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o arch.o arch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o attributes.o attributes.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o bitmap.o bitmap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o chimera.o chimera.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o cluster.o cluster.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o cut.o cut.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o db.o db.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o dbhash.o dbhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o dbindex.o dbindex.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o derep.o derep.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o dynlibs.o dynlibs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o eestats.o eestats.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fasta.o fasta.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastq.o fastq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastqjoin.o fastqjoin.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastqops.o fastqops.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastx.o fastx.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o filter.o filter.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o getseq.o getseq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o kmerhash.o kmerhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o linmemalign.o linmemalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o maps.o maps.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o mask.o mask.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -c -o md5.o md5.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o mergepairs.o mergepairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o minheap.o minheap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o msa.o msa.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o otutable.o otutable.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o rerep.o rerep.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o results.o results.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o search.o search.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o searchcore.o searchcore.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o searchexact.o searchexact.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sffconvert.o sffconvert.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sha1.o sha1.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o showalign.o showalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o shuffle.o shuffle.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sintax.o sintax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sortbylength.o sortbylength.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sortbysize.o sortbysize.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o subsample.o subsample.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o udb.o udb.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o unique.o unique.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o userfields.o userfields.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o util.o util.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o vsearch.o vsearch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -Wno-sign-compare -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o libcityhash_a-city.o `test -f 'city.cc' || echo './'`city.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -mssse3 -DSSSE3 -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o libcpu_ssse3_a-cpu.o `test -f 'cpu.cc' || echo './'`cpu.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -msse2 -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o libcpu_sse2_a-cpu.o `test -f 'cpu.cc' || echo './'`cpu.cc rm -f libcityhash.a ar cru libcityhash.a libcityhash_a-city.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcityhash.a rm -f libcpu_ssse3.a ar cru libcpu_ssse3.a libcpu_ssse3_a-cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu_ssse3.a rm -f libcpu_sse2.a ar cru libcpu_sse2.a libcpu_sse2_a-cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu_sse2.a g++ -Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -Wl,-z,relro -Wl,-z,now -flto -o ../bin/vsearch align.o align_simd.o allpairs.o arch.o attributes.o bitmap.o chimera.o cluster.o cut.o db.o dbhash.o dbindex.o derep.o dynlibs.o eestats.o fasta.o fastq.o fastqjoin.o fastqops.o fastx.o filter.o getseq.o kmerhash.o linmemalign.o maps.o mask.o md5.o mergepairs.o minheap.o msa.o otutable.o rerep.o results.o search.o searchcore.o searchexact.o sffconvert.o sha1.o showalign.o shuffle.o sintax.o sortbylength.o sortbysize.o subsample.o udb.o unique.o userfields.o util.o vsearch.o libcityhash.a libcpu_ssse3.a libcpu_sse2.a -ldl -lpthread make[4]: Leaving directory '/build/vsearch-2.15.2/src' Making all in man make[4]: Entering directory '/build/vsearch-2.15.2/man' sed -e 's/\\-/-/g' vsearch.1 | \ if [ $(uname) == "Darwin" ] ; then \ iconv -f UTF-8 -t ISO-8859-1 ; \ else \ cat ; \ fi | \ groff -W space -t -m mandoc -T ps -P -pa4 | ps2pdf - vsearch_manual.pdf make[4]: Leaving directory '/build/vsearch-2.15.2/man' make[4]: Entering directory '/build/vsearch-2.15.2' make[4]: Leaving directory '/build/vsearch-2.15.2' make[3]: Leaving directory '/build/vsearch-2.15.2' make[2]: Leaving directory '/build/vsearch-2.15.2' markdown README.md > README.html # Remove redundant travis-build URL sed -i 1d README.html make[1]: Leaving directory '/build/vsearch-2.15.2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/vsearch-2.15.2' if [ -d /usr/share/vsearch/data ] ; then \ mkdir -p ../vsearch-data && \ for datadir in `find /usr/share/vsearch/data -type d | sed -e "s#/usr/share/vsearch/data/*##" -e "/^$/d"` ; do mkdir -p ../vsearch-data/${datadir} ; done && \ for datafile in `find /usr/share/vsearch/data -type f` ; do \ ln -s ${datafile} `echo ${datafile} | sed -e "s#/usr/share/vsearch/data/#../vsearch-data/#"` ; \ done && \ zcat ../vsearch-data/BioMarKs.fsa.gz > ../vsearch-data/BioMarKs.fsa && \ cd test && \ for t in *.sh ; do \ bash $t v ; \ done && \ cd .. && \ rm -rf ../vsearch-data ; \ fi make[1]: Leaving directory '/build/vsearch-2.15.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j15 install DESTDIR=/build/vsearch-2.15.2/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/vsearch-2.15.2' Making install in src make[2]: Entering directory '/build/vsearch-2.15.2/src' make[3]: Entering directory '/build/vsearch-2.15.2/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/vsearch-2.15.2/debian/tmp/usr/bin' /usr/bin/install -c ../bin/vsearch '/build/vsearch-2.15.2/debian/tmp/usr/bin' make[3]: Leaving directory '/build/vsearch-2.15.2/src' make[2]: Leaving directory '/build/vsearch-2.15.2/src' Making install in man make[2]: Entering directory '/build/vsearch-2.15.2/man' make[3]: Entering directory '/build/vsearch-2.15.2/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/vsearch-2.15.2/debian/tmp/usr/share/doc/vsearch' /bin/mkdir -p '/build/vsearch-2.15.2/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 vsearch_manual.pdf '/build/vsearch-2.15.2/debian/tmp/usr/share/doc/vsearch' /usr/bin/install -c -m 644 vsearch.1 '/build/vsearch-2.15.2/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/build/vsearch-2.15.2/man' make[2]: Leaving directory '/build/vsearch-2.15.2/man' make[2]: Entering directory '/build/vsearch-2.15.2' make[3]: Entering directory '/build/vsearch-2.15.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/vsearch-2.15.2' make[2]: Leaving directory '/build/vsearch-2.15.2' make[1]: Leaving directory '/build/vsearch-2.15.2' debian/rules override_dh_install make[1]: Entering directory '/build/vsearch-2.15.2' dh_install if [ -d test ] ; then \ # tweak path tp vsearch binary in test scripts \ mkdir -p /build/vsearch-2.15.2/debian/vsearch/usr/share/doc/vsearch/test ; \ for tst in test/*.sh ; do sed 's?\.\./bin/vsearch?/usr/bin/vsearch?' ${tst} > /build/vsearch-2.15.2/debian/vsearch/usr/share/doc/vsearch/${tst} ; done ; \ fi make[1]: Leaving directory '/build/vsearch-2.15.2' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package vsearch-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'vsearch' in '../vsearch_2.15.2-3_amd64.deb'. dpkg-deb: building package 'vsearch-dbgsym' in '../vsearch-dbgsym_2.15.2-3_amd64.deb'. dpkg-deb: building package 'vsearch-examples' in '../vsearch-examples_2.15.2-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../vsearch_2.15.2-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/386647 and its subdirectories I: Current time: Thu Jan 20 14:31:33 -12 2022 I: pbuilder-time-stamp: 1642732293 Fri Jan 21 02:31:33 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri Jan 21 02:31:33 UTC 2022 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri Jan 21 02:32:54 UTC 2022 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri Jan 21 02:32:54 UTC 2022 I: vsearch_2.15.2-3_amd64.changes: Format: 1.8 Date: Fri, 12 Feb 2021 22:45:40 +0100 Source: vsearch Binary: vsearch vsearch-dbgsym vsearch-examples Architecture: amd64 Version: 2.15.2-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: vsearch - tool for processing metagenomic sequences vsearch-examples - Test Data for vsearch tool for processing metagenomic sequences Changes: vsearch (2.15.2-3) unstable; urgency=medium . * Team upload. * Add Architecture arm64; allows reverse dependencies to migrate on arm64. Checksums-Sha1: de7552d71e9bfe82051bb0137e4e0778fc646a4e 547276 vsearch-dbgsym_2.15.2-3_amd64.deb eec0185c295a1219e4e54c28c51691a30a9f91ca 3479856 vsearch-examples_2.15.2-3_amd64.deb c7f75c6199103a533478af888225dbe1e1ba2823 6395 vsearch_2.15.2-3_amd64.buildinfo 963c0c04c2cce5b604e1c3a6078331432ffd430a 350648 vsearch_2.15.2-3_amd64.deb Checksums-Sha256: 5d78e9bd38e09c7f48a28ec33455890377f70de5665a74931dd2662fb1f8bd4b 547276 vsearch-dbgsym_2.15.2-3_amd64.deb 1d057247d6ef1b0f3cb1c10b105c738f4495a9e050b37e33b678088308436e69 3479856 vsearch-examples_2.15.2-3_amd64.deb 926931923abb143c5ff31ee4b56b757c812f2254f1145bf5a411cb29d6b83ddb 6395 vsearch_2.15.2-3_amd64.buildinfo 4e736bbd5e31a5bf82e40d9ad193d4524c95a63987665398271b18d1df231db9 350648 vsearch_2.15.2-3_amd64.deb Files: c6548ba14634a51bfe8073100a5b5e3c 547276 debug optional vsearch-dbgsym_2.15.2-3_amd64.deb cda0bb7cc3e308298fe11b803b5ff622 3479856 science optional vsearch-examples_2.15.2-3_amd64.deb 601fa8e381bee7cae13f3ea209713af0 6395 science optional vsearch_2.15.2-3_amd64.buildinfo e064f22a6af35af7ae59d72bedf96f5e 350648 science optional vsearch_2.15.2-3_amd64.deb Fri Jan 21 02:32:55 UTC 2022 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.xyoWXTbjPA/vsearch_2.15.2-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.xyoWXTbjPA/vsearch_2.15.2-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.xyoWXTbjPA/vsearch_2.15.2-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.xyoWXTbjPA/b1/vsearch_2.15.2-3_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.xyoWXTbjPA/b2/vsearch_2.15.2-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.300s) 0.300s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.071s) 0.071s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jan 21 02:32:56 UTC 2022 I: found no differences in the changes files, and a .buildinfo file also exists. Fri Jan 21 02:32:56 UTC 2022 I: vsearch from bullseye built successfully and reproducibly on amd64. Fri Jan 21 02:32:57 UTC 2022 I: Submitting .buildinfo files to external archives: Fri Jan 21 02:32:57 UTC 2022 I: Submitting 8.0K b1/vsearch_2.15.2-3_amd64.buildinfo.asc Fri Jan 21 02:32:58 UTC 2022 I: Submitting 8.0K b2/vsearch_2.15.2-3_amd64.buildinfo.asc Fri Jan 21 02:32:59 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jan 21 02:32:59 UTC 2022 I: Done submitting .buildinfo files. Fri Jan 21 02:32:59 UTC 2022 I: Removing signed vsearch_2.15.2-3_amd64.buildinfo.asc files: removed './b1/vsearch_2.15.2-3_amd64.buildinfo.asc' removed './b2/vsearch_2.15.2-3_amd64.buildinfo.asc'