Sat Jul 29 00:50:30 UTC 2023 I: starting to build ragout/bullseye/amd64 on jenkins on '2023-07-29 00:50' Sat Jul 29 00:50:30 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_25/4794/console.log Sat Jul 29 00:50:30 UTC 2023 I: Downloading source for bullseye/ragout=2.3-2 --2023-07-29 00:50:30-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/ragout/ragout_2.3-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2100 (2.1K) [text/prs.lines.tag] Saving to: ‘ragout_2.3-2.dsc’ 0K .. 100% 161M=0s 2023-07-29 00:50:30 (161 MB/s) - ‘ragout_2.3-2.dsc’ saved [2100/2100] Sat Jul 29 00:50:31 UTC 2023 I: ragout_2.3-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ragout Binary: ragout, ragout-examples Architecture: any all Version: 2.3-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/fenderglass/Ragout/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/ragout Vcs-Git: https://salsa.debian.org/med-team/ragout.git Testsuite: autopkgtest Testsuite-Triggers: sibelia Build-Depends: debhelper-compat (= 12), dh-python, python3-dev, python3-networkx (>= 2.2), python3-setuptools Package-List: ragout deb science optional arch=any ragout-examples deb science optional arch=all Checksums-Sha1: 84bd0042b8e6241c57e2d86e31ff3c8bd2e83dae 12259072 ragout_2.3.orig.tar.xz 7bafddd5b167b6e5e4872dae59854373ba94b76d 6824 ragout_2.3-2.debian.tar.xz Checksums-Sha256: 135d2dead97f0488b37d1ce399e84753390f61d24f7ea9513d228c802a678a1b 12259072 ragout_2.3.orig.tar.xz 0a05317a03f5e0b0282612243e3b2b97e42f57b5d31dbccb176eb690c52ec92c 6824 ragout_2.3-2.debian.tar.xz Files: 32067eee402ee675a30f43bb14fe6cf7 12259072 ragout_2.3.orig.tar.xz 7ed517784fcbe7a870cb583793ae19d3 6824 ragout_2.3-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl5/xrURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG28g/+MnyhZOEEjsZ3YJeqjDpQ/1G5Rjy+PyLm w5jjArn6L9pQB2ZKAHCw+LiUK6KwqtROIU8CR4Q611rTyra0qQrasAheWrWvjJ4i bHHnD/hBX6bSZNem8Ow2rcUQy0P8MDy6z4JHNdlk4vk9jTIP90wqrw+HE8AhuBOs iQxjMKUPSrIBL0l44oBvHpC4+IEv0EkoFdEbN6VveJiy+D8qURuoFTr4Qr8qp9jn SXTZTmx1AB7nC6eZBvJQAe+BfhRGVc4Ay1vtE092JqX6//ooCqF6VUGUMN0jAFFf kF3SoYCr0r1n/48jT4srqTvOEd7CwqiVNjrlGrV0HEGLTMviiol9Gweu0u9PLJM6 O4Rwd9QAK7OqNi1xb/9MqRy1AWwDqIhI69u7wtlB4KEZ3jC7wOqvrCM90RsD23SB N/4giHigdIewFTKfyaNK8y1WfUwi0AvglXpGT1yv4VFBSdITvKf7OSS9d4WFj2SY falY1TOPFWznNhsEWSjNVzqUY8hAgp0I/AOoWw4e5c39IYaCbKVn5P1+aogSMAPn LPR6Krf/tdEbzjvnYQMjDKItXTeBRXYqT7C7ovl/m/Mj8ET9jQpE1GeC4UcuYTKV ZK58Gx4B45pmu3m/0ADnmzIDpJMZc1ZBEGkUr2xBFbNbdS4h82WGFFWC4bpRdmXv XfmaotNWdxk= =iSVF -----END PGP SIGNATURE----- Sat Jul 29 00:50:31 UTC 2023 I: Checking whether the package is not for us Sat Jul 29 00:50:31 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sat Jul 29 00:50:31 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sat Jul 29 00:54:38 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 28 12:50:33 -12 2023 I: pbuilder-time-stamp: 1690591833 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ragout_2.3-2.dsc] I: copying [./ragout_2.3.orig.tar.xz] I: copying [./ragout_2.3-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.G76UoNYk/trustedkeys.kbx': General error gpgv: Signature made Sat Mar 28 09:50:45 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ragout_2.3-2.dsc dpkg-source: info: extracting ragout in ragout-2.3 dpkg-source: info: unpacking ragout_2.3.orig.tar.xz dpkg-source: info: unpacking ragout_2.3-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying connected_component_subgraphs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3689672/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='ba19ec97c4b0486d9c634741b57a7a69' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3689672' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.js0L5VYY/pbuilderrc_MHiH --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.js0L5VYY/b1 --logfile b1/build.log ragout_2.3-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-1 (2023-07-14) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 20 2022 more -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3689672/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, python3-dev, python3-networkx (>= 2.2), python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx (>= 2.2); however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-networkx{a} python3-pkg-resources{a} python3-setuptools{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-gdal python3-matplotlib python3-numpy python3-pydot python3-pygraphviz python3-scipy python3-yaml wget 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 32.7 MB of archives. After unpacking 127 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 python3-networkx all 2.5+ds-2 [900 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 32.7 MB in 1s (57.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. 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Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:amd64 (3.9.2-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/ragout-2.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ragout_2.3-2_source.changes dpkg-buildpackage: info: source package ragout dpkg-buildpackage: info: source version 2.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/ragout-2.3' dh_auto_clean || true I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/ragout-2.3/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -f bin/ragout-maf2synteny bin/ragout-overlap rm -rf .pybuild find . -name "*.o" -delete make[1]: Leaving directory '/build/ragout-2.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout copying ragout/six.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout copying ragout/main.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout copying ragout/__version__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout copying ragout/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/assembly_graph copying ragout/assembly_graph/assembly_refine.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/assembly_graph copying ragout/assembly_graph/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/assembly_graph creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/inferer.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/breakpoint_graph.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/repeat_resolver.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/permutation.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/chimera_detector.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/maf2synteny copying ragout/maf2synteny/maf2synteny.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/maf2synteny copying ragout/maf2synteny/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/maf2synteny creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/overlap copying ragout/overlap/overlap.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/overlap copying ragout/overlap/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/overlap creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/parsers copying ragout/parsers/recipe_parser.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/parsers copying ragout/parsers/phylogeny_parser.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/parsers copying ragout/parsers/fasta_parser.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/parsers copying ragout/parsers/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/parsers creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/phylogeny copying ragout/phylogeny/phylogeny.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/phylogeny copying ragout/phylogeny/inferer.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/phylogeny copying ragout/phylogeny/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/phylogeny creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/scaffolder copying ragout/scaffolder/merge_iters.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/scaffolder copying ragout/scaffolder/scaffolder.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/scaffolder copying ragout/scaffolder/output_generator.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/scaffolder copying ragout/scaffolder/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/scaffolder creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared copying ragout/shared/utils.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared copying ragout/shared/debug.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared copying ragout/shared/datatypes.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared copying ragout/shared/config.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared copying ragout/shared/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend copying ragout/synteny_backend/synteny_backend.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend copying ragout/synteny_backend/sibelia.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend copying ragout/synteny_backend/maf.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend copying ragout/synteny_backend/hal.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend copying ragout/synteny_backend/cactus.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend copying ragout/synteny_backend/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick copying ragout/newick/tree.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick copying ragout/newick/tokens.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick copying ragout/newick/parser.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick copying ragout/newick/lexer.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick copying ragout/newick/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests copying ragout/tests/test_toy.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests copying ragout/tests/__init__.py -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests creating /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/data copying ragout/tests/data/mg1655_contigs.fasta -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/data copying ragout/tests/data/mg1655.coords -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/data copying ragout/tests/data/ecoli.rcp -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/data copying ragout/tests/data/DH1.fasta -> /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/data make[1]: Entering directory '/build/ragout-2.3' make -C ragout/overlap/cpp_impl all make[2]: Entering directory '/build/ragout-2.3/ragout/overlap/cpp_impl' g++ -c -g -O2 -fdebug-prefix-map=/build/ragout-2.3=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++0x -Wall -O2 -DNDEBUG build_graph.cpp -o build_graph.o g++ -c -g -O2 -fdebug-prefix-map=/build/ragout-2.3=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++0x -Wall -O2 -DNDEBUG fasta.cpp -o fasta.o g++ -c -g -O2 -fdebug-prefix-map=/build/ragout-2.3=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++0x -Wall -O2 -DNDEBUG main.cpp -o main.o g++ -c -g -O2 -fdebug-prefix-map=/build/ragout-2.3=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++0x -Wall -O2 -DNDEBUG overlap.cpp -o overlap.o g++ -c -g -O2 -fdebug-prefix-map=/build/ragout-2.3=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++0x -Wall -O2 -DNDEBUG suffix_array.cpp -o suffix_array.o g++ -Wl,-z,relro -Wl,-z,now build_graph.o fasta.o main.o overlap.o suffix_array.o -o /build/ragout-2.3/bin/ragout-overlap make[2]: Leaving directory '/build/ragout-2.3/ragout/overlap/cpp_impl' make -C ragout/maf2synteny/cpp_impl all make[2]: Entering directory '/build/ragout-2.3/ragout/maf2synteny/cpp_impl' g++ -c -g -O2 -fdebug-prefix-map=/build/ragout-2.3=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++0x -Wall -O2 -DNDEBUG breakpoint_graph.cpp -o breakpoint_graph.o g++ -c -g -O2 -fdebug-prefix-map=/build/ragout-2.3=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++0x -Wall -O2 -DNDEBUG compress_algorithms.cpp -o compress_algorithms.o g++ -c -g -O2 -fdebug-prefix-map=/build/ragout-2.3=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++0x -Wall -O2 -DNDEBUG maf_tools.cpp -o maf_tools.o g++ -c -g -O2 -fdebug-prefix-map=/build/ragout-2.3=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++0x -Wall -O2 -DNDEBUG main.cpp -o main.o g++ -c -g -O2 -fdebug-prefix-map=/build/ragout-2.3=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++0x -Wall -O2 -DNDEBUG permutation.cpp -o permutation.o g++ -Wl,-z,relro -Wl,-z,now breakpoint_graph.o compress_algorithms.o maf_tools.o main.o permutation.o -o /build/ragout-2.3/bin/ragout-maf2synteny make[2]: Leaving directory '/build/ragout-2.3/ragout/maf2synteny/cpp_impl' make[1]: Leaving directory '/build/ragout-2.3' dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/ragout-2.3/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/ragout-2.3/debian/tmp running install running build running build_py make[1]: Entering directory '/build/ragout-2.3' make -C ragout/overlap/cpp_impl all make[2]: Entering directory '/build/ragout-2.3/ragout/overlap/cpp_impl' g++ -Wl,-z,relro -Wl,-z,now build_graph.o fasta.o main.o overlap.o suffix_array.o -o /build/ragout-2.3/bin/ragout-overlap make[2]: Leaving directory '/build/ragout-2.3/ragout/overlap/cpp_impl' make -C ragout/maf2synteny/cpp_impl all make[2]: Entering directory '/build/ragout-2.3/ragout/maf2synteny/cpp_impl' g++ -Wl,-z,relro -Wl,-z,now breakpoint_graph.o compress_algorithms.o maf_tools.o main.o permutation.o -o /build/ragout-2.3/bin/ragout-maf2synteny make[2]: Leaving directory '/build/ragout-2.3/ragout/maf2synteny/cpp_impl' make[1]: Leaving directory '/build/ragout-2.3' running install_lib creating /build/ragout-2.3/debian/tmp/usr creating /build/ragout-2.3/debian/tmp/usr/lib creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9 creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/__pycache__ creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/__pycache__/test_toy.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests/__pycache__ creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests/data copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/data/DH1.fasta -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests/data copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/data/ecoli.rcp -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests/data copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/data/mg1655.coords -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests/data copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/data/mg1655_contigs.fasta -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests/data copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/tests/test_toy.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick/lexer.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick/parser.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick/tokens.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/newick/tree.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend/cactus.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend/hal.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend/maf.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend/sibelia.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/synteny_backend/synteny_backend.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared/config.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared/datatypes.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared/debug.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/shared/utils.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/scaffolder/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/scaffolder/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/scaffolder/output_generator.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/scaffolder/scaffolder.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/scaffolder/merge_iters.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/phylogeny creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/phylogeny/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/phylogeny/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/phylogeny/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/phylogeny/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/phylogeny copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/phylogeny/inferer.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/phylogeny copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/phylogeny/phylogeny.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/phylogeny creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/parsers/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/parsers/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/parsers/fasta_parser.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/parsers/phylogeny_parser.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/parsers/recipe_parser.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/overlap creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/overlap/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/overlap/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/overlap/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/overlap/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/overlap copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/overlap/overlap.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/overlap creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/maf2synteny creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/maf2synteny/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/maf2synteny/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/maf2synteny/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/maf2synteny/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/maf2synteny copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/maf2synteny/maf2synteny.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/maf2synteny creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph/chimera_detector.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph/permutation.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph/repeat_resolver.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph/breakpoint_graph.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/breakpoint_graph/inferer.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/assembly_graph creating /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/assembly_graph/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/assembly_graph/__pycache__/__init__.cpython-39.pyc -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/assembly_graph/__pycache__ copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/assembly_graph/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/assembly_graph copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/assembly_graph/assembly_refine.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/assembly_graph copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/__init__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/__version__.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/main.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout copying /build/ragout-2.3/.pybuild/cpython3_3.9/build/ragout/six.py -> /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/tests/test_toy.py to test_toy.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick/lexer.py to lexer.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick/parser.py to parser.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick/tokens.py to tokens.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/newick/tree.py to tree.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend/cactus.py to cactus.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend/hal.py to hal.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend/maf.py to maf.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend/sibelia.py to sibelia.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/synteny_backend/synteny_backend.py to synteny_backend.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared/config.py to config.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared/datatypes.py to datatypes.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared/debug.py to debug.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/shared/utils.py to utils.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder/output_generator.py to output_generator.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder/scaffolder.py to scaffolder.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/scaffolder/merge_iters.py to merge_iters.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/phylogeny/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/phylogeny/inferer.py to inferer.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/phylogeny/phylogeny.py to phylogeny.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers/fasta_parser.py to fasta_parser.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers/phylogeny_parser.py to phylogeny_parser.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/parsers/recipe_parser.py to recipe_parser.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/overlap/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/overlap/overlap.py to overlap.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/maf2synteny/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/maf2synteny/maf2synteny.py to maf2synteny.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph/chimera_detector.py to chimera_detector.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph/permutation.py to permutation.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph/repeat_resolver.py to repeat_resolver.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph/breakpoint_graph.py to breakpoint_graph.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/breakpoint_graph/inferer.py to inferer.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/assembly_graph/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/assembly_graph/assembly_refine.py to assembly_refine.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/__version__.py to __version__.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/main.py to main.cpython-39.pyc byte-compiling /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout/six.py to six.cpython-39.pyc running install_egg_info running egg_info creating ragout.egg-info writing ragout.egg-info/PKG-INFO writing dependency_links to ragout.egg-info/dependency_links.txt writing entry points to ragout.egg-info/entry_points.txt writing top-level names to ragout.egg-info/top_level.txt writing manifest file 'ragout.egg-info/SOURCES.txt' reading manifest file 'ragout.egg-info/SOURCES.txt' writing manifest file 'ragout.egg-info/SOURCES.txt' Copying ragout.egg-info to /build/ragout-2.3/debian/tmp/usr/lib/python3.9/dist-packages/ragout-2.3.egg-info Skipping SOURCES.txt running install_scripts Installing ragout script to /build/ragout-2.3/debian/tmp/usr/bin Installing C++ binaries debian/rules override_dh_install make[1]: Entering directory '/build/ragout-2.3' dh_install find debian -name LICENSE -delete make[1]: Leaving directory '/build/ragout-2.3' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/ragout/usr/bin/ragout dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package ragout-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package ragout-examples: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'ragout-examples' in '../ragout-examples_2.3-2_all.deb'. dpkg-deb: building package 'ragout' in '../ragout_2.3-2_amd64.deb'. dpkg-deb: building package 'ragout-dbgsym' in '../ragout-dbgsym_2.3-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ragout_2.3-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3689672 and its subdirectories I: Current time: Fri Jul 28 12:54:37 -12 2023 I: pbuilder-time-stamp: 1690592077 Sat Jul 29 00:54:39 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sat Jul 29 00:54:39 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sat Jul 29 00:58:41 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sat Jul 29 00:58:42 UTC 2023 I: ragout_2.3-2_amd64.changes: Format: 1.8 Date: Sat, 28 Mar 2020 22:34:46 +0100 Source: ragout Binary: ragout ragout-dbgsym ragout-examples Architecture: amd64 all Version: 2.3-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ragout - Reference-Assisted Genome Ordering UTility ragout-examples - Reference-Assisted Genome Ordering UTility (example data) Closes: 953904 Changes: ragout (2.3-2) unstable; urgency=medium . * Sibelia is now available Closes: #953904 * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Fix "AttributeError: module 'networkx' has no attribute 'connected_component_subgraphs'" which became obvious in test suite * d/copyright: lib/ragout was moved to ragout/ragout * networkx code copy is not inluded into upstream source any more Checksums-Sha1: 0c09000de1c9be8363abbc1f27cbc51116bab81e 1301092 ragout-dbgsym_2.3-2_amd64.deb c9336e09d693b61b89600d7a65dcb7001bbeff08 18434144 ragout-examples_2.3-2_all.deb 78ce126e1e0e6b27abb9b8127ac9a9e2effb255e 6491 ragout_2.3-2_amd64.buildinfo c4a00355700f11dcd06bff73b54812ad3491ffbf 2125268 ragout_2.3-2_amd64.deb Checksums-Sha256: 865093d06d6078123929beb3650309ffde7ec4c6d49808ee852537df3d532de7 1301092 ragout-dbgsym_2.3-2_amd64.deb 149fefce4d2de8942e75db6c66c00d3f4395f38883994803a76586536b02eee9 18434144 ragout-examples_2.3-2_all.deb c8151de1aa9a8b64001c59826f5cbe1a2840312b2fda3b66e4e84b00ed75a49e 6491 ragout_2.3-2_amd64.buildinfo b607028293c0f89029458265964605de4a93d995ebdba43401d90839eb9185df 2125268 ragout_2.3-2_amd64.deb Files: 1380fcdfe4530ac4244528f4d91c0fda 1301092 debug optional ragout-dbgsym_2.3-2_amd64.deb 312303b6b1e92325ab4e846d2922206c 18434144 science optional ragout-examples_2.3-2_all.deb 00b9a956363f7e6561ad3d20e76d0a48 6491 science optional ragout_2.3-2_amd64.buildinfo bced8ce15b558f4cfb80b8d58b7eb760 2125268 science optional ragout_2.3-2_amd64.deb Sat Jul 29 00:58:43 UTC 2023 I: diffoscope 243 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.js0L5VYY/ragout_2.3-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.js0L5VYY/ragout_2.3-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.js0L5VYY/ragout_2.3-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.js0L5VYY/b1/ragout_2.3-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.js0L5VYY/b2/ragout_2.3-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.403s) 0.403s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.196s) 0.196s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sat Jul 29 00:58:44 UTC 2023 I: diffoscope 243 found no differences in the changes files, and a .buildinfo file also exists. Sat Jul 29 00:58:44 UTC 2023 I: ragout from bullseye built successfully and reproducibly on amd64. Sat Jul 29 00:58:46 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Jul 29 00:58:46 UTC 2023 I: Submitting 8.0K b1/ragout_2.3-2_amd64.buildinfo.asc Sat Jul 29 00:58:47 UTC 2023 I: Submitting 8.0K b2/ragout_2.3-2_amd64.buildinfo.asc Sat Jul 29 00:58:47 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jul 29 00:58:47 UTC 2023 I: Done submitting .buildinfo files. Sat Jul 29 00:58:47 UTC 2023 I: Removing signed ragout_2.3-2_amd64.buildinfo.asc files: removed './b1/ragout_2.3-2_amd64.buildinfo.asc' removed './b2/ragout_2.3-2_amd64.buildinfo.asc'