Sun Jul 30 21:58:36 UTC 2023 I: starting to build python-pairix/bullseye/amd64 on jenkins on '2023-07-30 21:58' Sun Jul 30 21:58:36 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_20/4864/console.log Sun Jul 30 21:58:36 UTC 2023 I: Downloading source for bullseye/python-pairix=0.3.7-3 --2023-07-30 21:58:36-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-pairix/python-pairix_0.3.7-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2228 (2.2K) [text/prs.lines.tag] Saving to: ‘python-pairix_0.3.7-3.dsc’ 0K .. 100% 179M=0s 2023-07-30 21:58:36 (179 MB/s) - ‘python-pairix_0.3.7-3.dsc’ saved [2228/2228] Sun Jul 30 21:58:36 UTC 2023 I: python-pairix_0.3.7-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-pairix Binary: python3-pairix, python-pairix-examples Architecture: any all Version: 0.3.7-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/4dn-dcic/pairix Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pairix Vcs-Git: https://salsa.debian.org/med-team/python-pairix.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, zlib1g-dev, python3-pytest Package-List: python-pairix-examples deb science optional arch=all python3-pairix deb python optional arch=any Checksums-Sha1: eb863fe1eeedbfdf4fc98a93b264c158c6870694 175413839 python-pairix_0.3.7.orig.tar.gz 141b972f9df263a562e5173471b0788248b32354 3292 python-pairix_0.3.7-3.debian.tar.xz Checksums-Sha256: c0de5fb5baea2bf90a6179f9c81c911e2fb951b716b38574f73ac5b23ac84969 175413839 python-pairix_0.3.7.orig.tar.gz 00cdd33ded03550ce2464a8883a1138d1cfd26db261e05e344daf00a83755b56 3292 python-pairix_0.3.7-3.debian.tar.xz Files: a1f9b3c7b13d904dfe736cf5e66c2385 175413839 python-pairix_0.3.7.orig.tar.gz 1d51aa002a8b353dd5c237627863c5b3 3292 python-pairix_0.3.7-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+pVSoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGRmQ/8DPm2LQs+2vlWkLTyk8CJuAQPRIIqtcee 6dyxBdejyyQ6yKa/0QrL0ILSrLqxTTnygJp3dg4UmZ6WlktrgNiFv3Q576wNPrBe DH308bJpy1HeQhx6tcy27B9FxZKJAuHejNWKlHLkPqQ6LuNjUSI1VjTjmlzAwE4n glt3ZfmEiLpXsQu9zXRun+GF7iYpCndZwxyEffUy2AP6M3wYeLNb2h8lPkflPztp topvTGXpK9y/FwYFg3enPyORbr5im1DI3QaGiIqOJsJM70nblcTl4OIf5a5OQH/j xi7ub+qODu5Ib4vyzoDFoF70xuC6l0ot8jpyrYHYdZ8NHE97+5+L8QheiRctSTd4 Q+1ruvAt/1Gp50EYJV4trjfoF57ZapQz95oPG/X8gaOzjBr5jAlOggJN9zV2I90E O6WrfYz9T+ttpNd8rhp/GykZGWbeMSHBnleXqEk2OU0M5t1vbWDosTbeGv/35yM1 OBfst0+NBWi19mQrNIhqeUHykVQ94e0UmsbhWzqDtl1iGPi0kuhOdA55cXOp6e0w CSi8lISkDnoup5E7/BO//SlWAOavK1d6HpfY8e8CMoRTSA9SEPGPpFBnBlDocFqi zJ7YbRMiG7/DoaSDhgEdW5v2wlPzO5EiF5bMFBF7Qr3N0wExo/eoczz+ldLno4kW qcQL+L6kq5I= =PC2u -----END PGP SIGNATURE----- Sun Jul 30 21:58:36 UTC 2023 I: Checking whether the package is not for us Sun Jul 30 21:58:36 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sun Jul 30 21:58:36 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sun Jul 30 22:03:10 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Aug 31 16:21:45 -12 2024 I: pbuilder-time-stamp: 1725164505 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pairix_0.3.7-3.dsc] I: copying [./python-pairix_0.3.7.orig.tar.gz] I: copying [./python-pairix_0.3.7-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.vLzHLFvE/trustedkeys.kbx': General error gpgv: Signature made Mon Nov 9 02:41:46 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pairix_0.3.7-3.dsc dpkg-source: info: extracting python-pairix in python-pairix-0.3.7 dpkg-source: info: unpacking python-pairix_0.3.7.orig.tar.gz dpkg-source: info: unpacking python-pairix_0.3.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2558736/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2abe2cc7efe14ec5979e33f3286af269' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2558736' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EOB06qKd/pbuilderrc_bWAx --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EOB06qKd/b1 --logfile b1/build.log python-pairix_0.3.7-3.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-2 (2023-07-27) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 20 2022 more -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 8 03:47 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2558736/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, zlib1g-dev, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-setuptools{a} python3-six{a} python3-toml{a} python3-zipp{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 32.4 MB of archives. After unpacking 125 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libpython3-all-dev amd64 3.9.2-3 [1068 B] Get: 55 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 56 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 python3-all-dev amd64 3.9.2-3 [1064 B] Get: 60 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get: 64 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get: 66 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 python3-toml all 0.10.1-1 [15.9 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 python3-pytest all 6.0.2-2 [211 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 32.4 MB in 1s (57.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. 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Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20995 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... 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Unpacking python3-setuptools (52.0.0-4) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (20.9-2) ... Setting up libpython3-all-dev:amd64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-all-dev (3.9.2-3) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-pairix-0.3.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pairix_0.3.7-3_source.changes dpkg-buildpackage: info: source package python-pairix dpkg-buildpackage: info: source version 0.3.7-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_ext building 'pypairix' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.9 -c src/bgzf.c -o build/temp.linux-x86_64-3.9/src/bgzf.o src/bgzf.c: In function 'bgzf_block_length': src/bgzf.c:331:27: warning: unused variable 'remaining' [-Wunused-variable] 331 | int count, block_length, remaining; | ^~~~~~~~~ src/bgzf.c:330:40: warning: unused variable 'compressed_block' [-Wunused-variable] 330 | uint8_t header[BLOCK_HEADER_LENGTH], *compressed_block; | ^~~~~~~~~~~~~~~~ src/bgzf.c: In function 'bgzf_flush': src/bgzf.c:419:61: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 419 | if (fwrite(fp->compressed_block, 1, block_length, fp->fp) != block_length) { | ^~ src/bgzf.c: In function 'bgzf_close': src/bgzf.c:456:11: warning: variable 'count' set but not used [-Wunused-but-set-variable] 456 | int ret, count, block_length; | ^~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.9 -c src/bgzip.c -o build/temp.linux-x86_64-3.9/src/bgzip.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.9 -c src/index.c -o build/temp.linux-x86_64-3.9/src/index.o src/index.c: In function 'merge_chunks': src/index.c:354:18: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 354 | for (l = 1; l < p->n; ++l) { | ^ src/index.c: In function 'ti_index_core': src/index.c:393:35: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int32_t' {aka 'int'} changes value from 'last_bin = 4294967295' to '-1' [-Woverflow] 393 | save_bin = save_tid = last_tid = last_bin = 0xffffffffu; | ^~~~~~~~ src/index.c:399:14: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int32_t' {aka 'int'} [-Wsign-compare] 399 | if (lineno <= idx->conf.line_skip || str->s[0] == idx->conf.meta_char) { | ^~ src/index.c:423:16: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 423 | if (intv.bin != last_bin) { // then possibly write the binning index | ^~ src/index.c:431:21: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] 431 | if (bgzf_tell(fp) <= last_off) { | ^~ src/index.c: In function 'ti_index_save': src/index.c:510:17: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'khint_t' {aka 'unsigned int'} [-Wsign-compare] 510 | for (i = 0; i < kh_size(idx->tname); ++i) | ^ src/index.c:514:17: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'khint_t' {aka 'unsigned int'} [-Wsign-compare] 514 | for (i = 0; i < kh_size(idx->tname); ++i) | ^ src/index.c:534:25: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 534 | for (x = 0; (int)x < p->n; ++x) { | ^ src/index.c:539:25: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 539 | for (x = 0; (int)x < p->n; ++x) { | ^ src/index.c: In function 'ti_index_load_core': src/index.c:659:19: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 659 | for (x = 0; x < p->n; ++x) { | ^ src/index.c: In function 'ti_parse_region2d': src/index.c:864:69: warning: passing argument 1 of 'ti_get_region_split_character' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 864 | char region_split_character = ti_get_region_split_character(idx); | ^~~ In file included from src/index.c:11: src/pairix.h:218:56: note: expected 'ti_index_t *' {aka 'struct __ti_index_t *'} but argument is of type 'const ti_index_t *' {aka 'const struct __ti_index_t *'} 218 | char ti_get_region_split_character(ti_index_t *idx); | ~~~~~~~~~~~~^~~ src/index.c:878:30: warning: passing argument 1 of 'ti_get_sc2' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 878 | int dim = ti_get_sc2(idx)+1==0?1:2; | ^~~ In file included from src/index.c:11: src/pairix.h:209:36: note: expected 'ti_index_t *' {aka 'struct __ti_index_t *'} but argument is of type 'const ti_index_t *' {aka 'const struct __ti_index_t *'} 209 | int ti_get_sc2(ti_index_t *idx); | ~~~~~~~~~~~~^~~ src/index.c: In function 'reg2bins': src/index.c:974:49: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 974 | for (k = 1 + (beg>>TAD_LIDX_SHIFT_PL12); k <= 1 + (end>>TAD_LIDX_SHIFT_PL12); ++k) list[i++] = k; | ^~ src/index.c:975:48: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 975 | for (k = 9 + (beg>>TAD_LIDX_SHIFT_PL9); k <= 9 + (end>>TAD_LIDX_SHIFT_PL9); ++k) list[i++] = k; | ^~ src/index.c:976:48: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 976 | for (k = 73 + (beg>>TAD_LIDX_SHIFT_PL6); k <= 73 + (end>>TAD_LIDX_SHIFT_PL6); ++k) list[i++] = k; | ^~ src/index.c:977:48: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 977 | for (k = 585 + (beg>>TAD_LIDX_SHIFT_PL3); k <= 585 + (end>>TAD_LIDX_SHIFT_PL3); ++k) list[i++] = k; | ^~ src/index.c:978:44: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 978 | for (k = 4681 + (beg>>TAD_LIDX_SHIFT); k <= 4681 + (end>>TAD_LIDX_SHIFT); ++k) list[i++] = k; | ^~ src/index.c: In function 'ti_iter_query': src/index.c:1038:18: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 1038 | for (j = 0; j < p->n; ++j) | ^ src/index.c: In function 'ti_querys_2d_general': src/index.c:1219:31: warning: initialization of 'char **' from incompatible pointer type 'const char **' [-Wincompatible-pointer-types] 1219 | char **chrpairlist = ti_seqname(t->idx, &n_seqpair_list); | ^~~~~~~~~~ src/index.c:1236:59: warning: passing argument 2 of 'ti_querys_2d_multi' from incompatible pointer type [-Wincompatible-pointer-types] 1236 | sequential_iter_t *siter = ti_querys_2d_multi(t, regions, n_sub_list); | ^~~~~~~ | | | char ** In file included from src/index.c:11: src/pairix.h:131:73: note: expected 'const char **' but argument is of type 'char **' 131 | sequential_iter_t *ti_querys_2d_multi(pairix_t *t, const char **regs, int nRegs); | ~~~~~~~~~~~~~^~~~ src/index.c:1242:30: warning: initialization discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1242 | *sp=0; char *chr1 = reg; | ^~~ src/index.c:1246:31: warning: initialization of 'char **' from incompatible pointer type 'const char **' [-Wincompatible-pointer-types] 1246 | char **chrpairlist = ti_seqname(t->idx, &n_seqpair_list); | ^~~~~~~~~~ src/index.c:1263:59: warning: passing argument 2 of 'ti_querys_2d_multi' from incompatible pointer type [-Wincompatible-pointer-types] 1263 | sequential_iter_t *siter = ti_querys_2d_multi(t, regions, n_sub_list); | ^~~~~~~ | | | char ** In file included from src/index.c:11: src/pairix.h:131:73: note: expected 'const char **' but argument is of type 'char **' 131 | sequential_iter_t *ti_querys_2d_multi(pairix_t *t, const char **regs, int nRegs); | ~~~~~~~~~~~~~^~~~ src/index.c: In function 'ti_query_2d_tid': src/index.c:1417:24: warning: returning 'ti_iter_t' {aka 'struct __ti_iter_t *'} from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] 1417 | if (name == 0) return ti_iter_first(); | ^~~~~~~~~~~~~~~ src/index.c: In function 'create_merged_iter': src/index.c:1469:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1469 | if( miter->iu = calloc(n,sizeof(iter_unit*))) { | ^~~~~ src/index.c: In function 'merged_ti_read': src/index.c:1537:19: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1537 | miu[i]->s = ti_iter_read(miu[i]->t->fp, miu[i]->iter, miu[i]->len, seqonly); | ^ src/index.c:1543:17: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1543 | miu[0]->s = ti_iter_read(miu[0]->t->fp, miu[0]->iter, miu[0]->len, seqonly); // get next entry for the flushed iter | ^ src/index.c: In function 'sequential_ti_read': src/index.c:1573:15: warning: initialization discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1573 | char *s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0); | ^~~~~~~~~~~~ src/index.c:1576:9: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1576 | s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0); | ^ src/index.c: In function 'get_unique_merged_seqname': src/index.c:1643:22: warning: assignment to 'char **' from incompatible pointer type 'const char **' [-Wincompatible-pointer-types] 1643 | seqnames = ti_seqname(tbs[i]->idx,&len); | ^ src/index.c: In function 'flip_region': src/index.c:1744:19: warning: variable 'split_pos' set but not used [-Wunused-but-set-variable] 1744 | int l, i, l2, split_pos; | ^~~~~~~~~ src/index.c: In function 'querys_2D_wrapper': src/index.c:1911:34: warning: passing argument 1 of 'flip_region' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1911 | char *reg2 = flip_region(reg, get_region_split_character(tb)); | ^~~ src/index.c:1743:27: note: expected 'char *' but argument is of type 'const char *' 1743 | char *flip_region ( char* s, char region_split_character) { | ~~~~~~^ src/index.c: In function 'check_triangle': src/index.c:1971:23: warning: initialization of 'char **' from incompatible pointer type 'const char **' [-Wincompatible-pointer-types] 1971 | char **seqnames = ti_seqname(idx,&len); | ^~~~~~~~~~ src/index.c:1977:64: warning: passing argument 1 of 'free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1977 | if(ti_get_tid(idx, reg2)!=-1) { free(seqnames); free(reg2); return(0); } // not a triangle | ^~~~ In file included from src/khash.h:94, from src/index.c:4: /usr/include/stdlib.h:565:25: note: expected 'void *' but argument is of type 'const char *' 565 | extern void free (void *__ptr) __THROW; | ~~~~~~^~~~~ src/index.c:1978:14: warning: passing argument 1 of 'free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1978 | free(reg2); | ^~~~ In file included from src/khash.h:94, from src/index.c:4: /usr/include/stdlib.h:565:25: note: expected 'void *' but argument is of type 'const char *' 565 | extern void free (void *__ptr) __THROW; | ~~~~~~^~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.9 -c src/knetfile.c -o build/temp.linux-x86_64-3.9/src/knetfile.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.9 -c src/kstring.c -o build/temp.linux-x86_64-3.9/src/kstring.o src/kstring.c: In function 'ksprintf': src/kstring.c:15:12: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 15 | if (l + 1 > s->m - s->l) { | ^ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.9 -c src/pairixmodule.c -o build/temp.linux-x86_64-3.9/src/pairixmodule.o src/pairixmodule.c: In function 'pairix_new': src/pairixmodule.c:367:9: warning: unused variable 'i' [-Wunused-variable] 367 | int i; | ^ src/pairixmodule.c: In function 'pairix_querys_2D': src/pairixmodule.c:559:28: warning: passing argument 1 of 'flip_region' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 559 | reg2 = flip_region(reg, get_region_split_character(self->tb)); | ^~~ In file included from src/pairixmodule.c:34: src/pairix.h:223:33: note: expected 'char *' but argument is of type 'const char *' 223 | char* flip_region(char *s, char region_split_character); | ~~~~~~^ src/pairixmodule.c: In function 'pairix_get_blocknames': src/pairixmodule.c:603:23: warning: initialization of 'char **' from incompatible pointer type 'const char **' [-Wincompatible-pointer-types] 603 | char **blocknames = ti_seqname(self->tb->idx, &n); | ^~~~~~~~~~ src/pairixmodule.c: In function 'pairix_get_header': src/pairixmodule.c:693:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 693 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ src/pairixmodule.c:704:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 704 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ src/pairixmodule.c: In function 'pairix_get_chromsize': src/pairixmodule.c:726:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 726 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ src/pairixmodule.c:738:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 738 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/src/bgzf.o build/temp.linux-x86_64-3.9/src/bgzip.o build/temp.linux-x86_64-3.9/src/index.o build/temp.linux-x86_64-3.9/src/knetfile.o build/temp.linux-x86_64-3.9/src/kstring.o build/temp.linux-x86_64-3.9/src/pairixmodule.o -lz -o /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/pypairix.cpython-39-x86_64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:284: cp -a /build/python-pairix-0.3.7/samples /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build; cp -a /build/python-pairix-0.3.7/VERSION.txt /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build; I: pybuild base:232: cd /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build; python3.9 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/python-pairix-0.3.7 collected 48 items test/test_oldindex.py ........................ [ 50%] test/test_oldindex2.py ........................ [100%] =============================== warnings summary =============================== test/test_oldindex.py:58 /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/test/test_oldindex.py:58: DeprecationWarning: invalid escape sequence \s fields = line.rstrip().split('\s+') :58: 17 warnings :58: DeprecationWarning: invalid escape sequence \s test/test_oldindex2.py:57 /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/test/test_oldindex2.py:57: DeprecationWarning: invalid escape sequence \s fields = line.rstrip().split('\s+') :57: 17 warnings :57: DeprecationWarning: invalid escape sequence \s -- Docs: https://docs.pytest.org/en/stable/warnings.html ======================= 48 passed, 36 warnings in 24.88s ======================= The file is a triangle. The file is a triangle. The file is not a triangle. The file is a triangle. The file is a triangle. The file is not a triangle. create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-pairix-0.3.7/debian/python3-pairix running install running build running build_ext running install_lib creating /build/python-pairix-0.3.7/debian/python3-pairix creating /build/python-pairix-0.3.7/debian/python3-pairix/usr creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9 creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/VERSION.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_old_merged_nodups.txt.bsorted.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_old_merged_nodups.txt.bsorted.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_old_merged_nodups.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_old_merged_nodups.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_old_merged_nodups.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_old_merged_nodups.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_merged_nodups.txt.bsorted.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_merged_nodups.txt.bsorted.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_merged_nodups.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_merged_nodups.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_merged_nodups.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_merged_nodups.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_juicer_shortform.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_juicer_shortform.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_juicer_shortform.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_juicer_shortform.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_4dn_2.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_4dn_2.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_4dn.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_4dn.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test_4dn.cp.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test.regions2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test.regions -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/test.bed -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/test_4dn.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/test_4dn.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/mock.largechr.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/mock.largechr.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/merged_nodup.tab.chrblock_sorted.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index2 creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_old_merged_nodups.txt.bsorted.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_old_merged_nodups.txt.bsorted.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_old_merged_nodups.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_old_merged_nodups.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_old_merged_nodups.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_old_merged_nodups.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_merged_nodups.txt.bsorted.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_merged_nodups.txt.bsorted.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_merged_nodups.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_merged_nodups.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_merged_nodups.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_merged_nodups.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_juicer_shortform.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_juicer_shortform.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_juicer_shortform.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_juicer_shortform.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_4dn_2.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_4dn_2.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_4dn.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_4dn.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test_4dn.cp.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test.regions2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test.regions -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/test.bed -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/mock.largechr.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/mock.largechr.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample2.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample2.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/merged_nodup.tab.chrblock_sorted.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/hg19.chrom.sizes.chr21_22_only:50000 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/hg19.chrom.sizes.chr21_22_only -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/hg19.chrom.sizes.-chr -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/mock.largechr.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/mock.largechr.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample2.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample2.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/merged_nodup.tab.chrblock_sorted.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/hg19.chrom.sizes.chr21_22_only:50000 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/hg19.chrom.sizes.chr21_22_only -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/hg19.chrom.sizes.-chr -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/4dn.bsorted.chr21_22_only.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/samples/4dn.bsorted.chr21_22_only.largechr.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.9_pairix/build/pypairix.cpython-39-x86_64-linux-gnu.so -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages running install_egg_info running egg_info creating pypairix.egg-info writing pypairix.egg-info/PKG-INFO writing dependency_links to pypairix.egg-info/dependency_links.txt writing top-level names to pypairix.egg-info/top_level.txt writing manifest file 'pypairix.egg-info/SOURCES.txt' reading manifest file 'pypairix.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pypairix.egg-info/SOURCES.txt' Copying pypairix.egg-info to /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.9/dist-packages/pypairix-0.3.7.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/python-pairix-0.3.7' tar caf samples.tar.xz samples --mode=go=rX,u+rw,a-s --owner=0 --group=0 --numeric-owner dh_install find debian/python3-pairix/usr/lib -name samples -type d | xargs rm -rf find debian/*/usr/lib -name VERSION.txt -delete make[1]: Leaving directory '/build/python-pairix-0.3.7' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-pairix: substitution variable ${shlib:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-pairix: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pairix: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pairix: substitution variable ${shlibs:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package python3-pairix: substitution variable ${shlib:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-pairix: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pairix: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pairix: substitution variable ${shlibs:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pairix' in '../python3-pairix_0.3.7-3_amd64.deb'. dpkg-deb: building package 'python-pairix-examples' in '../python-pairix-examples_0.3.7-3_all.deb'. dpkg-deb: building package 'python3-pairix-dbgsym' in '../python3-pairix-dbgsym_0.3.7-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-pairix_0.3.7-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2558736 and its subdirectories I: Current time: Sat Aug 31 16:26:10 -12 2024 I: pbuilder-time-stamp: 1725164770 Sun Jul 30 22:03:11 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sun Jul 30 22:03:11 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sun Jul 30 22:14:43 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sun Jul 30 22:14:44 UTC 2023 I: python-pairix_0.3.7-3_amd64.changes: Format: 1.8 Date: Mon, 09 Nov 2020 15:26:23 +0100 Source: python-pairix Binary: python-pairix-examples python3-pairix python3-pairix-dbgsym Architecture: all amd64 Version: 0.3.7-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python-pairix-examples - 1D/2D indexing and querying with a pair of genomic coordinates (e python3-pairix - 1D/2D indexing and querying with a pair of genomic coordinates Closes: 973801 Changes: python-pairix (0.3.7-3) unstable; urgency=medium . [ Chris Lamb ] * make the build reproducible Closes: #973801 Checksums-Sha1: b5fee6835a091ed345f944e4a98a4ee8a01ccbcd 172578324 python-pairix-examples_0.3.7-3_all.deb f2cf9308ace760a5ca63837a9f1fbb3dcba7ecfb 7006 python-pairix_0.3.7-3_amd64.buildinfo ba3770591ef03eb46e634a6a30846deb1e798b6a 100844 python3-pairix-dbgsym_0.3.7-3_amd64.deb 0a17fc2912da908d6cf71f362bb976b3b9ceee5d 40544 python3-pairix_0.3.7-3_amd64.deb Checksums-Sha256: cf223e04f27d1537701baa7ecea455bbebd7efdbb1509adfcc2206786f343aa0 172578324 python-pairix-examples_0.3.7-3_all.deb fc78f5924ca1e568f0d830e88524ad0ca22b146e1111e0699ba9c683f947e7ef 7006 python-pairix_0.3.7-3_amd64.buildinfo 7a4faf00d915ed40755a5051a518ba8ad5b24a77829123802ca3b447bff33bd5 100844 python3-pairix-dbgsym_0.3.7-3_amd64.deb ada364c6128232550be178d2afb2253d2efe6f03f58726d93ee1732d73fc799c 40544 python3-pairix_0.3.7-3_amd64.deb Files: f9d1dd7cdeba5e58f8969cd71ae021bd 172578324 science optional python-pairix-examples_0.3.7-3_all.deb 3d396d4cb4431ac6e0eb647e2232fa32 7006 science optional python-pairix_0.3.7-3_amd64.buildinfo a4f157091e83151e8e9118d2e5e96ae3 100844 debug optional python3-pairix-dbgsym_0.3.7-3_amd64.deb 729fbfa639f6e18b1b40bd2b667a268f 40544 python optional python3-pairix_0.3.7-3_amd64.deb Sun Jul 30 22:14:45 UTC 2023 I: diffoscope 243 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.EOB06qKd/python-pairix_0.3.7-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.EOB06qKd/python-pairix_0.3.7-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.EOB06qKd/python-pairix_0.3.7-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.EOB06qKd/b1/python-pairix_0.3.7-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.EOB06qKd/b2/python-pairix_0.3.7-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.769s) 1.769s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 1.553s) 1.553s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun Jul 30 22:14:47 UTC 2023 I: diffoscope 243 found no differences in the changes files, and a .buildinfo file also exists. Sun Jul 30 22:14:47 UTC 2023 I: python-pairix from bullseye built successfully and reproducibly on amd64. Sun Jul 30 22:14:48 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Jul 30 22:14:48 UTC 2023 I: Submitting 8.0K b1/python-pairix_0.3.7-3_amd64.buildinfo.asc Sun Jul 30 22:14:49 UTC 2023 I: Submitting 8.0K b2/python-pairix_0.3.7-3_amd64.buildinfo.asc Sun Jul 30 22:14:49 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jul 30 22:14:49 UTC 2023 I: Done submitting .buildinfo files. Sun Jul 30 22:14:49 UTC 2023 I: Removing signed python-pairix_0.3.7-3_amd64.buildinfo.asc files: removed './b1/python-pairix_0.3.7-3_amd64.buildinfo.asc' removed './b2/python-pairix_0.3.7-3_amd64.buildinfo.asc'