Fri Aug 2 18:17:15 UTC 2024 I: starting to build python-geneimpacts/bullseye/amd64 on jenkins on '2024-08-02 18:17' Fri Aug 2 18:17:15 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_9/13149/console.log Fri Aug 2 18:17:15 UTC 2024 I: Downloading source for bullseye/python-geneimpacts=0.3.7-3 --2024-08-02 18:17:15-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-geneimpacts/python-geneimpacts_0.3.7-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2192 (2.1K) [text/prs.lines.tag] Saving to: ‘python-geneimpacts_0.3.7-3.dsc’ 0K .. 100% 256M=0s 2024-08-02 18:17:15 (256 MB/s) - ‘python-geneimpacts_0.3.7-3.dsc’ saved [2192/2192] Fri Aug 2 18:17:15 UTC 2024 I: python-geneimpacts_0.3.7-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-geneimpacts Binary: python3-geneimpacts Architecture: all Version: 0.3.7-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/brentp/geneimpacts Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/geneimpacts Vcs-Git: https://salsa.debian.org/med-team/geneimpacts.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-nose Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-nose Package-List: python3-geneimpacts deb python optional arch=all Checksums-Sha1: e301df0095872c0c1940ca39eca067de1b53ee97 33689 python-geneimpacts_0.3.7.orig.tar.gz 20dc01883c53a25583fa19116dc0fa24e3b7a03d 2620 python-geneimpacts_0.3.7-3.debian.tar.xz Checksums-Sha256: 895a0aa64935bf8528257fc5a3747c09adbf30c4885d95b0fa69ba4bb858c133 33689 python-geneimpacts_0.3.7.orig.tar.gz 3baf9302a5740c163d343fa63e6623c9a38f20a873d38f8ca90be605a469f850 2620 python-geneimpacts_0.3.7-3.debian.tar.xz Files: bdf1a1693ca1b5557a9765d1f39ba2e0 33689 python-geneimpacts_0.3.7.orig.tar.gz 659c617efe3abed8c960658ea27039ec 2620 python-geneimpacts_0.3.7-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl8V/E4UHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFKig/+KpBNGmQNQUnr5uZIZ3IyTrF03uEU Zyc7JaWLxLvbSSCFqEheCTCrSSNrfh0Jwm63JAG0Y+MOt2VjJIFc4SybqLvNLbEr Wem0YVjQOiqcivbmyywy4xJMwsEX6w7WW0llYQvuioERXeKSkv2u+QgnRljlVayR mYP1GiF3GFBnBACu5dQZNVSDgZ9o2yRQuzrRURQDFuPVTbBcVgM1PJ5nN9Sg2xsZ Q2ER6hcf/QtCFPKAAqTqywfyZIc57h6Pz/2YucJnfc2XFGMOehY5E69CD2UKDoY0 W9vdy1bdLrVWqs+3130Qe+5onLVS2FShjFOQ/toSaYKy7/On2hi1sdYtinAlAeIS tHTCo3h3oIGmMVFZ4MPuu7DtzD54WIatLZBjI9b72eaaNOC5A1gXp5zJFMo8nKCx m+DL/sIVTX7bjnLZu+yi6f0TNWem361Hu6oQOolVO5aEkDcr0Ju3/KKiVmo5Usjt 8WjJGeaT9fSXvVxy1me7ysZA6eI/s6mB4BLAP1IFoqcApGgA5DObM24q3Ul14qGi ER/axDNM+nPdE9RGu4bPu0Rn8TiskEP7vimYd9NC+FTGGAElF+11RmpJ/IO7eYhH BrHbVFccg6bKPxT8L6gaZCRb1wttkPg5V55A/1aRuX82aoplCjRyqZUVsFfyvNz4 zWjYmuOxIZkqoLs= =KUze -----END PGP SIGNATURE----- Fri Aug 2 18:17:15 UTC 2024 I: Checking whether the package is not for us Fri Aug 2 18:17:15 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Aug 2 18:17:15 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Aug 2 18:18:55 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Aug 2 06:17:18 -12 2024 I: pbuilder-time-stamp: 1722622638 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-geneimpacts_0.3.7-3.dsc] I: copying [./python-geneimpacts_0.3.7.orig.tar.gz] I: copying [./python-geneimpacts_0.3.7-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.C_n5pznF/trustedkeys.kbx': General error gpgv: Signature made Mon Jul 20 08:19:26 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-geneimpacts_0.3.7-3.dsc dpkg-source: info: extracting python-geneimpacts in python-geneimpacts-0.3.7 dpkg-source: info: unpacking python-geneimpacts_0.3.7.orig.tar.gz dpkg-source: info: unpacking python-geneimpacts_0.3.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2179047/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=20 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4213215e96724e4da8f646f30e0232a6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2179047' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YcCWJAJ9/pbuilderrc_k14z --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YcCWJAJ9/b1 --logfile b1/build.log python-geneimpacts_0.3.7-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Mar 27 22:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 69032 Mar 27 22:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Mar 27 22:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Mar 27 22:09 more -rwsr-xr-x 1 root root 55528 Mar 27 22:09 mount -rwxr-xr-x 1 root root 18664 Mar 27 22:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 21:26 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Mar 27 22:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Jan 19 2024 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Mar 27 22:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Mar 27 22:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2179047/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-nose dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19711 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-nose{a} python3-pkg-resources{a} python3-setuptools{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 24.8 MB of archives. After unpacking 93.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u2 [146 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3+deb11u1 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3+deb11u1 [128 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3+deb11u1 [69.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 48 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 python3-nose all 1.3.7-7 [133 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 24.8 MB in 2s (13.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u2_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20578 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../4-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20999 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3+deb11u1_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3+deb11u1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.39-3+deb11u1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3+deb11u1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3+deb11u1_amd64.deb ... Unpacking file (1:5.39-3+deb11u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../06-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../12-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../16-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../17-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../18-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../19-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../21-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7+deb11u4_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../27-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../28-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../29-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package python3-all. Preparing to unpack .../30-python3-all_3.9.2-3_amd64.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../31-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-nose. Preparing to unpack .../32-python3-nose_1.3.7-7_all.deb ... Unpacking python3-nose (1.3.7-7) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../33-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-8+deb11u2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:amd64 (1:5.39-3+deb11u1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3+deb11u1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-all (3.9.2-3) ... Setting up python3-nose (1.3.7-7) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-geneimpacts-0.3.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-geneimpacts_0.3.7-3_source.changes dpkg-buildpackage: info: source package python-geneimpacts dpkg-buildpackage: info: source version 0.3.7-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-geneimpacts-0.3.7/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild install -d /build/reproducible-path/python-geneimpacts-0.3.7/debian/.debhelper/generated/_source/home pybuild --clean --test-nose -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-geneimpacts.substvars debian/files rm -fr -- debian/python3-geneimpacts/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild install -d /build/reproducible-path/python-geneimpacts-0.3.7/debian/.debhelper/generated/_source/home pybuild --configure --test-nose -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build --test-nose -i python{version} -p 3.9 I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts copying geneimpacts/__init__.py -> /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts copying geneimpacts/effect.py -> /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts creating /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests copying geneimpacts/tests/test_impacts.py -> /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests copying geneimpacts/tests/__init__.py -> /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests running egg_info creating geneimpacts.egg-info writing geneimpacts.egg-info/PKG-INFO writing dependency_links to geneimpacts.egg-info/dependency_links.txt writing top-level names to geneimpacts.egg-info/top_level.txt writing manifest file 'geneimpacts.egg-info/SOURCES.txt' reading manifest file 'geneimpacts.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'geneimpacts.egg-info/SOURCES.txt' copying geneimpacts/tests/bcfts.txt.gz -> /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests copying geneimpacts/tests/snpeff-anns.txt.gz -> /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests copying geneimpacts/tests/vep-csqs.txt.gz -> /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests dh_auto_test -O--buildsystem=pybuild pybuild --test --test-nose -i python{version} -p 3.9 I: pybuild base:232: cd /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build; python3.9 -m nose -v geneimpacts.tests.test_impacts.test_bug ... ok geneimpacts.tests.test_impacts.test_snpeff ... ok geneimpacts.tests.test_impacts.test_unused ... ok geneimpacts.tests.test_impacts.test_vep ... ok geneimpacts.tests.test_impacts.test_vep_canonical ... ok geneimpacts.tests.test_impacts.test_bcfts ... WARNING: unknown severity for '@874816' with effect '@874816' Please report this on github with the effect-string above WARNING: unknown severity for '@874816' with effect '@874816' Please report this on github with the effect-string above WARNING: unknown severity for '@874816' with effect '@874816' Please report this on github with the effect-string above WARNING: unknown severity for '@874816' with effect '@874816' Please report this on github with the effect-string above WARNING: unknown severity for '@874816' with effect '@874816' Please report this on github with the effect-string above ok geneimpacts.tests.test_impacts.test_veps ... ok geneimpacts.tests.test_impacts.test_snpeffs ... ok geneimpacts.tests.test_impacts.test_order ... ok geneimpacts.tests.test_impacts.test_canonical_order ... ok geneimpacts.tests.test_impacts.test_o2 ... ok geneimpacts.tests.test_impacts.test_highest ... ok geneimpacts.tests.test_impacts.test_splice ... ok geneimpacts.tests.test_impacts.test_eff_splice ... ok geneimpacts.tests.test_impacts.test_regr ... ok geneimpacts.tests.test_impacts.test_aa_change ... ok geneimpacts.tests.test_impacts.test_old ... ok geneimpacts.tests.test_impacts.test_old2 ... ok geneimpacts.tests.test_impacts.test_weird_vep ... ok geneimpacts.tests.test_impacts.test_empty_snpeff ... ok geneimpacts.tests.test_impacts.test_protein_contact ... ok geneimpacts.tests.test_impacts.test_gemini_issue812 ... ok geneimpacts.tests.test_impacts.test_bug_vcf2db_21 ... ok geneimpacts.tests.test_impacts.test_32 ... ok ---------------------------------------------------------------------- Ran 24 tests in 0.106s OK rm -fr -- /tmp/dh-xdg-rundir-oHiz7Q9W create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-geneimpacts.substvars rm -fr -- debian/.debhelper/generated/python3-geneimpacts/ debian/python3-geneimpacts/ debian/tmp/ dh_auto_install -O--buildsystem=pybuild install -d /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts pybuild --install --test-nose -i python{version} -p 3.9 --dest-dir /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts running install running build running build_py running egg_info writing geneimpacts.egg-info/PKG-INFO writing dependency_links to geneimpacts.egg-info/dependency_links.txt writing top-level names to geneimpacts.egg-info/top_level.txt reading manifest file 'geneimpacts.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'geneimpacts.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr creating /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib creating /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9 creating /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages creating /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts creating /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/__pycache__ copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/__pycache__/effect.cpython-39.pyc -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/__pycache__ copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/__pycache__ copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/__init__.py -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts creating /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests/test_impacts.py -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests creating /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests/__pycache__ copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests/__pycache__/test_impacts.cpython-39.pyc -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests/__pycache__ copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests/__pycache__ copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests/__init__.py -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests/snpeff-anns.txt.gz -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests/vep-csqs.txt.gz -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/tests/bcfts.txt.gz -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests copying /build/reproducible-path/python-geneimpacts-0.3.7/.pybuild/cpython3_3.9_geneimpacts/build/geneimpacts/effect.py -> /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts byte-compiling /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests/test_impacts.py to test_impacts.cpython-39.pyc byte-compiling /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts/effect.py to effect.cpython-39.pyc running install_egg_info Copying geneimpacts.egg-info to /build/reproducible-path/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.9/dist-packages/geneimpacts-0.3.7.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild install -d debian/python3-geneimpacts/usr/share/doc/python3-geneimpacts install -d debian/.debhelper/generated/python3-geneimpacts install -p -m0644 debian/copyright debian/python3-geneimpacts/usr/share/doc/python3-geneimpacts/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-geneimpacts/usr/share/doc/python3-geneimpacts/changelog.Debian install -p -m0644 ./CHANGES.md debian/python3-geneimpacts/usr/share/doc/python3-geneimpacts/changelog dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:152: source=python-geneimpacts, binary packages=['python3-geneimpacts'] D: dh_python3 dh_python3:183: processing package python3-geneimpacts... D: dh_python3 fs:49: moving files from debian/python3-geneimpacts/usr/lib/python3.9/dist-packages to debian/python3-geneimpacts/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-geneimpacts details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-geneimpacts D: dh_python3 depends:275: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild Using 1595243754 as canonical time Normalizing debian/python3-geneimpacts/usr/lib/python3/dist-packages/geneimpacts/tests/snpeff-anns.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-geneimpacts/usr/lib/python3/dist-packages/geneimpacts/tests/vep-csqs.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-geneimpacts/usr/lib/python3/dist-packages/geneimpacts/tests/bcfts.txt.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-geneimpacts chmod a-x usr/share/doc/python3-geneimpacts/changelog usr/share/doc/python3-geneimpacts/changelog.Debian gzip -9nf usr/share/doc/python3-geneimpacts/changelog usr/share/doc/python3-geneimpacts/changelog.Debian cd '/build/reproducible-path/python-geneimpacts-0.3.7' dh_fixperms -O--buildsystem=pybuild find debian/python3-geneimpacts ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-geneimpacts/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-geneimpacts/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-geneimpacts/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-geneimpacts -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-geneimpacts/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -d debian/python3-geneimpacts/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-geneimpacts/DEBIAN/postinst cat debian/python3-geneimpacts.postinst.debhelper >> debian/python3-geneimpacts/DEBIAN/postinst chmod 0755 -- debian/python3-geneimpacts/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-geneimpacts/DEBIAN/prerm cat debian/python3-geneimpacts.prerm.debhelper >> debian/python3-geneimpacts/DEBIAN/prerm chmod 0755 -- debian/python3-geneimpacts/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-geneimpacts.substvars echo misc:Pre-Depends= >> debian/python3-geneimpacts.substvars dpkg-gencontrol -ppython3-geneimpacts -ldebian/changelog -Tdebian/python3-geneimpacts.substvars -Pdebian/python3-geneimpacts chmod 0644 -- debian/python3-geneimpacts/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/python3-geneimpacts >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-geneimpacts/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-geneimpacts .. dpkg-deb: building package 'python3-geneimpacts' in '../python3-geneimpacts_0.3.7-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-geneimpacts_0.3.7-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-geneimpacts-0.3.7/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2179047 and its subdirectories I: Current time: Fri Aug 2 06:18:54 -12 2024 I: pbuilder-time-stamp: 1722622734 Fri Aug 2 18:18:56 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri Aug 2 18:18:56 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri Aug 2 18:19:33 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri Aug 2 18:19:34 UTC 2024 I: python-geneimpacts_0.3.7-3_amd64.changes: Format: 1.8 Date: Mon, 20 Jul 2020 16:45:54 +0530 Source: python-geneimpacts Binary: python3-geneimpacts Architecture: all Version: 0.3.7-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-geneimpacts - wraps command line tools to assess variants in gene sequences Changes: python-geneimpacts (0.3.7-3) unstable; urgency=medium . * Team Upload. . [ Steffen Moeller ] * Added ref to conda . [ Nilesh Patra ] * Add autopkgtests * Update metadata * Drop compat, switch to debhelper compat * Add "Rules-Requires-Root:no" Checksums-Sha1: f53ce60a7ecc20f1f481d1b6bdcb96bee8b10141 5733 python-geneimpacts_0.3.7-3_amd64.buildinfo 5a5ad186166d933a9f9a7a6b3b0c1b7e5ced6ea7 33664 python3-geneimpacts_0.3.7-3_all.deb Checksums-Sha256: 5dbb48def282c8221eec9b2afc6ab9339ff16168aec0935da77f2b2b70f1b0e8 5733 python-geneimpacts_0.3.7-3_amd64.buildinfo 80e8d41d7371890f8e86facd87e8a0211af69c1af0496859a79ebca8cbd3f1d0 33664 python3-geneimpacts_0.3.7-3_all.deb Files: cd46c5c9b8ae1225291c46e502753e07 5733 science optional python-geneimpacts_0.3.7-3_amd64.buildinfo be288960b91796e2a2d77dc2429c2304 33664 python optional python3-geneimpacts_0.3.7-3_all.deb Fri Aug 2 18:19:35 UTC 2024 I: diffoscope 272 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_9-13149.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.YcCWJAJ9/python-geneimpacts_0.3.7-3.diffoscope.html --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.YcCWJAJ9/b1/python-geneimpacts_0.3.7-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.YcCWJAJ9/b2/python-geneimpacts_0.3.7-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.271s) 0.271s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 540ms CPU time consumed: 544ms Fri Aug 2 18:19:36 UTC 2024 I: diffoscope 272 found no differences in the changes files, and a .buildinfo file also exists. Fri Aug 2 18:19:36 UTC 2024 I: python-geneimpacts from bullseye built successfully and reproducibly on amd64. Fri Aug 2 18:19:37 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Aug 2 18:19:37 UTC 2024 I: Submitting 8.0K b1/python-geneimpacts_0.3.7-3_amd64.buildinfo.asc Fri Aug 2 18:19:38 UTC 2024 I: Submitting 8.0K b2/python-geneimpacts_0.3.7-3_amd64.buildinfo.asc Fri Aug 2 18:19:39 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Aug 2 18:19:39 UTC 2024 I: Done submitting .buildinfo files. Fri Aug 2 18:19:39 UTC 2024 I: Removing signed python-geneimpacts_0.3.7-3_amd64.buildinfo.asc files: removed './b1/python-geneimpacts_0.3.7-3_amd64.buildinfo.asc' removed './b2/python-geneimpacts_0.3.7-3_amd64.buildinfo.asc'