Thu Jan 20 01:55:54 UTC 2022 I: starting to build python-freecontact/bullseye/amd64 on jenkins on '2022-01-20 01:55' Thu Jan 20 01:55:54 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/50772/console.log Thu Jan 20 01:55:54 UTC 2022 I: Downloading source for bullseye/python-freecontact=1.1-5 --2022-01-20 01:55:54-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-freecontact/python-freecontact_1.1-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) Saving to: ‘python-freecontact_1.1-5.dsc’ 0K .. 100% 17.3M=0s 2022-01-20 01:55:55 (17.3 MB/s) - ‘python-freecontact_1.1-5.dsc’ saved [2224/2224] Thu Jan 20 01:55:55 UTC 2022 I: python-freecontact_1.1-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-freecontact Binary: python3-freecontact Architecture: any Version: 1.1-5 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Alexandre Mestiashvili Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/python-freecontact Vcs-Git: https://salsa.debian.org/med-team/python-freecontact.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 12), dh-python, libboost-python-dev, libfreecontact-dev, python3-all-dev Package-List: python3-freecontact deb python optional arch=any Checksums-Sha1: 18a0f44daa9d1a10cdcce0e48cf7b0d914228868 65968 python-freecontact_1.1.orig.tar.gz 730e85a822375df9501904e6bead86e983a7e86f 3976 python-freecontact_1.1-5.debian.tar.xz Checksums-Sha256: 895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85 65968 python-freecontact_1.1.orig.tar.gz 222bdf44f55da6d3a8a2b6d38500b5cf7af98963c446273f34cbceeb6fe41a8d 3976 python-freecontact_1.1-5.debian.tar.xz Files: 17a99d6514c125b4005f0cd494ae81a4 65968 python-freecontact_1.1.orig.tar.gz 02c1ea9846bc30ea59fb3c5172ffec94 3976 python-freecontact_1.1-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl1vdDgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFdbxAAhdB1PyMj5hqR5zk4NbETD7BT/iZ6FiX3 k7FKclQLLDDLxzUOhTOfEE5vaJ4pk9bir3ecBJME5jN3Kd7+HpXjgTXDlCjV59/O nCi8S9u7WKMBHI6p+xpoIgSqHIdEpUlrNvVOxDgrpzwm51k8cJcsac+L1vPhzw+j ZLethaJYZdWvCyWT+u4ojFP0ubB949YMOk0gjOFzjpTcOSQIgAYOXg1y7Oct9hrh c1xN9eCHbCORakAoyWiIUvYykhlWS4p3794CXwifM991RXguAL6F4aH32IWpcwWT mjZPIqYRxxX4rPc0O/qFpJcCxJkBGlZ7AjZoJMJKVSgdqIZhtaqJxYo5kMYnYnYD eq35tJu5Au//xu1Q7Gl+3zXpFqVD1Hoh12NPJ5HTq2ur3BkZT85JcJB101IyjNeI xbpPkYva2QCXy208ysd6EVHKOdfCPfnQJKg+GbsPnCkqD41AYT8gbejzoHzm6u4R aEJaNtvjPpJrIAkrBmBYWbkrff0F1XO16Zt/Cn81vHKoPRAI5+A0vTLeZwCgzFAv yoEbtBa/lT58vK5sL67vLdVDOK2HVfBxxz1E+fSv4K/YQOsbbQXzOOHkQxrGkROQ eymshwlV6W/Q4uGvN+Qsun7ahJxkjnDpeWhVzxhYOBvRGlDutppiwDAgFNp1gp7X HXPoCFKV3P0= =Ky2d -----END PGP SIGNATURE----- Thu Jan 20 01:55:55 UTC 2022 I: Checking whether the package is not for us Thu Jan 20 01:55:55 UTC 2022 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu Jan 20 01:55:55 UTC 2022 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu Jan 20 01:57:30 UTC 2022 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 19 13:55:55 -12 2022 I: pbuilder-time-stamp: 1642643755 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-freecontact_1.1-5.dsc] I: copying [./python-freecontact_1.1.orig.tar.gz] I: copying [./python-freecontact_1.1-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.Ep6HRJ47/trustedkeys.kbx': General error gpgv: Signature made Tue Sep 3 20:22:16 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-freecontact_1.1-5.dsc dpkg-source: info: extracting python-freecontact in python-freecontact-1.1 dpkg-source: info: unpacking python-freecontact_1.1.orig.tar.gz dpkg-source: info: unpacking python-freecontact_1.1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying py3_test_fixes.patch dpkg-source: info: applying py3_boost.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1654149/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9a1ccb6b20814c17b6bc01c0af86fd80' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1654149' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qABsqsPWUH/pbuilderrc_IXcQ --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qABsqsPWUH/b1 --logfile b1/build.log python-freecontact_1.1-5.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/1654149/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, libboost-python-dev, libfreecontact-dev, python3-all-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost1.74-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0v5{a} libgfortran5{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 44.6 MB of archives. After unpacking 277 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libboost-python1.74.0 amd64 1.74.0-9 [313 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2 [140 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libboost-python1.74-dev amd64 1.74.0-9 [336 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libboost-python-dev amd64 1.74.0.3 [4632 B] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libfreecontact0v5 amd64 1.0.21-9 [74.7 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libfreecontact-dev amd64 1.0.21-9 [83.6 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libpython3-all-dev amd64 3.9.2-3 [1068 B] Get: 67 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 68 http://deb.debian.org/debian bullseye/main amd64 python3-all-dev amd64 3.9.2-3 [1064 B] Fetched 44.6 MB in 1s (56.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... 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Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.2.10-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libboost-python1.74.0 (1.74.0-9) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libfreecontact0v5:amd64 (1.0.21-9) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfreecontact-dev (1.0.21-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-all (3.9.2-3) ... Setting up libpython3-all-dev:amd64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-all-dev (3.9.2-3) ... Setting up libboost-python1.74-dev (1.74.0-9) ... Setting up libboost-python-dev (1.74.0.3) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freecontact_1.1-5_source.changes dpkg-buildpackage: info: source package python-freecontact dpkg-buildpackage: info: source version 1.1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-freecontact-1.1/debian/source/options: --single-debian-patch fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_auto_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_clean: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --clean -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-freecontact-1.1/.pybuild/cpython3_3.9_freecontact/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-freecontact.substvars debian/files rm -fr -- debian/python3-freecontact/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_update_autotools_config -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_autoreconf -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_configure -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_configure: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --configure -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_build: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --build -i python{version} -p 3.9 I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_ext building 'freecontact' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-freecontact-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/freecontact.cpp -o build/temp.linux-x86_64-3.9/src/freecontact.o In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from src/freecontact.cpp:17: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-freecontact-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/src/freecontact.o -lfreecontact -lboost_python39 -o /build/python-freecontact-1.1/.pybuild/cpython3_3.9_freecontact/build/freecontact.cpython-39-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-freecontact-1.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} /build/python-freecontact-1.1/test/test01.py" \ dh_auto_test dh_auto_test: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --test -i python{version} -p 3.9 I: pybuild base:232: python3.9 /build/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads SSE2 veczweight, wchunk = 128 total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.006454 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.178024 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 7.09019 secs, inverted matrix (incl LUf) in 24.404 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 all done in 24.8819 secs . ---------------------------------------------------------------------- Ran 3 tests in 24.898s OK  !!!Skipping the rest of the tests for python3.9, need to be fixed! make[1]: Leaving directory '/build/python-freecontact-1.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_testroot -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_prep -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f -- debian/python3-freecontact.substvars rm -fr -- debian/.debhelper/generated/python3-freecontact/ debian/python3-freecontact/ debian/tmp/ dh_auto_install -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d /build/python-freecontact-1.1/debian/python3-freecontact dh_auto_install: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --install -i python{version} -p 3.9 --dest-dir /build/python-freecontact-1.1/debian/python3-freecontact I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-freecontact-1.1/debian/python3-freecontact running install running build running build_ext running install_lib creating /build/python-freecontact-1.1/debian/python3-freecontact/usr creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.9 creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.9/dist-packages copying /build/python-freecontact-1.1/.pybuild/cpython3_3.9_freecontact/build/freecontact.cpython-39-x86_64-linux-gnu.so -> /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.9/dist-packages running install_egg_info Writing /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.9/dist-packages/python_freecontact-1.1.egg-info dh_installdocs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -d debian/.debhelper/generated/python3-freecontact install -p -m0644 debian/copyright debian/python3-freecontact/usr/share/doc/python3-freecontact/copyright dh_installchangelogs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -p -m0644 debian/changelog debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog.Debian install -p -m0644 ./Changes debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog dh_installexamples -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/python3-freecontact/usr/share/doc/python3-freecontact/examples cp --reflink=auto -a ./examples/demo_1000.aln debian/python3-freecontact/usr/share/doc/python3-freecontact/examples dh_python3 -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild', '-O--builddirectory=/build/python-freecontact-1.1/builddir'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--builddirectory=/build/python-freecontact-1.1/builddir'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:152: source=python-freecontact, binary packages=['python3-freecontact'] D: dh_python3 dh_python3:183: processing package python3-freecontact... D: dh_python3 fs:49: moving files from debian/python3-freecontact/usr/lib/python3.9/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python3-freecontact/usr/lib/python3/dist-packages/python_freecontact-1.1.egg-info'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('3.9')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-freecontact D: dh_python3 depends:275: D={'python3 (<< 3.10)', 'python3 (>= 3.9~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_installsystemduser -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_perl -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_link -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_strip_nondeterminism -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_compress -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir cd debian/python3-freecontact chmod a-x usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian gzip -9nf usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian cd '/build/python-freecontact-1.1' dh_fixperms -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir find debian/python3-freecontact -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-freecontact ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-freecontact/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-freecontact/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-freecontact -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_dwz -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dwz -- debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-39-x86_64-linux-gnu.so dh_strip -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/9e/dc6b676becf20cb892a4e5313b90383379ac81.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/9e/dc6b676becf20cb892a4e5313b90383379ac81.debug chown 0:0 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/9e/dc6b676becf20cb892a4e5313b90383379ac81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/9e/dc6b676becf20cb892a4e5313b90383379ac81.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc ln -s python3-freecontact debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc/python3-freecontact-dbgsym dh_makeshlibs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f debian/python3-freecontact/DEBIAN/shlibs dh_shlibdeps -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/python3-freecontact/DEBIAN dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-39-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_gencontrol -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir echo misc:Depends= >> debian/python3-freecontact.substvars echo misc:Pre-Depends= >> debian/python3-freecontact.substvars install -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -Pdebian/.debhelper/python3-freecontact/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-freecontact-dbgsym "-DDepends=python3-freecontact (= \${binary:Version})" "-DDescription=debug symbols for python3-freecontact" -DBuild-Ids=9edc6b676becf20cb892a4e5313b90383379ac81 -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -Pdebian/python3-freecontact dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-freecontact/DEBIAN/control chown 0:0 -- debian/python3-freecontact/DEBIAN/control dh_md5sums -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir cd debian/python3-freecontact >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-freecontact/DEBIAN/md5sums chown 0:0 -- debian/python3-freecontact/DEBIAN/md5sums cd debian/.debhelper/python3-freecontact/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dpkg-deb --build debian/python3-freecontact .. dpkg-deb --build debian/.debhelper/python3-freecontact/dbgsym-root .. dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-5_amd64.deb'. dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-5_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-freecontact_1.1-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-freecontact-1.1/debian/source/options: --single-debian-patch dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1654149 and its subdirectories I: Current time: Wed Jan 19 13:57:29 -12 2022 I: pbuilder-time-stamp: 1642643849 Thu Jan 20 01:57:30 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu Jan 20 01:57:30 UTC 2022 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu Jan 20 01:59:44 UTC 2022 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu Jan 20 01:59:44 UTC 2022 I: python-freecontact_1.1-5_amd64.changes: Format: 1.8 Date: Wed, 04 Sep 2019 10:13:14 +0200 Source: python-freecontact Binary: python3-freecontact python3-freecontact-dbgsym Architecture: amd64 Version: 1.1-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-freecontact - fast protein contact predictor - binding for Python3 Closes: 937765 Changes: python-freecontact (1.1-5) unstable; urgency=medium . * Drop Python2 support (normalise package description since only one binary package is remaining) Closes: #937765 * debhelper-compat 12 * Standards-Version: 4.4.0 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove obsolete fields Name, Contact from debian/upstream/metadata. Checksums-Sha1: 384f65a0a5f3920ead9e5b3593940023622d2b04 6326 python-freecontact_1.1-5_amd64.buildinfo 4cded331b2b8f33ecaa402e8f0ecda78ee05bd7a 447084 python3-freecontact-dbgsym_1.1-5_amd64.deb 88f8f14e00ceca2a3de34884ac151885b616a4c4 73324 python3-freecontact_1.1-5_amd64.deb Checksums-Sha256: bea81793a594bd99796e87f75a7c35be58dea95039717be1b4e68770f75c7a10 6326 python-freecontact_1.1-5_amd64.buildinfo 01715a61f6cb8c0ace03d7e478ab3bbf8f94dc4907045f70155bc1b65540c0bc 447084 python3-freecontact-dbgsym_1.1-5_amd64.deb 413c2461f4bd690775905192a6d5f98cc0a18f1f02024192bf5711204ec91643 73324 python3-freecontact_1.1-5_amd64.deb Files: 3a5480a9f1373b9ddea93119fbaa933d 6326 python optional python-freecontact_1.1-5_amd64.buildinfo 221056f99a4f5286c591b727ab2e3d83 447084 debug optional python3-freecontact-dbgsym_1.1-5_amd64.deb 6eec0cf73a90ba824dcb0b00ff1d710f 73324 python optional python3-freecontact_1.1-5_amd64.deb Thu Jan 20 01:59:46 UTC 2022 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.qABsqsPWUH/python-freecontact_1.1-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.qABsqsPWUH/python-freecontact_1.1-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.qABsqsPWUH/python-freecontact_1.1-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.qABsqsPWUH/b1/python-freecontact_1.1-5_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.qABsqsPWUH/b2/python-freecontact_1.1-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.273s) 0.273s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jan 20 01:59:48 UTC 2022 I: found no differences in the changes files, and a .buildinfo file also exists. Thu Jan 20 01:59:48 UTC 2022 I: python-freecontact from bullseye built successfully and reproducibly on amd64. Thu Jan 20 01:59:49 UTC 2022 I: Submitting .buildinfo files to external archives: Thu Jan 20 01:59:49 UTC 2022 I: Submitting 8.0K b1/python-freecontact_1.1-5_amd64.buildinfo.asc Thu Jan 20 01:59:51 UTC 2022 I: Submitting 8.0K b2/python-freecontact_1.1-5_amd64.buildinfo.asc Thu Jan 20 01:59:52 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jan 20 01:59:52 UTC 2022 I: Done submitting .buildinfo files. Thu Jan 20 01:59:52 UTC 2022 I: Removing signed python-freecontact_1.1-5_amd64.buildinfo.asc files: removed './b1/python-freecontact_1.1-5_amd64.buildinfo.asc' removed './b2/python-freecontact_1.1-5_amd64.buildinfo.asc'