Thu Oct 28 21:18:41 UTC 2021 I: starting to build pychopper/bullseye/amd64 on jenkins on '2021-10-28 21:18' Thu Oct 28 21:18:41 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_32/85708/console.log Thu Oct 28 21:18:41 UTC 2021 I: Downloading source for bullseye/pychopper=2.5.0-1 --2021-10-28 21:18:41-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pychopper/pychopper_2.5.0-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2771 (2.7K) Saving to: ‘pychopper_2.5.0-1.dsc’ 0K .. 100% 243M=0s 2021-10-28 21:18:41 (243 MB/s) - ‘pychopper_2.5.0-1.dsc’ saved [2771/2771] Thu Oct 28 21:18:41 UTC 2021 I: pychopper_2.5.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pychopper Binary: python3-pychopper Architecture: all Version: 2.5.0-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/nanoporetech/pychopper Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/pychopper Vcs-Git: https://salsa.debian.org/med-team/pychopper.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-sphinx, python3-sphinx-argparse, python3-sphinx-rtd-theme, python3-all, python3-edlib , python3-parasail , python3-matplotlib , python3-seaborn , python3-tqdm , python3-six , python3-pandas , python3-pytest , python3-pytest-arraydiff , python3-pytest-cov , python3-pytest-doctestplus , python3-pytest-forked , python3-pytest-openfiles , python3-pytest-remotedata , python3-pytest-timeout , python3-pytest-xdist , python3-hypothesis , python3-pytest-mock , xonsh Package-List: python3-pychopper deb python optional arch=all Checksums-Sha1: 474a24b17282bf550a5637daa92db644e825ab7e 41026359 pychopper_2.5.0.orig.tar.gz d33587078e08c73bd4d2d58947f28d6f3788f80c 3808 pychopper_2.5.0-1.debian.tar.xz Checksums-Sha256: 1800a2c5e19f2a025da579608e87ec1a802cf5196fc9e8fed936cb09e2e5e465 41026359 pychopper_2.5.0.orig.tar.gz 6a8c99f2ee40a868dcd667900b7362d0f9553c08f680f1a380fc1fd6fa1e158f 3808 pychopper_2.5.0-1.debian.tar.xz Files: e6e9ce140c54fd8fe7a22f74dece6969 41026359 pychopper_2.5.0.orig.tar.gz 032b260b4552011420c8c99c35de6825 3808 pychopper_2.5.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl+W0sgUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFAxQ/+N91TgtHuv0YvihFi23mHePI+Agiv yAs623BeWpnhPkVrbOLy7gnU9fq5nmU3pLZzKpZqPQaK8UkhBRvBY9bcDge71CW/ Zs8EWbBtxwV2iP+wrDDMYtUPRwZWFmFTDB/FnYJfBKkAtdpm0os0VGxCEmWlKpnM tz5EelJOhMgEbcudRNxw/CsrZ+h7DheEib2LlsyRSqhx2axbomt/MXe6Yofr2imB qWrt9oKRKW9VqFdcCxevx/rCE4d6zS7BNa5M42wHRqWZQdpKd+u021wB2HJyjdm0 fz2nWVmDpd3P0W7VKeONExMzPvsUgkXq1/bBZcyGlpJY+IXXfjCGp5dyUcAK5wqk wYlVAixKv1muefOc9Nkz+6JUOTOzVqSSSvR1zQLjObwjsTv4Tnxwni+acNj+oSHW nnW7SiGoQT8oB7yXXIlRjWDHi08aifzx+r/5iNLlw/jX+x0KM1hFcJSOUX+mfFo9 xJhRRGg3MP/fRUSx0veIQANy7P4pPLDRLuvu6zk+YpYl9aN3Ueu3h0SUOWLFYTbk NqdopvcyBMMLY6UwiX3/fbLjgF6GqUFXrMngYrKFu1ICdVpoo4T1z7CICsVGPkAZ lTINt0X+odnoNMlVd9C0VB1kDS2uFYS+/UU7htx8oRlBewpy37QvP59Fb3TRmePj DryFpfSnmGqv9hE= =kJWD -----END PGP SIGNATURE----- Thu Oct 28 21:18:41 UTC 2021 I: Checking whether the package is not for us Thu Oct 28 21:18:41 UTC 2021 I: Starting 1st build on remote node ionos15-amd64.debian.net. Thu Oct 28 21:18:41 UTC 2021 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Thu Oct 28 21:24:25 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 30 15:41:46 -12 2022 I: pbuilder-time-stamp: 1669866106 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pychopper_2.5.0-1.dsc] I: copying [./pychopper_2.5.0.orig.tar.gz] I: copying [./pychopper_2.5.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.O7lM6UGB/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 26 01:44:40 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pychopper_2.5.0-1.dsc dpkg-source: info: extracting pychopper in pychopper-2.5.0 dpkg-source: info: unpacking pychopper_2.5.0.orig.tar.gz dpkg-source: info: unpacking pychopper_2.5.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/139262/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d89aa5a028294202b9f7eaad0dbdc764' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='139262' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.yBQGNvyeV9/pbuilderrc_96fU --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.yBQGNvyeV9/b1 --logfile b1/build.log pychopper_2.5.0-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 23 06:05 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/139262/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-sphinx, python3-sphinx-argparse, python3-sphinx-rtd-theme, python3-all, python3-edlib, python3-parasail, python3-matplotlib, python3-seaborn, python3-tqdm, python3-six, python3-pandas, python3-pytest, python3-pytest-arraydiff, python3-pytest-cov, python3-pytest-doctestplus, python3-pytest-forked, python3-pytest-openfiles, python3-pytest-remotedata, python3-pytest-timeout, python3-pytest-xdist, python3-hypothesis, python3-pytest-mock, xonsh dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-argparse; however: Package python3-sphinx-argparse is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-edlib; however: Package python3-edlib is not installed. pbuilder-satisfydepends-dummy depends on python3-parasail; however: Package python3-parasail is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-arraydiff; however: Package python3-pytest-arraydiff is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-doctestplus; however: Package python3-pytest-doctestplus is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-forked; however: Package python3-pytest-forked is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-openfiles; however: Package python3-pytest-openfiles is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-remotedata; however: Package python3-pytest-remotedata is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-timeout; however: Package python3-pytest-timeout is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. pbuilder-satisfydepends-dummy depends on python3-hypothesis; however: Package python3-hypothesis is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on xonsh; however: Package xonsh is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-font-awesome{a} fonts-lato{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libparasail-dev{a} libparasail3{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtcl8.6{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-apipkg{a} python3-attr{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-cov-core{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-docutils{a} python3-edlib{a} python3-execnet{a} python3-hypothesis{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-nose2{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parasail{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-psutil{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-arraydiff{a} python3-pytest-cov{a} python3-pytest-doctestplus{a} python3-pytest-forked{a} python3-pytest-mock{a} python3-pytest-openfiles{a} python3-pytest-remotedata{a} python3-pytest-timeout{a} python3-pytest-xdist{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sortedcontainers{a} python3-sphinx{a} python3-sphinx-argparse{a} python3-sphinx-rtd-theme{a} python3-tk{a} python3-toml{a} python3-tqdm{a} python3-tz{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} tk8.6-blt2.5{a} ttf-bitstream-vera{a} ucf{a} x11-common{a} xml-core{a} xonsh{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-bottleneck python3-bs4 python3-click python3-html5lib python3-lxml python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-patsy python3-prompt-toolkit python3-setproctitle python3-tables python3-xlwt wget 0 packages upgraded, 175 newly installed, 0 to remove and 0 not upgraded. Need to get 83.2 MB of archives. After unpacking 341 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 sgml-base all 1.30 [15.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1k-1+deb11u1 [851 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1 [311 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1 [772 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 docutils-common all 0.16+dfsg-4 [129 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 89 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-metadata all 12-3 [7660 B] Get: 90 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-1 [185 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-1.1 [6412 B] Get: 92 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 libparasail3 amd64 2.4.3+dfsg-2 [1536 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 libparasail-dev amd64 2.4.3+dfsg-2 [131 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1 [289 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1 [87.7 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1 [97.6 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get: 105 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 108 http://deb.debian.org/debian bullseye/main amd64 python3-apipkg all 1.5-7 [9628 B] Get: 109 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get: 110 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 111 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get: 112 http://deb.debian.org/debian bullseye/main amd64 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get: 113 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get: 114 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get: 115 http://deb.debian.org/debian bullseye/main amd64 python3-coverage amd64 5.1+dfsg.1-2+b2 [169 kB] Get: 116 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 117 http://deb.debian.org/debian bullseye/main amd64 python3-nose2 all 0.9.2-1 [94.1 kB] Get: 118 http://deb.debian.org/debian bullseye/main amd64 python3-cov-core all 1.15.0-3 [7528 B] Get: 119 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get: 120 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 121 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 122 http://deb.debian.org/debian bullseye/main amd64 python3-roman all 2.0.0-5 [9064 B] Get: 123 http://deb.debian.org/debian bullseye/main amd64 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 124 http://deb.debian.org/debian bullseye/main amd64 python3-edlib amd64 1.2.6-1 [58.7 kB] Get: 125 http://deb.debian.org/debian bullseye/main amd64 python3-execnet all 1.7.1-4 [41.1 kB] Get: 126 http://deb.debian.org/debian bullseye/main amd64 python3-sortedcontainers all 2.1.0-2 [31.4 kB] Get: 127 http://deb.debian.org/debian bullseye/main amd64 python3-hypothesis all 5.43.3-1 [228 kB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get: 129 http://deb.debian.org/debian bullseye/main amd64 python3-imagesize all 1.2.0-2 [5824 B] Get: 130 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 131 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get: 132 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 133 http://deb.debian.org/debian bullseye/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get: 134 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get: 135 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get: 136 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get: 137 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 138 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 139 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3 [445 kB] Get: 140 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get: 141 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get: 142 http://deb.debian.org/debian bullseye/main amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3287 kB] Get: 143 http://deb.debian.org/debian bullseye/main amd64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 144 http://deb.debian.org/debian bullseye/main amd64 python3-wheel all 0.34.2-1 [24.0 kB] Get: 145 http://deb.debian.org/debian bullseye/main amd64 python3-parasail all 1.2.3-1 [36.8 kB] Get: 146 http://deb.debian.org/debian bullseye/main amd64 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 147 http://deb.debian.org/debian bullseye/main amd64 python3-ply all 3.11-4 [65.5 kB] Get: 148 http://deb.debian.org/debian bullseye/main amd64 python3-psutil amd64 5.8.0-1 [184 kB] Get: 149 http://deb.debian.org/debian bullseye/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get: 150 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 151 http://deb.debian.org/debian bullseye/main amd64 python3-toml all 0.10.1-1 [15.9 kB] Get: 152 http://deb.debian.org/debian bullseye/main amd64 python3-pytest all 6.0.2-2 [211 kB] Get: 153 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-arraydiff all 0.3-1 [9132 B] Get: 154 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-cov all 2.10.1-1 [23.5 kB] Get: 155 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-doctestplus all 0.9.0-1 [19.2 kB] Get: 156 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-forked all 1.3.0-1 [7432 B] Get: 157 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-mock all 1.10.4-4 [18.6 kB] Get: 158 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-openfiles all 0.5.0-2 [7756 B] Get: 159 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-remotedata all 0.3.2-1 [8972 B] Get: 160 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-timeout all 1.4.1-1 [16.7 kB] Get: 161 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-xdist all 2.2.0-1 [43.5 kB] Get: 162 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 163 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 164 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get: 165 http://deb.debian.org/debian bullseye/main amd64 python3-tk amd64 3.9.2-1 [101 kB] Get: 166 http://deb.debian.org/debian bullseye/main amd64 python3-seaborn all 0.11.1-1 [206 kB] Get: 167 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get: 168 http://deb.debian.org/debian bullseye/main amd64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get: 169 http://deb.debian.org/debian bullseye/main amd64 sphinx-common all 3.4.3-2 [578 kB] Get: 170 http://deb.debian.org/debian bullseye/main amd64 python3-sphinx all 3.4.3-2 [545 kB] Get: 171 http://deb.debian.org/debian bullseye/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get: 172 http://deb.debian.org/debian bullseye/main amd64 python3-sphinx-argparse all 0.2.5-1 [35.9 kB] Get: 173 http://deb.debian.org/debian bullseye/main amd64 python3-sphinx-rtd-theme all 0.5.1+dfsg-1 [20.9 kB] Get: 174 http://deb.debian.org/debian bullseye/main amd64 python3-tqdm all 4.57.0-2 [93.2 kB] Get: 175 http://deb.debian.org/debian bullseye/main amd64 xonsh all 0.9.25+dfsg-1 [401 kB] Fetched 83.2 MB in 4s (22.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... 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Selecting previously unselected package xonsh. Preparing to unpack .../153-xonsh_0.9.25+dfsg-1_all.deb ... Unpacking xonsh (0.9.25+dfsg-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up fonts-lato (2.0-2.1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-1.1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up libparasail3:amd64 (2.4.3+dfsg-2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libtcl8.6:amd64 (8.6.11+dfsg-1) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:amd64 (0.6.1-2.1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up sgml-base (1.30) ... Setting up libtiff5:amd64 (4.2.0-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1k-1+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up libparasail-dev:amd64 (2.4.3+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1) ... Setting up libjs-jquery-metadata (12-3) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up ucf (3.0043) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-1) ... Setting up groff-base (1.22.4-6) ... Setting up xml-core (0.18+nmu1) ... Setting up libx11-6:amd64 (2:1.7.2-1) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up sphinx-common (3.4.3-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-sortedcontainers (2.1.0-2) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-wheel (0.34.2-1) ... Setting up python3-psutil (5.8.0-1) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3) ... Setting up python3-roman (2.0.0-5) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-apipkg (1.5-7) ... Setting up python3-edlib (1.2.6-1) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-alabaster (0.7.8-1.1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-hypothesis (5.43.3-1) ... Setting up python3-ply (3.11-4) ... Setting up python3-tqdm (4.57.0-2) ... Setting up python3-all (3.9.2-3) ... Setting up python3-coverage (5.1+dfsg.1-2+b2) ... Setting up python3-tk:amd64 (3.9.2-1) ... Setting up python3-nose2 (0.9.2-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-execnet (1.7.1-4) ... Setting up xonsh (0.9.25+dfsg-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-cov-core (1.15.0-3) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up python3-parasail (1.2.3-1) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Setting up python3-seaborn (0.11.1-1) ... Setting up python3-pytest-cov (2.10.1-1) ... Setting up python3-pytest-arraydiff (0.3-1) ... Setting up python3-pytest-forked (1.3.0-1) ... Setting up python3-pytest-remotedata (0.3.2-1) ... Setting up python3-pytest-doctestplus (0.9.0-1) ... Setting up python3-pytest-mock (1.10.4-4) ... Setting up python3-pytest-openfiles (0.5.0-2) ... Setting up python3-pytest-xdist (2.2.0-1) ... Setting up python3-pytest-timeout (1.4.1-1) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (3.4.3-2) ... Setting up python3-sphinx-rtd-theme (0.5.1+dfsg-1) ... Setting up python3-sphinx-argparse (0.2.5-1) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pychopper-2.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pychopper_2.5.0-1_source.changes dpkg-buildpackage: info: source package pychopper dpkg-buildpackage: info: source version 2.5.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pychopper-2.5.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pychopper-2.5.0' dh_auto_clean install -d /build/pychopper-2.5.0/debian/.debhelper/generated/_source/home pybuild --clean --test-pytest -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -rf .pytest_cache .pybuild make clean make[2]: Entering directory '/build/pychopper-2.5.0' rm -fr build/ rm -fr dist/ rm -fr .eggs/ find . -name '*.egg-info' -exec rm -fr {} + find . -name '*.egg' -exec rm -f {} + find . -name '*.pyc' -exec rm -f {} + find . -name '*.pyo' -exec rm -f {} + find . -name '*~' -exec rm -f {} + find . -name '__pycache__' -exec rm -fr {} + rm -f .coverage rm -fr htmlcov/ make[2]: Leaving directory '/build/pychopper-2.5.0' cd docs && make clean # fails make[2]: Entering directory '/build/pychopper-2.5.0/docs' rm -rf _build/* rm -f pychopper.rst rm -f modules.rst make[2]: Leaving directory '/build/pychopper-2.5.0/docs' rm -f docs/cmd_list.rst docs/pychopper.phmm_data.rst docs/pychopper.primer_data.rst docs/pychopper.tests.rst rm -f cdna_classifier_report.pdf cdna_classifier_report.tsv make[1]: Leaving directory '/build/pychopper-2.5.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-pychopper.substvars debian/files rm -fr -- debian/python3-pychopper/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild install -d /build/pychopper-2.5.0/debian/.debhelper/generated/_source/home pybuild --configure --test-pytest -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/pychopper-2.5.0' dh_auto_build pybuild --build --test-pytest -i python{version} -p 3.9 I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/utils.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/seq_utils.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/report.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/parasail_backend.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/hmmer_backend.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/edlib_backend.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/common_structures.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/chopper.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/alignment_hits.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/__init__.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper creating /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/__init__.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data creating /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data copying pychopper/primer_data/__init__.py -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data running egg_info creating pychopper.egg-info writing pychopper.egg-info/PKG-INFO writing dependency_links to pychopper.egg-info/dependency_links.txt writing requirements to pychopper.egg-info/requires.txt writing top-level names to pychopper.egg-info/top_level.txt writing manifest file 'pychopper.egg-info/SOURCES.txt' reading manifest file 'pychopper.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: manifest_maker: MANIFEST.in, line 8: unknown action 'rerursive-include' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'rerursive-include' warning: no files found matching '*.jpg' under directory 'docs' warning: no files found matching '*.png' under directory 'docs' warning: no files found matching '*.gif' under directory 'docs' writing manifest file 'pychopper.egg-info/SOURCES.txt' copying pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data copying pychopper/primer_data/PCS110_primers.fas -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3p -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3f -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm -> /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data running build_scripts creating build creating build/scripts-3.9 copying and adjusting scripts/cdna_classifier.py -> build/scripts-3.9 changing mode of build/scripts-3.9/cdna_classifier.py from 644 to 755 cd docs && PYTHONPATH=.. make man make[2]: Entering directory '/build/pychopper-2.5.0/docs' sphinx-build -b man -d _build/doctrees . _build/man Running Sphinx v3.4.3 /build/pychopper-2.5.0/docs/./cmd_tools.py:10: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp Found following scripts: /build/pychopper-2.5.0/docs/.. /build/pychopper-2.5.0/docs/../scripts ['cdna_classifier.py'] Matplotlib created a temporary config/cache directory at /tmp/matplotlib-0s4ibw88 because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. Creating file ./pychopper.rst. Creating file ./pychopper.phmm_data.rst. Creating file ./pychopper.primer_data.rst. Creating file ./pychopper.tests.rst. Creating file ./modules.rst. making output directory... done building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] cmd_list Matplotlib created a temporary config/cache directory at /tmp/matplotlib-shxyie23 because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. reading sources... [ 28%] index reading sources... [ 42%] modules reading sources... [ 57%] pychopper reading sources... [ 71%] pychopper.phmm_data reading sources... [ 85%] pychopper.primer_data reading sources... [100%] pychopper.tests looking for now-outdated files... none found pickling environment... done checking consistency... done writing... pychopper.1 { cmd_list modules pychopper pychopper.phmm_data pychopper.primer_data pychopper.tests } done build succeeded. The manual pages are in _build/man. Build finished. The manual pages are in _build/man. make[2]: Leaving directory '/build/pychopper-2.5.0/docs' make[1]: Leaving directory '/build/pychopper-2.5.0' rm -f debian/python3-pychopper.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/pychopper-2.5.0' dh_auto_test -- --system=custom --test-args="PYTHONPATH={build_dir} {interpreter} -m pytest -v" pybuild --test --test-pytest -i python{version} -p 3.9 --system=custom "--test-args=PYTHONPATH={build_dir} {interpreter} -m pytest -v" I: pybuild base:232: PYTHONPATH=/build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build python3.9 -m pytest -v /usr/lib/python3/dist-packages/_pytest/compat.py:340: PytestDeprecationWarning: The TerminalReporter.writer attribute is deprecated, use TerminalReporter._tw instead at your own risk. See https://docs.pytest.org/en/stable/deprecations.html#terminalreporter-writer for more information. return getattr(object, name, default) ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.9 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/build/pychopper-2.5.0/.hypothesis/examples') rootdir: /build/pychopper-2.5.0, configfile: pytest.ini, testpaths: pychopper plugins: xonsh-0.9.25, xdist-2.2.0, timeout-1.4.1, remotedata-0.3.2, openfiles-0.5.0, mock-1.10.4, forked-1.3.0, doctestplus-0.9.0, cov-2.10.1, arraydiff-0.3, hypothesis-5.43.3 collecting ... collected 3 items pychopper/tests/test_detector.py::TestDetector::testPairAlign PASSED [ 33%] pychopper/tests/test_detector.py::TestDetector::testScoreCutoff PASSED [ 66%] pychopper/tests/test_regression_simple.py::TestIntegration::testIntegration PASSED [100%] ============================== 3 passed in 7.51s =============================== rm -fr -- /tmp/dh-xdg-rundir-pHeTq2G1 make[1]: Leaving directory '/build/pychopper-2.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-pychopper.substvars rm -fr -- debian/.debhelper/generated/python3-pychopper/ debian/python3-pychopper/ debian/tmp/ rm -f debian/python3-pychopper.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/pychopper-2.5.0' dh_auto_install install -d /build/pychopper-2.5.0/debian/python3-pychopper pybuild --install --test-pytest -i python{version} -p 3.9 --dest-dir /build/pychopper-2.5.0/debian/python3-pychopper I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/pychopper-2.5.0/debian/python3-pychopper running install running build running build_py running egg_info writing pychopper.egg-info/PKG-INFO writing dependency_links to pychopper.egg-info/dependency_links.txt writing requirements to pychopper.egg-info/requires.txt writing top-level names to pychopper.egg-info/top_level.txt reading manifest file 'pychopper.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: manifest_maker: MANIFEST.in, line 8: unknown action 'rerursive-include' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'rerursive-include' warning: no files found matching '*.jpg' under directory 'docs' warning: no files found matching '*.png' under directory 'docs' warning: no files found matching '*.gif' under directory 'docs' writing manifest file 'pychopper.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/pychopper-2.5.0/debian/python3-pychopper/usr creating /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib creating /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9 creating /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages creating /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper creating /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/report.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/alignment_hits.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/parasail_backend.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/edlib_backend.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/hmmer_backend.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/chopper.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/utils.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/common_structures.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/seq_utils.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/__init__.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ creating /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data creating /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data/__pycache__/__init__.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data/PCS110_primers.fas -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data/__init__.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data creating /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data creating /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/__pycache__/__init__.cpython-39.pyc -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data/__pycache__ copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3f -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3p -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/__init__.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__init__.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/alignment_hits.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/chopper.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/common_structures.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/edlib_backend.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/hmmer_backend.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/parasail_backend.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/report.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/seq_utils.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/utils.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/alignment_hits.py to alignment_hits.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/chopper.py to chopper.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/common_structures.py to common_structures.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/edlib_backend.py to edlib_backend.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/hmmer_backend.py to hmmer_backend.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/parasail_backend.py to parasail_backend.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/report.py to report.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/seq_utils.py to seq_utils.cpython-39.pyc byte-compiling /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/utils.py to utils.cpython-39.pyc running install_egg_info Copying pychopper.egg-info to /build/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper-2.5.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/pychopper-2.5.0/debian/python3-pychopper/usr/bin copying build/scripts-3.9/cdna_classifier.py -> /build/pychopper-2.5.0/debian/python3-pychopper/usr/bin changing mode of /build/pychopper-2.5.0/debian/python3-pychopper/usr/bin/cdna_classifier.py to 755 find debian/python3-pychopper -name .gitignore -delete make[1]: Leaving directory '/build/pychopper-2.5.0' dh_installdocs -O--buildsystem=pybuild install -d debian/python3-pychopper/usr/share/doc/python3-pychopper install -d debian/.debhelper/generated/python3-pychopper install -p -m0644 debian/copyright debian/python3-pychopper/usr/share/doc/python3-pychopper/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-pychopper/usr/share/doc/python3-pychopper/changelog.Debian dh_installman -O--buildsystem=pybuild install -d debian/python3-pychopper/usr/share/man/man1/ install -p -m0644 ./docs/_build/man/pychopper.1 debian/python3-pychopper/usr/share/man/man1/pychopper.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-pychopper/usr/share/man/man1/pychopper.1 mv debian/python3-pychopper/usr/share/man/man1/pychopper.1.dh-new debian/python3-pychopper/usr/share/man/man1/pychopper.1 chmod 0644 -- debian/python3-pychopper/usr/share/man/man1/pychopper.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:152: source=pychopper, binary packages=['python3-pychopper'] D: dh_python3 dh_python3:183: processing package python3-pychopper... D: dh_python3 fs:49: moving files from debian/python3-pychopper/usr/lib/python3.9/dist-packages to debian/python3-pychopper/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-pychopper details = {'requires.txt': {'debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper-2.5.0.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-pychopper D: dh_python3 pydist:142: trying to find dependency for edlib (python=None) D: dh_python3 pydist:142: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:142: trying to find dependency for pandas (python=None) D: dh_python3 pydist:142: trying to find dependency for parasail (python=None) D: dh_python3 pydist:142: trying to find dependency for pytest (python=None) D: dh_python3 pydist:142: trying to find dependency for seaborn (python=None) D: dh_python3 pydist:142: trying to find dependency for six (python=None) D: dh_python3 pydist:142: trying to find dependency for sphinx (python=None) D: dh_python3 pydist:142: trying to find dependency for sphinx_rtd_theme (python=None) D: dh_python3 pydist:142: trying to find dependency for tqdm (python=None) D: dh_python3 depends:275: D={'python3-seaborn', 'python3-parasail', 'python3-edlib', 'python3-sphinx', 'python3:any', 'python3-pandas', 'python3-matplotlib', 'python3-six', 'python3-pytest', 'python3-tqdm', 'python3-sphinx-rtd-theme'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -d debian/python3-pychopper/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/python3-pychopper/usr/share/lintian/overrides/python3-pychopper dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/python3-pychopper chmod a-x usr/share/doc/python3-pychopper/changelog.Debian usr/share/man/man1/pychopper.1 gzip -9nf usr/share/doc/python3-pychopper/changelog.Debian usr/share/man/man1/pychopper.1 cd '/build/pychopper-2.5.0' dh_fixperms -O--buildsystem=pybuild find debian/python3-pychopper ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-pychopper/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-pychopper/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-pychopper/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-pychopper/usr/share/man debian/python3-pychopper/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-pychopper -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-pychopper/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-pychopper/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -d debian/python3-pychopper/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-pychopper/DEBIAN/postinst cat debian/python3-pychopper.postinst.debhelper >> debian/python3-pychopper/DEBIAN/postinst chmod 0755 -- debian/python3-pychopper/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-pychopper/DEBIAN/prerm cat debian/python3-pychopper.prerm.debhelper >> debian/python3-pychopper/DEBIAN/prerm chmod 0755 -- debian/python3-pychopper/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-pychopper.substvars echo misc:Pre-Depends= >> debian/python3-pychopper.substvars dpkg-gencontrol -ppython3-pychopper -ldebian/changelog -Tdebian/python3-pychopper.substvars -Pdebian/python3-pychopper chmod 0644 -- debian/python3-pychopper/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/python3-pychopper >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-pychopper/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-pychopper .. dpkg-deb: building package 'python3-pychopper' in '../python3-pychopper_2.5.0-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pychopper_2.5.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pychopper-2.5.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/139262 and its subdirectories I: Current time: Wed Nov 30 15:47:26 -12 2022 I: pbuilder-time-stamp: 1669866446 Thu Oct 28 21:24:25 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Oct 28 21:24:25 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Oct 28 21:26:22 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Oct 28 21:26:22 UTC 2021 I: pychopper_2.5.0-1_amd64.changes: Format: 1.8 Date: Mon, 26 Oct 2020 19:07:36 +0530 Source: pychopper Binary: python3-pychopper Architecture: all Version: 2.5.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-pychopper - identify, orient and trim full-length Nanopore cDNA reads Changes: pychopper (2.5.0-1) unstable; urgency=medium . * Team upload. * New upstream version Checksums-Sha1: 1a3628d60bbc299700d5bb3294f9478b69e13174 9360 pychopper_2.5.0-1_amd64.buildinfo 969feeaed9eb04b48e13ae44c2d2770895aeba97 120876 python3-pychopper_2.5.0-1_all.deb Checksums-Sha256: 01b97b74f97a6d225aea14e2801d66e2b9ec2b8a4f6bf055410bfc61d8a3f08f 9360 pychopper_2.5.0-1_amd64.buildinfo a5c2928acdae982625e6020d04f1cfae9bc1a7359ca43efb0b763cbd297f51c4 120876 python3-pychopper_2.5.0-1_all.deb Files: 828c4b1c8d05bc8cb52aa4f6d4b95321 9360 science optional pychopper_2.5.0-1_amd64.buildinfo 0e56710534a50d13dff6f4e54123dc86 120876 python optional python3-pychopper_2.5.0-1_all.deb Thu Oct 28 21:26:25 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.yBQGNvyeV9/pychopper_2.5.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.yBQGNvyeV9/pychopper_2.5.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.yBQGNvyeV9/pychopper_2.5.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.yBQGNvyeV9/b1/pychopper_2.5.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.yBQGNvyeV9/b2/pychopper_2.5.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 5.430s) 5.430s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.568s) 0.567s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Oct 28 21:28:02 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Thu Oct 28 21:28:02 UTC 2021 I: pychopper from bullseye built successfully and reproducibly on amd64. Thu Oct 28 21:28:05 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Oct 28 21:28:05 UTC 2021 I: Submitting 12K b1/pychopper_2.5.0-1_amd64.buildinfo.asc Thu Oct 28 21:28:07 UTC 2021 I: Submitting 12K b2/pychopper_2.5.0-1_amd64.buildinfo.asc Thu Oct 28 21:28:12 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Oct 28 21:28:12 UTC 2021 I: Done submitting .buildinfo files. Thu Oct 28 21:28:12 UTC 2021 I: Removing signed pychopper_2.5.0-1_amd64.buildinfo.asc files: removed './b1/pychopper_2.5.0-1_amd64.buildinfo.asc' removed './b2/pychopper_2.5.0-1_amd64.buildinfo.asc'