Thu Dec 30 21:23:21 UTC 2021 I: starting to build physamp/bullseye/amd64 on jenkins on '2021-12-30 21:23' Thu Dec 30 21:23:21 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_18/53350/console.log Thu Dec 30 21:23:21 UTC 2021 I: Downloading source for bullseye/physamp=1.1.0-2 --2021-12-30 21:23:22-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/physamp/physamp_1.1.0-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2037 (2.0K) Saving to: ‘physamp_1.1.0-2.dsc’ 0K . 100% 105M=0s 2021-12-30 21:23:22 (105 MB/s) - ‘physamp_1.1.0-2.dsc’ saved [2037/2037] Thu Dec 30 21:23:22 UTC 2021 I: physamp_1.1.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: physamp Binary: physamp Architecture: any Version: 1.1.0-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Julien Dutheil Homepage: https://jydu.github.io/physamp/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/physamp Vcs-Git: https://salsa.debian.org/med-team/physamp.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev (>= 2.4.1) Package-List: physamp deb science optional arch=any Checksums-Sha1: 3ff8524b2bcf0be31ff60857253cdabce2677b90 241845 physamp_1.1.0.orig.tar.gz e4693eb8214ccb361772594c6f1d7826be27b888 3788 physamp_1.1.0-2.debian.tar.xz Checksums-Sha256: 0c687e7f46d6d5732a3ad6f029a0169667921101294a9fb5efaae9adfc397ae8 241845 physamp_1.1.0.orig.tar.gz 1e1a0ad507be21ba303899faabc1fc0b7fe178d5cbb29b6914e9758b27fcfce6 3788 physamp_1.1.0-2.debian.tar.xz Files: 70c3d25a3ab2c937495c502a4dbddcdd 241845 physamp_1.1.0.orig.tar.gz 3fab5c3cf74862b672b5151f7f11a994 3788 physamp_1.1.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+b7EIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEUWBAAhSUTRVnocZjYV4lx95WCOYh1qBcZT6sG /umz01ZgY5dsjzeN55xhzD9YpmfqrTYeH1tEh4QkD8qNMH1hDef+MKABGe0KELwL cqnk343NjfKwv6yg1MHAmsGk3vetq0irNQrimQ+m860bEVZBxZ+cOxyt7cRvkNdS HjVCxuL2eYqweqgAXSYtZPEhndsCD4IA4HjVljsQBjAqWWbgRb/AKNNRDbf2Rm9m w45EqCF/IDG4SQrbSrC2cg+/s+NihVRAYBnibiWoWUdGh9E/mwUHZzPUlYpOHM38 EVarYDA1vRIa9SQP1lW4PO02+3B4lJ+n2klkoHeQ1rJwSWP75jSsnbcTgxuIiYGW +NFeL/Wn3Zb4EwSbI3RqSl4XdZ5E31sderk6OytUKhoal1oja69OUj0qF5gSQkOO tP83FNIuPHKWhc+o1fRYdeAhkz6t8x7THVRoggAdhKA6y72yDhkqEDj5qW2lqPCx wzZEAkKWnAHzE0HCp/j24GWuB+hJlZf6rer55m/P5/2yLZGobVqeDjvzbvkqh3rc 4hG1T2Lpu8mptZSttGk/sDTpEp9gPpDwylbxBZ8fauY95MpjVMw6ZMSCdDS3yYbv R+PnQTme8Jz9ViWMvooZ6UI6n/OsGJ6KJQM4Zdp2nCbl14ga/6HvVbNIpTvvlHh9 pKXyP6wwccw= =JEXy -----END PGP SIGNATURE----- Thu Dec 30 21:23:22 UTC 2021 I: Checking whether the package is not for us Thu Dec 30 21:23:22 UTC 2021 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu Dec 30 21:23:23 UTC 2021 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu Dec 30 21:25:26 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Feb 1 15:46:25 -12 2023 I: pbuilder-time-stamp: 1675309585 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [physamp_1.1.0-2.dsc] I: copying [./physamp_1.1.0.orig.tar.gz] I: copying [./physamp_1.1.0-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.KT4EkAj8/trustedkeys.kbx': General error gpgv: Signature made Thu Oct 29 22:34:42 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./physamp_1.1.0-2.dsc dpkg-source: info: extracting physamp in physamp-1.1.0 dpkg-source: info: unpacking physamp_1.1.0.orig.tar.gz dpkg-source: info: unpacking physamp_1.1.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9549/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b62629b4215f4082aba76d026c935431' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9549' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7Ag2P8PZsx/pbuilderrc_svfu --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7Ag2P8PZsx/b1 --logfile b1/build.log physamp_1.1.0-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 23 03:47 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/9549/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev (>= 2.4.1) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-dev (>= 2.4.1); however: Package libbpp-phyl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbpp-core-dev{a} libbpp-core4{a} libbpp-phyl-dev{a} libbpp-phyl12{a} libbpp-seq-dev{a} libbpp-seq12{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtext-unidecode-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 38.2 MB of archives. After unpacking 196 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 tex-common all 6.16 [53.7 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libbpp-core4 amd64 2.4.1-5 [596 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libbpp-core-dev amd64 2.4.1-5 [926 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libbpp-seq12 amd64 2.4.1-5 [500 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libbpp-phyl12 amd64 2.4.1-4 [1631 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libbpp-seq-dev amd64 2.4.1-5 [733 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libbpp-phyl-dev amd64 2.4.1-4 [2961 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libtext-unidecode-perl all 1.30-1 [103 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 texinfo amd64 6.7.0.dfsg.2-6 [1761 kB] Fetched 38.2 MB in 1s (68.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... 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Unpacking libxml-libxml-perl (2.0134+dfsg-2+b1) ... Selecting previously unselected package texinfo. Preparing to unpack .../63-texinfo_6.7.0.dfsg.2-6_amd64.deb ... Unpacking texinfo (6.7.0.dfsg.2-6) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:amd64 (1.40.0-2) ... Setting up libbpp-core4:amd64 (2.4.1-5) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:amd64 (1.4.1-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libbpp-seq12:amd64 (2.4.1-5) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libbpp-phyl12:amd64 (2.4.1-4) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2+b1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libbpp-core-dev (2.4.1-5) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-autoreconf (20) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libbpp-phyl-dev:amd64 (2.4.1-4) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.18.4-2+deb11u1) ... Setting up debhelper (13.3.4) ... Setting up texinfo (6.7.0.dfsg.2-6) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/physamp-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../physamp_1.1.0-2_source.changes dpkg-buildpackage: info: source package physamp dpkg-buildpackage: info: source version 1.1.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/physamp-1.1.0' dh_auto_configure -- -DCMAKE_BUILD_TYPE=RelWithDebInfo cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=RelWithDebInfo .. -- The CXX compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- Found makeinfo as '/usr/bin/makeinfo': 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/physamp-1.1.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/physamp-1.1.0' dh_auto_build cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/physamp-1.1.0 -B/build/physamp-1.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/physamp-1.1.0/obj-x86_64-linux-gnu/CMakeFiles /build/physamp-1.1.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/depend make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/depend make[3]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/physamp-1.1.0 /build/physamp-1.1.0/physamp /build/physamp-1.1.0/obj-x86_64-linux-gnu /build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp /build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppphysamp.dir/DependInfo.cmake --color= make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/depend make[3]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/physamp-1.1.0 /build/physamp-1.1.0/physamp /build/physamp-1.1.0/obj-x86_64-linux-gnu /build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp /build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppalnoptim.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/physamp-1.1.0 /build/physamp-1.1.0/docs /build/physamp-1.1.0/obj-x86_64-linux-gnu /build/physamp-1.1.0/obj-x86_64-linux-gnu/docs /build/physamp-1.1.0/obj-x86_64-linux-gnu/docs/CMakeFiles/info.dir/DependInfo.cmake --color= make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/physamp-1.1.0 /build/physamp-1.1.0/man /build/physamp-1.1.0/obj-x86_64-linux-gnu /build/physamp-1.1.0/obj-x86_64-linux-gnu/man /build/physamp-1.1.0/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake --color= Dependee "/build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppphysamp.dir/DependInfo.cmake" is newer than depender "/build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppphysamp.dir/depend.internal". Dependee "/build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppphysamp.dir/depend.internal". Scanning dependencies of target bppphysamp Dependee "/build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppalnoptim.dir/DependInfo.cmake" is newer than depender "/build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppalnoptim.dir/depend.internal". Dependee "/build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppalnoptim.dir/depend.internal". Scanning dependencies of target bppalnoptim make[3]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/build make[3]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/build make[3]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' Dependee "/build/physamp-1.1.0/obj-x86_64-linux-gnu/docs/CMakeFiles/info.dir/DependInfo.cmake" is newer than depender "/build/physamp-1.1.0/obj-x86_64-linux-gnu/docs/CMakeFiles/info.dir/depend.internal". Dependee "/build/physamp-1.1.0/obj-x86_64-linux-gnu/docs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/physamp-1.1.0/obj-x86_64-linux-gnu/docs/CMakeFiles/info.dir/depend.internal". Scanning dependencies of target info make[3]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/build make[3]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' Dependee "/build/physamp-1.1.0/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake" is newer than depender "/build/physamp-1.1.0/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/depend.internal". Dependee "/build/physamp-1.1.0/obj-x86_64-linux-gnu/man/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/physamp-1.1.0/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/depend.internal". Scanning dependencies of target man make[3]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build [ 12%] Generating info page make[3]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/physamp-1.1.0/obj-x86_64-linux-gnu/docs && /usr/bin/makeinfo --no-split -o /build/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info /build/physamp-1.1.0/docs/physamp.texi [ 25%] Building CXX object physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o cd /build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/physamp-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -c /build/physamp-1.1.0/physamp/AlignmentOptimizer.cpp [ 37%] Building CXX object physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o cd /build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/physamp-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -c /build/physamp-1.1.0/physamp/PhyloSampler.cpp [ 50%] Compressing manpage bppalnoptim.1 [ 62%] Compressing manpage bppphysamp.1 cd /build/physamp-1.1.0/obj-x86_64-linux-gnu/man && /bin/gzip -c9n /build/physamp-1.1.0/man/bppalnoptim.1 > /build/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppalnoptim.1.gz cd /build/physamp-1.1.0/obj-x86_64-linux-gnu/man && /bin/gzip -c9n /build/physamp-1.1.0/man/bppphysamp.1 > /build/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppphysamp.1.gz make[3]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' [ 62%] Built target man [ 75%] Compressing info page cd /build/physamp-1.1.0/obj-x86_64-linux-gnu/docs && /bin/gzip -c9n /build/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info > /build/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info.gz make[3]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' [ 75%] Built target info [ 87%] Linking CXX executable bppphysamp cd /build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppphysamp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/physamp-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -o bppphysamp /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' [ 87%] Built target bppphysamp [100%] Linking CXX executable bppalnoptim cd /build/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnoptim.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/physamp-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -o bppalnoptim /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' [100%] Built target bppalnoptim make[2]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/physamp-1.1.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/physamp-1.1.0/debian/physamp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/physamp-1.1.0 -B/build/physamp-1.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/physamp-1.1.0/debian/physamp/usr/bin/bppalnoptim -- Installing: /build/physamp-1.1.0/debian/physamp/usr/bin/bppphysamp -- Installing: /build/physamp-1.1.0/debian/physamp/usr/share/info/physamp.info.gz -- Installing: /build/physamp-1.1.0/debian/physamp/usr/share/man/man1/bppalnoptim.1.gz -- Installing: /build/physamp-1.1.0/debian/physamp/usr/share/man/man1/bppphysamp.1.gz make[1]: Leaving directory '/build/physamp-1.1.0/obj-x86_64-linux-gnu' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'physamp' in '../physamp_1.1.0-2_amd64.deb'. dpkg-deb: building package 'physamp-dbgsym' in '../physamp-dbgsym_1.1.0-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../physamp_1.1.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9549 and its subdirectories I: Current time: Wed Feb 1 15:48:26 -12 2023 I: pbuilder-time-stamp: 1675309706 Thu Dec 30 21:25:26 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Thu Dec 30 21:25:26 UTC 2021 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Thu Dec 30 21:27:02 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Thu Dec 30 21:27:02 UTC 2021 I: physamp_1.1.0-2_amd64.changes: Format: 1.8 Date: Fri, 30 Oct 2020 11:29:32 +0100 Source: physamp Binary: physamp physamp-dbgsym Architecture: amd64 Version: 1.1.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: physamp - sample sequence alignment corresponding to phylogeny Changes: physamp (1.1.0-2) unstable; urgency=medium . [ Julien Dutheil ] * Builds against Bio++ 2.4.1. . [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: dccfe6c10af627cc4c389f3c870f6ccd3d40f814 1238004 physamp-dbgsym_1.1.0-2_amd64.deb e8a2c7dccc0744c4d35af114fa44ce3433ca02eb 6230 physamp_1.1.0-2_amd64.buildinfo 87858edb666573e11e22b1ca0a011b2ce7f85600 187388 physamp_1.1.0-2_amd64.deb Checksums-Sha256: d43ce771a8ac7eea089f0decd00c4dfb39d8aebf180aeff0d0562892e74270ab 1238004 physamp-dbgsym_1.1.0-2_amd64.deb cc746151a10c75ba4bb40e9c9b46bc41fea955c775ceac42566dca28798b27c4 6230 physamp_1.1.0-2_amd64.buildinfo ddda2d70e0624fce1756b1496c0f87135bf13850ef4cd47d82a6da83e3c70b13 187388 physamp_1.1.0-2_amd64.deb Files: 5a6d5d5086daf7fcba6a04ae0c73fc28 1238004 debug optional physamp-dbgsym_1.1.0-2_amd64.deb 95e741cd16fb56dc25369e6c167d21d8 6230 science optional physamp_1.1.0-2_amd64.buildinfo 42ebbc385af6e6bd9499e80117ee5052 187388 science optional physamp_1.1.0-2_amd64.deb Thu Dec 30 21:27:11 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.7Ag2P8PZsx/physamp_1.1.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.7Ag2P8PZsx/physamp_1.1.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.7Ag2P8PZsx/physamp_1.1.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.7Ag2P8PZsx/b1/physamp_1.1.0-2_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.7Ag2P8PZsx/b2/physamp_1.1.0-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.315s) 1.315s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.042s) 0.042s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Dec 30 21:29:00 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Thu Dec 30 21:29:00 UTC 2021 I: physamp from bullseye built successfully and reproducibly on amd64. Thu Dec 30 21:29:10 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Dec 30 21:29:10 UTC 2021 I: Submitting 8.0K b1/physamp_1.1.0-2_amd64.buildinfo.asc Thu Dec 30 21:29:14 UTC 2021 I: Submitting 8.0K b2/physamp_1.1.0-2_amd64.buildinfo.asc Thu Dec 30 21:29:24 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Dec 30 21:29:24 UTC 2021 I: Done submitting .buildinfo files. Thu Dec 30 21:29:24 UTC 2021 I: Removing signed physamp_1.1.0-2_amd64.buildinfo.asc files: removed './b1/physamp_1.1.0-2_amd64.buildinfo.asc' removed './b2/physamp_1.1.0-2_amd64.buildinfo.asc'