Thu Jan 13 22:22:37 UTC 2022 I: starting to build mosdepth/bullseye/amd64 on jenkins on '2022-01-13 22:22' Thu Jan 13 22:22:37 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_7/90986/console.log Thu Jan 13 22:22:37 UTC 2022 I: Downloading source for bullseye/mosdepth=0.3.1+ds-2 --2022-01-13 22:22:37-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/mosdepth/mosdepth_0.3.1%2bds-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2220 (2.2K) Saving to: ‘mosdepth_0.3.1+ds-2.dsc’ 0K .. 100% 260M=0s 2022-01-13 22:22:37 (260 MB/s) - ‘mosdepth_0.3.1+ds-2.dsc’ saved [2220/2220] Thu Jan 13 22:22:37 UTC 2022 I: mosdepth_0.3.1+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mosdepth Binary: mosdepth, mosdepth-examples Architecture: any all Version: 0.3.1+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra Homepage: https://github.com/brentp/mosdepth Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/mosdepth Vcs-Git: https://salsa.debian.org/med-team/mosdepth.git Testsuite: autopkgtest Testsuite-Triggers: libhts-dev, python3 Build-Depends: debhelper-compat (= 13), nim, nim-docopt-dev, nim-regex-dev, nim-hts-dev, help2man, samtools, libhts-dev Package-List: mosdepth deb science optional arch=any mosdepth-examples deb science optional arch=all Checksums-Sha1: 56f821c4eda127cc142e79b5c0cb8069b45067cb 24496 mosdepth_0.3.1+ds.orig.tar.xz 8cd6f0671cd53ac3b7c40f90c5d7eb3c7008b8f5 715940 mosdepth_0.3.1+ds-2.debian.tar.xz Checksums-Sha256: 9412e6611fef8ca55e9296f84b3c2c26fc00470e618314ad3c22b17297510dfa 24496 mosdepth_0.3.1+ds.orig.tar.xz a8e8fb67b18a334434c840e23ef1ef329a231885050b1ac874147e60483e37ef 715940 mosdepth_0.3.1+ds-2.debian.tar.xz Files: 2f6321451cb912103d882eef6770d125 24496 mosdepth_0.3.1+ds.orig.tar.xz efbda279cb028fa53f0885bacbbb8204 715940 mosdepth_0.3.1+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl+xXYEUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGZ1BAAhZLP1mONmgD5CQhur2Pbu19eS5RR Lkmc/vEfgUnfn4a50mW2oZpgcXMdwXYqdxOMO6u09dbcN3OlgNlN0neT6ESyisZM GB1P8JkNcWhE4MVe1dmHpYaZ6mwuv+oMARJQfzV46T1nqEytJY6khTDiULjen0mo /Z1Y89Ax4EgGxquMPsGfRLH8FXQmZOGZMG5vtPq5b4yZX46wwzYYt17BccKMVVtD xAechZUqOMKRvrCKdbiroOU8K0wJT6+NE6E46RoJgZZJFMJfuKFuEadjVQI+zfNI efFaO6E0T0DKEBzF3bDidfL2k+WdZv3npXs2tkO/E2aTEwsSHbt7vA80+AJo2JXn GRNso09kcXUqID4zZ6LOcUHZN2zR6EnhPKqRhxe++E+Pr4X5WIK8kf+rEWjPqBJY djLRm7Quh5Eq+tzIMz6y7qiErMC5fXajRz50vh9G5jywwfZBhwk5V0JA4Qb6qRyR h299viGD6iUXviYOi5kcB5BYy3H5AQqc36TofjdNvwa2JJITJ9lPu7jgWcf7/86a cQhGFNiqwrMOzgrO4u8T0ed96KWtbFgaz4Bx8zv+CeEqMuECNpGge8rxVBJochIW FRRdMZdTCpmrzXZpCqyEiFiKfF7KVJyLq+jM18SdusLYStKhE+cYT9TxDqXFaav+ QfMsedAYIj+DkdI= =9EbN -----END PGP SIGNATURE----- Thu Jan 13 22:22:37 UTC 2022 I: Checking whether the package is not for us Thu Jan 13 22:22:37 UTC 2022 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu Jan 13 22:22:37 UTC 2022 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu Jan 13 22:23:41 UTC 2022 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 13 10:22:40 -12 2022 I: pbuilder-time-stamp: 1642112560 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mosdepth_0.3.1+ds-2.dsc] I: copying [./mosdepth_0.3.1+ds.orig.tar.xz] I: copying [./mosdepth_0.3.1+ds-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.Za5Ngixw/trustedkeys.kbx': General error gpgv: Signature made Sun Nov 15 04:55:29 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mosdepth_0.3.1+ds-2.dsc dpkg-source: info: extracting mosdepth in mosdepth-0.3.1+ds dpkg-source: info: unpacking mosdepth_0.3.1+ds.orig.tar.xz dpkg-source: info: unpacking mosdepth_0.3.1+ds-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/197552/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d355a60901444f1ea2560e87f7e40360' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='197552' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Yyw6X3Tzee/pbuilderrc_L8Yl --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Yyw6X3Tzee/b1 --logfile b1/build.log mosdepth_0.3.1+ds-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/197552/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, nim-docopt-dev, nim-regex-dev, nim-hts-dev, help2man, samtools, libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on nim-docopt-dev; however: Package nim-docopt-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-regex-dev; however: Package nim-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-hts-dev; however: Package nim-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libicu67{a} libldap-2.4-2{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} nim{a} nim-docopt-dev{a} nim-hts-dev{a} nim-regex-dev{a} nim-unicodedb-dev{a} nim-unicodeplus-dev{a} po-debconf{a} samtools{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl git libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 29.5 MB of archives. After unpacking 99.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 help2man amd64 1.48.1 [190 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u1 [338 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libcurl4-gnutls-dev amd64 7.74.0-1.3+deb11u1 [429 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libdeflate-dev amd64 1.7-1 [46.9 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 liblzma-dev amd64 5.2.5-2 [229 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libhts-dev amd64 1.11-4 [3858 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 nim amd64 1.4.6+really1.4.2-2 [3293 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 nim-unicodedb-dev all 0.9.0-2 [423 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 nim-unicodeplus-dev all 0.5.1-2 [5340 B] Get: 54 http://deb.debian.org/debian bullseye/main amd64 nim-regex-dev all 0.17.0+ds-2 [41.2 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 nim-docopt-dev all 0.6.8-3 [10.6 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 nim-hts-dev all 0.3.14+ds-1 [35.3 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 samtools amd64 1.11-1 [545 kB] Fetched 29.5 MB in 1s (41.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... 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Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up nim-unicodedb-dev (0.9.0-2) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up liblzma-dev:amd64 (5.2.5-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up nim (1.4.6+really1.4.2-2) ... Setting up libdeflate-dev:amd64 (1.7-1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up nim-unicodeplus-dev (0.5.1-2) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u1) ... Setting up libcurl4-gnutls-dev:amd64 (7.74.0-1.3+deb11u1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.48.1) ... Setting up nim-hts-dev (0.3.14+ds-1) ... Setting up nim-regex-dev (0.17.0+ds-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up nim-docopt-dev (0.6.8-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:amd64 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:amd64 (1.11-4) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up samtools (1.11-1) ... Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/mosdepth-0.3.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mosdepth_0.3.1+ds-2_source.changes dpkg-buildpackage: info: source package mosdepth dpkg-buildpackage: info: source version 0.3.1+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mosdepth-0.3.1+ds' rm -f debian/mosdepth.1 rm -f mosdepth rm -rf nimcache rm -f tests/big.bam.csi rm -f tests/ovl.bam tests/ovl.bam.bai tests/overlapping-pairs.bam.bai tests/overlapping-pairs.bam tests/overlapping-pairs.bam tests/empty-tids.bam.bai tests/empty-tids.bam tests/big.bam tests/nanopore.bam tests/nanopore.bam.bai make[1]: Leaving directory '/build/mosdepth-0.3.1+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/mosdepth-0.3.1+ds' nim c --debuginfo:on -d:release -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/hts --nimcache:/build/mosdepth-0.3.1+ds/nimcache mosdepth.nim Hint: used config file '/etc/nim/nim.cfg' [Conf] Hint: used config file '/etc/nim/config.nims' [Conf] Hint: used config file '/build/mosdepth-0.3.1+ds/nim.cfg' [Conf] .......................................................... /build/mosdepth-0.3.1+ds/mosdepth.nim(370, 9) template/generic instantiation of `add` from here /build/mosdepth-0.3.1+ds/depthstat.nim(21, 24) Warning: See corresponding Defect; IndexError is deprecated [Deprecated] /build/mosdepth-0.3.1+ds/mosdepth.nim(599, 15) Warning: open; wopen_bgzi is deprecated [Deprecated] /build/mosdepth-0.3.1+ds/mosdepth.nim(602, 17) Warning: open; wopen_bgzi is deprecated [Deprecated] /build/mosdepth-0.3.1+ds/mosdepth.nim(605, 19) Warning: open; wopen_bgzi is deprecated [Deprecated] /build/mosdepth-0.3.1+ds/mosdepth.nim(618, 15) Warning: open; wopen_bgzi is deprecated [Deprecated] /build/mosdepth-0.3.1+ds/mosdepth.nim(768, 22) Warning: use fileExists; existsFile is deprecated [Deprecated] /build/mosdepth-0.3.1+ds/mosdepth.nim(542, 6) Hint: 'to_tuples' is declared but not used [XDeclaredButNotUsed] /build/mosdepth-0.3.1+ds/mosdepth.nim(9, 8) Warning: imported and not used: 'strformat' [UnusedImport] /build/mosdepth-0.3.1+ds/mosdepth.nim(11, 8) Warning: imported and not used: 'times' [UnusedImport] CC: stdlib_assertions.nim CC: stdlib_dollars.nim CC: stdlib_io.nim CC: stdlib_system.nim CC: ../../usr/share/nimble/hts/hts/private/hts_concat.nim CC: stdlib_parseutils.nim CC: stdlib_unicode.nim CC: stdlib_math.nim CC: stdlib_algorithm.nim CC: stdlib_strutils.nim CC: stdlib_strformat.nim CC: ../../usr/share/nimble/hts/hts/bam.nim CC: stdlib_sequtils.nim CC: ../../usr/share/nimble/hts/hts/vcf.nim CC: ../../usr/share/nimble/hts/hts/bgzf.nim CC: ../../usr/share/nimble/hts/hts/csi.nim CC: ../../usr/share/nimble/hts/hts/bgzf/bgzi.nim CC: ../../usr/share/nimble/hts/hts.nim CC: stdlib_hashes.nim CC: stdlib_tables.nim CC: int2str.nim CC: stdlib_times.nim CC: stdlib_os.nim CC: stdlib_sets.nim CC: ../../usr/share/nimble/unicodedb/unicodedb/properties_data.nim CC: ../../usr/share/nimble/unicodedb/unicodedb/properties.nim CC: ../../usr/share/nimble/regex/regex/common.nim CC: ../../usr/share/nimble/regex/regex/nodetype.nim CC: ../../usr/share/nimble/regex/regex/nfa.nim CC: ../../usr/share/nimble/unicodedb/unicodedb/types_data.nim CC: ../../usr/share/nimble/unicodedb/unicodedb/types.nim CC: ../../usr/share/nimble/unicodeplus/unicodeplus.nim CC: ../../usr/share/nimble/regex/regex/nodematch.nim CC: ../../usr/share/nimble/regex/regex/litopt.nim CC: ../../usr/share/nimble/regex/regex/nfatype.nim CC: ../../usr/share/nimble/regex/regex/nfafindall.nim CC: ../../usr/share/nimble/regex/regex/nfamatch.nim CC: ../../usr/share/nimble/docopt/docopt/util.nim CC: ../../usr/share/nimble/docopt/docopt.nim CC: depthstat.nim CC: mosdepth.nim Hint: [Link] Hint: 81532 lines; 10.706s; 181.285MiB peakmem; Release build; proj: /build/mosdepth-0.3.1+ds/mosdepth.nim; out: /build/mosdepth-0.3.1+ds/mosdepth [SuccessX] help2man --no-info --no-discard-stderr --help-option="-h" ./mosdepth > debian/mosdepth.1 rm -f tests/missing.bed for f in debian/missing-sources/*; do \ outp=tests/`echo $f | sed -e 's/sam/bam/' -e 's/debian\/missing\-sources\///'` ; \ cat $f | samtools view -Sb - > $outp ; \ if [ "$outp" = "tests/big.bam" ] ; then \ samtools index $outp -c ; \ continue ; \ fi ; \ samtools index $outp ; \ done make[1]: Leaving directory '/build/mosdepth-0.3.1+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing debian/rules override_dh_dwz make[1]: Entering directory '/build/mosdepth-0.3.1+ds' dh_dwz || true dwz: debian/mosdepth/usr/bin/mosdepth: Unknown DWARF DW_OP_235 dh_dwz: error: dwz -- debian/mosdepth/usr/bin/mosdepth returned exit code 1 make[1]: Leaving directory '/build/mosdepth-0.3.1+ds' dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mosdepth' in '../mosdepth_0.3.1+ds-2_amd64.deb'. dpkg-deb: building package 'mosdepth-dbgsym' in '../mosdepth-dbgsym_0.3.1+ds-2_amd64.deb'. dpkg-deb: building package 'mosdepth-examples' in '../mosdepth-examples_0.3.1+ds-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mosdepth_0.3.1+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/197552 and its subdirectories I: Current time: Thu Jan 13 10:23:40 -12 2022 I: pbuilder-time-stamp: 1642112620 Thu Jan 13 22:23:41 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Thu Jan 13 22:23:41 UTC 2022 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Thu Jan 13 22:24:18 UTC 2022 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Thu Jan 13 22:24:18 UTC 2022 I: mosdepth_0.3.1+ds-2_amd64.changes: Format: 1.8 Date: Sun, 15 Nov 2020 22:21:32 +0530 Source: mosdepth Binary: mosdepth mosdepth-dbgsym mosdepth-examples Architecture: amd64 all Version: 0.3.1+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: mosdepth - BAM/CRAM depth calculation biological sequencing mosdepth-examples - Test data for mosdepth Changes: mosdepth (0.3.1+ds-2) unstable; urgency=medium . [ Steffen Moeller ] * Set -d:release flag/ * Extended clean * Avoid redundant tests/missing.bed * Respecting request not to test . [ Nilesh Patra ] * nimcache in current directory * Regenerate files during build so there are no install problems in mosdepth-examples if tests are not run * Enable debuginfo and override dh_dwz since this doesn't seem to handle nim debug symbols well * Add myself to uploaders * Limit Archs Checksums-Sha1: ead224f6ec8c69ce57cd94ff95eb631b47c84a11 1237064 mosdepth-dbgsym_0.3.1+ds-2_amd64.deb eee61302f3ba864db7da461e23faa0f5b47032f3 1037332 mosdepth-examples_0.3.1+ds-2_all.deb 51159ff37da497c7af6839a4d9e53e34682f1a51 6320 mosdepth_0.3.1+ds-2_amd64.buildinfo e61debf26ebb3762bde2552f7da4bec5b355ac50 155676 mosdepth_0.3.1+ds-2_amd64.deb Checksums-Sha256: 3cc1f781098b12f2e8db3d4beb9dff3d6706d857e83eb7afd69bcb19fb53902e 1237064 mosdepth-dbgsym_0.3.1+ds-2_amd64.deb 0113b99d5ca2dd2f439df220c135940c84f5906b6f57bd78932d1246497c216a 1037332 mosdepth-examples_0.3.1+ds-2_all.deb 0c261b5531df311c4661a63dd120790e52e196fb58adf6aeb7db8bac43cdd190 6320 mosdepth_0.3.1+ds-2_amd64.buildinfo 3f34ab6c02ea84a843f1aef59e40f148aba801176c0c3cca8378f0ec91e70f01 155676 mosdepth_0.3.1+ds-2_amd64.deb Files: 6ecf7ca22f1b5555084f1097f0dab94c 1237064 debug optional mosdepth-dbgsym_0.3.1+ds-2_amd64.deb ca81b9314dfd2b96836b98f939928f9b 1037332 science optional mosdepth-examples_0.3.1+ds-2_all.deb 18797d664eff1234cd55657cc484ca2e 6320 science optional mosdepth_0.3.1+ds-2_amd64.buildinfo 4180e15b17ccf4882f8d32c466742c0b 155676 science optional mosdepth_0.3.1+ds-2_amd64.deb Thu Jan 13 22:24:19 UTC 2022 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Yyw6X3Tzee/mosdepth_0.3.1+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Yyw6X3Tzee/mosdepth_0.3.1+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Yyw6X3Tzee/mosdepth_0.3.1+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Yyw6X3Tzee/b1/mosdepth_0.3.1+ds-2_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.Yyw6X3Tzee/b2/mosdepth_0.3.1+ds-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.312s) 0.312s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.054s) 0.054s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jan 13 22:24:21 UTC 2022 I: found no differences in the changes files, and a .buildinfo file also exists. Thu Jan 13 22:24:21 UTC 2022 I: mosdepth from bullseye built successfully and reproducibly on amd64. Thu Jan 13 22:24:22 UTC 2022 I: Submitting .buildinfo files to external archives: Thu Jan 13 22:24:22 UTC 2022 I: Submitting 8.0K b1/mosdepth_0.3.1+ds-2_amd64.buildinfo.asc Thu Jan 13 22:24:23 UTC 2022 I: Submitting 8.0K b2/mosdepth_0.3.1+ds-2_amd64.buildinfo.asc Thu Jan 13 22:24:24 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jan 13 22:24:24 UTC 2022 I: Done submitting .buildinfo files. Thu Jan 13 22:24:24 UTC 2022 I: Removing signed mosdepth_0.3.1+ds-2_amd64.buildinfo.asc files: removed './b1/mosdepth_0.3.1+ds-2_amd64.buildinfo.asc' removed './b2/mosdepth_0.3.1+ds-2_amd64.buildinfo.asc'