Wed Feb 9 16:52:20 UTC 2022 I: starting to build mmdb/bullseye/amd64 on jenkins on '2022-02-09 16:52' Wed Feb 9 16:52:20 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_28/105701/console.log Wed Feb 9 16:52:20 UTC 2022 I: Downloading source for bullseye/mmdb=2.0.5-1 --2022-02-09 16:52:21-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/mmdb/mmdb_2.0.5-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2122 (2.1K) Saving to: ‘mmdb_2.0.5-1.dsc’ 0K .. 100% 86.4M=0s 2022-02-09 16:52:21 (86.4 MB/s) - ‘mmdb_2.0.5-1.dsc’ saved [2122/2122] Wed Feb 9 16:52:21 UTC 2022 I: mmdb_2.0.5-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mmdb Binary: libmmdb2-dev, libmmdb2-0 Architecture: any Version: 2.0.5-1 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Andrius Merkys Homepage: http://www.ccp4.ac.uk/ Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/science-team/mmdb Vcs-Git: https://salsa.debian.org/science-team/mmdb.git Build-Depends: debhelper (>= 11) Package-List: libmmdb2-0 deb libs optional arch=any libmmdb2-dev deb libdevel optional arch=any Checksums-Sha1: 604c6454a6ca989d6a73d976515b721ed610c60a 733138 mmdb_2.0.5.orig.tar.gz e0e100f6a0ec3eeeea9e762bdcab1b387278f08a 2552 mmdb_2.0.5-1.debian.tar.xz Checksums-Sha256: 7be92fa9348c83384111687e8e093dcc92f609e6caaad78f6275317aa0de1320 733138 mmdb_2.0.5.orig.tar.gz 80427b32d19fdd85f2f570a60ea5ca1f5f0feb7205dd359ad018dbda3f2c4073 2552 mmdb_2.0.5-1.debian.tar.xz Files: 1684dec319971e2710dac1fbd2917ab8 733138 mmdb_2.0.5.orig.tar.gz d724215ce9904a86ffa08ab2ce7c0639 2552 mmdb_2.0.5-1.debian.tar.xz Dgit: 11711db6fc23f9ad4765f14f16582626e6ebdd29 debian archive/debian/2.0.5-1 https://git.dgit.debian.org/mmdb -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE2bRTt5m4gw2UXmoKW/VOXhK5ALsFAlruqhYRHHBpY2NhQGRl Ymlhbi5vcmcACgkQW/VOXhK5ALudxg//aayHINlCnGm7Yz4g9Isw4y651XlDQEgp HVKyocK9p2gjWZjikTtUjklGI8wKXEsf0JFaIuQi84aEpx4c7y/Au9ZsjBjDhGEV v7pHh2BI+o2JVHEZnW/yjGuj5jStbuIQ+5JFN3Wgq04J2Q0LIlTELGYWSRM4Uxvt k8nNRCfFn4Pmc6fh8rfFgJX70SRpsNTps0PbCCvsOvGWi/F94TYIdc3M9PV/8KSV SXaiWTW+HdCI+LSitPZs2EG+YsGWDZjZDEEsPYgBbnB7g6cy32nMSmvVLZbeTINS SN+k8UrzRISH98cx+Hp/A4Dshr2T5cbUbHQeT83wh1gYJiO+uCo9wM+Ps+/c+Rml KJo/FmTpSto9XRRjASqJnmhR+dpAKwjGt0K3lg7nDOUNpPpviMxpUWh32nzbLNrq r40QAqb+EjkXuIu5SeXPy2+HfSJfNjsyPzJC9Fe2CctWDr23powUvpqcEkncaMml dHYE+IZhr3p4TBlZRCrRNamTACIIqvXm7k2QRmBxye/f8YOaw7uPiZCCUmL/hzv0 crfNS2xgpRm4Mmqnu9IZ4ZeCMSTBX1kTflG68i5qTbUSz+iFVmNzPSbNLEeKJdd/ xOwm+yYgouzbZAUf7k6dINC0wSLMbB71524pUNegFikaC6n2uhKxSFTlekEhjhU4 uxAH51fLUjY= =vRPJ -----END PGP SIGNATURE----- Wed Feb 9 16:52:21 UTC 2022 I: Checking whether the package is not for us Wed Feb 9 16:52:21 UTC 2022 I: Starting 1st build on remote node ionos15-amd64.debian.net. Wed Feb 9 16:52:21 UTC 2022 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Wed Feb 9 16:53:11 UTC 2022 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Mar 14 11:15:23 -12 2023 I: pbuilder-time-stamp: 1678835723 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mmdb_2.0.5-1.dsc] I: copying [./mmdb_2.0.5.orig.tar.gz] I: copying [./mmdb_2.0.5-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ILluFLIU/trustedkeys.kbx': General error gpgv: Signature made Sat May 5 19:09:10 2018 -12 gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: issuer "picca@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mmdb_2.0.5-1.dsc dpkg-source: info: extracting mmdb in mmdb-2.0.5 dpkg-source: info: unpacking mmdb_2.0.5.orig.tar.gz dpkg-source: info: unpacking mmdb_2.0.5-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2511081/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d2483bf106ce4196840d7cb7a3e273dc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2511081' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.lBL2dBRPMy/pbuilderrc_gOpG --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.lBL2dBRPMy/b1 --logfile b1/build.log mmdb_2.0.5-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.15.0-0.bpo.2-amd64 #1 SMP Debian 5.15.5-2~bpo11+1 (2022-01-02) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Mar 12 03:46 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/2511081/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 67.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Fetched 18.3 MB in 0s (86.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../10-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../23-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../25-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... 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Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/mmdb-2.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmdb_2.0.5-1_source.changes dpkg-buildpackage: info: source package mmdb dpkg-buildpackage: info: source version 2.0.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf --ddeb-migration='libmmdb2-0-dbg (<< 2.0.5-1~)' dh_auto_clean "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_autoreconf_clean "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_clean "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" debian/rules build dh build --with autoreconf --ddeb-migration='libmmdb2-0-dbg (<< 2.0.5-1~)' dh_update_autotools_config "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_autoreconf "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:9: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mmdb-2.0.5' dh_auto_configure -- --enable-shared --disable-static ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-shared --disable-static checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for library containing cos... -lm checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating mmdb2.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/mmdb-2.0.5' dh_auto_build "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" make -j16 make[1]: Entering directory '/build/mmdb-2.0.5' make all-am make[2]: Entering directory '/build/mmdb-2.0.5' /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/hybrid_36.lo mmdb2/hybrid_36.cpp /bin/bash ./libtool --tag=CXX 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/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_machine_.lo mmdb2/mmdb_machine_.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_rand.lo mmdb2/mmdb_math_rand.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_tables.lo mmdb2/mmdb_tables.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o 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-Werror=format-security -c -o mmdb2/mmdb_cifdefs.lo mmdb2/mmdb_cifdefs.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_.lo mmdb2/mmdb_math_.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_model.lo mmdb2/mmdb_model.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_utils.lo mmdb2/mmdb_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_cifdefs.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_cifdefs.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_coormngr.lo mmdb2/mmdb_coormngr.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_model.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_model.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_align.lo mmdb2/mmdb_math_align.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_root.lo mmdb2/mmdb_root.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_utils.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_utils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_coormngr.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_coormngr.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_xml_.lo mmdb2/mmdb_xml_.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_cryst.lo mmdb2/mmdb_cryst.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_align.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_align.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_bfgsmin.lo mmdb2/mmdb_math_bfgsmin.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_rwbrook.lo mmdb2/mmdb_rwbrook.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_root.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_root.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_xml_.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_xml_.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_cryst.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_cryst.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_bfgsmin.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_bfgsmin.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_ficif.lo mmdb2/mmdb_ficif.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_rwbrook.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_rwbrook.o In file included from /usr/include/string.h:495, from mmdb2/mmdb_title.cpp:55: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'virtual void mmdb::Remark::PDBASCIIDump(mmdb::pstr, int)' at mmdb2/mmdb_title.cpp:1364:18, inlined from 'virtual void mmdb::Remark::PDBASCIIDump(mmdb::pstr, int)' at mmdb2/mmdb_title.cpp:1357:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdb2/mmdb_title.cpp: In member function 'virtual void mmdb::Remark::PDBASCIIDump(mmdb::pstr, int)': mmdb2/mmdb_title.cpp:1364:50: note: length computed here 1364 | strncpy ( &(S[11]),remark,IMin(68,strlen(remark)) ); | ~~~~~~^~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_ficif.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_ficif.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_fft.lo mmdb2/mmdb_math_fft.cpp In file included from /usr/include/string.h:495, from mmdb2/mmdb_mmcif_.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void mmdb::mmcif::Loop::CopyString(mmdb::pstr, int, mmdb::cpstr, int, int&)' at mmdb2/mmdb_mmcif_.cpp:1058:17: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdb2/mmdb_mmcif_.cpp: In member function 'void mmdb::mmcif::Loop::CopyString(mmdb::pstr, int, mmdb::cpstr, int, int&)': mmdb2/mmdb_mmcif_.cpp:1058:46: note: length computed here 1058 | strncpy ( buf,p,IMin(maxlength,strlen(p)+1) ); | ~~~~~~^~~ mmdb2/mmdb_atom.cpp: In member function 'char* mmdb::Atom::GetAtomIDfmt(mmdb::pstr)': mmdb2/mmdb_atom.cpp:1369:30: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 1369 | sprintf ( S,"%4s[%2s]:%1s",name,element,altLoc ); | ^ In file included from /usr/include/stdio.h:867, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_io_stream.h:42, from mmdb2/mmdb_chain.h:51, from mmdb2/mmdb_atom.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 11 and 51 bytes into a destination of size 50 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdb2/mmdb_root.cpp: In member function 'int mmdb::Root::GenerateNCSMates()': mmdb2/mmdb_root.cpp:1378:43: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 0 and 9 [-Wformat-overflow=] 1378 | sprintf ( chainID,"%s_%i", | ^~ mmdb2/mmdb_root.cpp:1378:39: note: directive argument in the range [1, 2147483647] 1378 | sprintf ( chainID,"%s_%i", | ^~~~~~~ In file included from /usr/include/stdio.h:867, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_root.h:44, from mmdb2/mmdb_root.cpp:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 3 and 21 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_fft.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_fft.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_selmngr.lo mmdb2/mmdb_selmngr.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_io_file.lo mmdb2/mmdb_io_file.cpp In file included from /usr/include/string.h:495, from mmdb2/mmdb_cryst.cpp:43: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'virtual void mmdb::TVect::PDBASCIIDump(mmdb::pstr, int)' at mmdb2/mmdb_cryst.cpp:412:15: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdb2/mmdb_cryst.cpp: In member function 'virtual void mmdb::TVect::PDBASCIIDump(mmdb::pstr, int)': mmdb2/mmdb_cryst.cpp:412:48: note: length computed here 412 | strncpy ( &(S[40]),comment,IMin(30,strlen(comment)) ); | ~~~~~~^~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_selmngr.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_selmngr.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_graph.lo mmdb2/mmdb_math_graph.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_seqsuperpose.lo mmdb2/mmdb_seqsuperpose.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_io_file.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_io_file.o mmdb2/mmdb_cryst.cpp: In member function 'int mmdb::Cryst::FixSpaceGroup()': mmdb2/mmdb_cryst.cpp:703:41: warning: '%s' directive writing up to 99 bytes into a region of size 94 [-Wformat-overflow=] 703 | sprintf ( spaceGroupFix,"%c 1 1 %s",spaceGroup[0], | ^~ In file included from /usr/include/stdio.h:867, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_io_stream.h:42, from mmdb2/mmdb_cryst.h:46, from mmdb2/mmdb_cryst.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 7 and 106 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdb2/mmdb_cryst.cpp:697:39: warning: '%s' directive writing up to 99 bytes into a region of size 96 [-Wformat-overflow=] 697 | sprintf ( spaceGroupFix,"%c 1 %s 1",spaceGroup[0], | ^~ In file included from /usr/include/stdio.h:867, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_io_stream.h:42, from mmdb2/mmdb_cryst.h:46, from mmdb2/mmdb_cryst.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 7 and 106 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from mmdb2/mmdb_cryst.cpp:43: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void mmdb::Cryst::PDBASCIIDump(mmdb::io::RFile)' at mmdb2/mmdb_cryst.cpp:877:17: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:34: warning: 'char* __builtin___strncpy_chk(char*, const char*, long unsigned int, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdb2/mmdb_cryst.cpp: In member function 'void mmdb::Cryst::PDBASCIIDump(mmdb::io::RFile)': mmdb2/mmdb_cryst.cpp:877:53: note: length computed here 877 | strncpy ( &(S[55]),spaceGroup,IMin(11,strlen(spaceGroup)) ); | ~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_graph.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_graph.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_seqsuperpose.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_seqsuperpose.o mmdb2/mmdb_model.cpp: In member function 'mmdb::Chain* mmdb::Model::GetChainCreate(const char*, bool)': mmdb2/mmdb_model.cpp:3069:46: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 3069 | if (k) sprintf ( chainID,"%s%i",chID,k-1 ); | ^ In file included from /usr/include/stdio.h:867, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_io_stream.h:42, from mmdb2/mmdb_model.h:57, from mmdb2/mmdb_model.cpp:57: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 11) into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdb2/mmdb_model.cpp: In member function 'void mmdb::Model::MoveChain(mmdb::Chain*&, mmdb::PPAtom, mmdb::PPAtom, int&, int)': mmdb2/mmdb_model.cpp:4644:33: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 0 and 9 [-Wformat-overflow=] 4644 | sprintf ( chainID,"%s_%i",m_chain->chainID,chain_ext ); | ^~ mmdb2/mmdb_model.cpp:4644:29: note: directive argument in the range [1, 2147483647] 4644 | sprintf ( chainID,"%s_%i",m_chain->chainID,chain_ext ); | ^~~~~~~ In file included from /usr/include/stdio.h:867, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_io_stream.h:42, from mmdb2/mmdb_model.h:57, from mmdb2/mmdb_model.cpp:57: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 3 and 21 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdb2/mmdb_model.cpp:4664:37: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 0 and 9 [-Wformat-overflow=] 4664 | else sprintf ( chainID,"%s_%i",m_chain->chainID,k ); | ^~ mmdb2/mmdb_model.cpp:4664:33: note: directive argument in the range [1, 2147483647] 4664 | else sprintf ( chainID,"%s_%i",m_chain->chainID,k ); | ^~~~~~~ In file included from /usr/include/stdio.h:867, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_io_stream.h:42, from mmdb2/mmdb_model.h:57, from mmdb2/mmdb_model.cpp:57: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 3 and 21 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdb2/mmdb_model.cpp:4662:37: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 0 and 9 [-Wformat-overflow=] 4662 | sprintf ( chainID,"%s_%i_%i",m_chain->chainID, | ^~ mmdb2/mmdb_model.cpp:4662:33: note: directive argument in the range [1, 2147483647] 4662 | sprintf ( chainID,"%s_%i_%i",m_chain->chainID, | ^~~~~~~~~~ mmdb2/mmdb_model.cpp:4662:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:867, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_io_stream.h:42, from mmdb2/mmdb_model.h:57, from mmdb2/mmdb_model.cpp:57: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 32 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -no-undefined -Wl,-z,relro -o mmdb2/libmmdb2.la -rpath /usr/lib/x86_64-linux-gnu mmdb2/hybrid_36.lo mmdb2/mmdb_io_stream.lo mmdb2/mmdb_math_linalg.lo mmdb2/mmdb_symop.lo mmdb2/mmdb_atom.lo mmdb2/mmdb_machine_.lo mmdb2/mmdb_math_rand.lo mmdb2/mmdb_tables.lo mmdb2/mmdb_bondmngr.lo mmdb2/mmdb_manager.lo mmdb2/mmdb_mattype.lo mmdb2/mmdb_title.lo mmdb2/mmdb_chain.lo mmdb2/mmdb_mask.lo mmdb2/mmdb_mmcif_.lo mmdb2/mmdb_uddata.lo mmdb2/mmdb_cifdefs.lo mmdb2/mmdb_math_.lo mmdb2/mmdb_model.lo mmdb2/mmdb_utils.lo mmdb2/mmdb_coormngr.lo mmdb2/mmdb_math_align.lo mmdb2/mmdb_root.lo mmdb2/mmdb_xml_.lo mmdb2/mmdb_cryst.lo mmdb2/mmdb_math_bfgsmin.lo mmdb2/mmdb_rwbrook.lo mmdb2/mmdb_ficif.lo mmdb2/mmdb_math_fft.lo mmdb2/mmdb_selmngr.lo mmdb2/mmdb_io_file.lo mmdb2/mmdb_math_graph.lo mmdb2/mmdb_seqsuperpose.lo -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o mmdb2/.libs/hybrid_36.o mmdb2/.libs/mmdb_io_stream.o mmdb2/.libs/mmdb_math_linalg.o mmdb2/.libs/mmdb_symop.o mmdb2/.libs/mmdb_atom.o mmdb2/.libs/mmdb_machine_.o mmdb2/.libs/mmdb_math_rand.o mmdb2/.libs/mmdb_tables.o mmdb2/.libs/mmdb_bondmngr.o mmdb2/.libs/mmdb_manager.o mmdb2/.libs/mmdb_mattype.o mmdb2/.libs/mmdb_title.o mmdb2/.libs/mmdb_chain.o mmdb2/.libs/mmdb_mask.o mmdb2/.libs/mmdb_mmcif_.o mmdb2/.libs/mmdb_uddata.o mmdb2/.libs/mmdb_cifdefs.o mmdb2/.libs/mmdb_math_.o mmdb2/.libs/mmdb_model.o mmdb2/.libs/mmdb_utils.o mmdb2/.libs/mmdb_coormngr.o mmdb2/.libs/mmdb_math_align.o mmdb2/.libs/mmdb_root.o mmdb2/.libs/mmdb_xml_.o mmdb2/.libs/mmdb_cryst.o mmdb2/.libs/mmdb_math_bfgsmin.o mmdb2/.libs/mmdb_rwbrook.o mmdb2/.libs/mmdb_ficif.o mmdb2/.libs/mmdb_math_fft.o mmdb2/.libs/mmdb_selmngr.o mmdb2/.libs/mmdb_io_file.o mmdb2/.libs/mmdb_math_graph.o mmdb2/.libs/mmdb_seqsuperpose.o -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libmmdb2.so.0 -o mmdb2/.libs/libmmdb2.so.0.0.0 libtool: link: (cd "mmdb2/.libs" && rm -f "libmmdb2.so.0" && ln -s "libmmdb2.so.0.0.0" "libmmdb2.so.0") libtool: link: (cd "mmdb2/.libs" && rm -f "libmmdb2.so" && ln -s "libmmdb2.so.0.0.0" "libmmdb2.so") libtool: link: ( cd "mmdb2/.libs" && rm -f "libmmdb2.la" && ln -s "../libmmdb2.la" "libmmdb2.la" ) make[2]: Leaving directory '/build/mmdb-2.0.5' make[1]: Leaving directory '/build/mmdb-2.0.5' dh_auto_test "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" make -j16 check VERBOSE=1 make[1]: Entering directory '/build/mmdb-2.0.5' make[1]: Leaving directory '/build/mmdb-2.0.5' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with autoreconf --ddeb-migration='libmmdb2-0-dbg (<< 2.0.5-1~)' dh_testroot "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_prep "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_auto_install "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" make -j1 install DESTDIR=/build/mmdb-2.0.5/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/mmdb-2.0.5' make[2]: Entering directory '/build/mmdb-2.0.5' /bin/mkdir -p '/build/mmdb-2.0.5/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c mmdb2/libmmdb2.la '/build/mmdb-2.0.5/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c mmdb2/.libs/libmmdb2.so.0.0.0 /build/mmdb-2.0.5/debian/tmp/usr/lib/x86_64-linux-gnu/libmmdb2.so.0.0.0 libtool: install: (cd /build/mmdb-2.0.5/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmmdb2.so.0.0.0 libmmdb2.so.0 || { rm -f libmmdb2.so.0 && ln -s libmmdb2.so.0.0.0 libmmdb2.so.0; }; }) libtool: install: (cd /build/mmdb-2.0.5/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmmdb2.so.0.0.0 libmmdb2.so || { rm -f libmmdb2.so && ln -s libmmdb2.so.0.0.0 libmmdb2.so; }; }) libtool: install: /usr/bin/install -c mmdb2/.libs/libmmdb2.lai /build/mmdb-2.0.5/debian/tmp/usr/lib/x86_64-linux-gnu/libmmdb2.la libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/mmdb-2.0.5/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 mmdb2.pc '/build/mmdb-2.0.5/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /bin/mkdir -p '/build/mmdb-2.0.5/debian/tmp/usr/include/mmdb2' /usr/bin/install -c -m 644 mmdb2/hybrid_36.h mmdb2/mmdb_io_file.h mmdb2/mmdb_math_graph.h mmdb2/mmdb_seqsuperpose.h mmdb2/mmdb_atom.h mmdb2/mmdb_io_stream.h mmdb2/mmdb_math_linalg.h mmdb2/mmdb_symop.h mmdb2/mmdb_bondmngr.h mmdb2/mmdb_machine_.h mmdb2/mmdb_math_rand.h mmdb2/mmdb_tables.h mmdb2/mmdb_chain.h mmdb2/mmdb_manager.h mmdb2/mmdb_mattype.h mmdb2/mmdb_title.h mmdb2/mmdb_cifdefs.h mmdb2/mmdb_mask.h mmdb2/mmdb_mmcif_.h mmdb2/mmdb_uddata.h mmdb2/mmdb_coormngr.h mmdb2/mmdb_math_.h mmdb2/mmdb_model.h mmdb2/mmdb_utils.h mmdb2/mmdb_cryst.h mmdb2/mmdb_math_align.h mmdb2/mmdb_root.h mmdb2/mmdb_xml_.h mmdb2/mmdb_defs.h mmdb2/mmdb_math_bfgsmin.h mmdb2/mmdb_rwbrook.h mmdb2/mmdb_ficif.h mmdb2/mmdb_math_fft.h mmdb2/mmdb_selmngr.h '/build/mmdb-2.0.5/debian/tmp/usr/include/mmdb2' make[2]: Leaving directory '/build/mmdb-2.0.5' make[1]: Leaving directory '/build/mmdb-2.0.5' debian/rules override_dh_install make[1]: Entering directory '/build/mmdb-2.0.5' # libmmdb2-0 dh_installdocs -p libmmdb2-0 README dh_install -p libmmdb2-0 usr/lib/*/libmmdb2.so.* # libmmdb2-dev dh_install -p libmmdb2-dev usr/include/mmdb2/* dh_install -p libmmdb2-dev usr/lib/*/libmmdb2*.so dh_install -p libmmdb2-dev usr/lib/*/pkgconfig/mmdb2.pc make[1]: Leaving directory '/build/mmdb-2.0.5' dh_installdocs "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_installchangelogs "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_installinit "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_perl "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_link "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_strip_nondeterminism "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_compress "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_fixperms "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_missing "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_strip "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_makeshlibs "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_shlibdeps "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_installdeb "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_gencontrol "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_md5sums "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_builddeb "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dpkg-deb: building package 'libmmdb2-dev' in '../libmmdb2-dev_2.0.5-1_amd64.deb'. dpkg-deb: building package 'libmmdb2-0' in '../libmmdb2-0_2.0.5-1_amd64.deb'. dpkg-deb: building package 'libmmdb2-0-dbgsym' in '../libmmdb2-0-dbgsym_2.0.5-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mmdb_2.0.5-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2511081 and its subdirectories I: Current time: Tue Mar 14 11:16:11 -12 2023 I: pbuilder-time-stamp: 1678835771 Wed Feb 9 16:53:12 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Wed Feb 9 16:53:12 UTC 2022 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Wed Feb 9 16:54:35 UTC 2022 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Wed Feb 9 16:54:36 UTC 2022 I: mmdb_2.0.5-1_amd64.changes: Format: 1.8 Date: Thu, 03 May 2018 01:43:48 -0400 Source: mmdb Binary: libmmdb2-0 libmmdb2-0-dbgsym libmmdb2-dev Architecture: amd64 Version: 2.0.5-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: libmmdb2-0 - macromolecular coordinate library - runtime libmmdb2-dev - macromolecular coordinate library - development files Changes: mmdb (2.0.5-1) unstable; urgency=medium . * Upload to unstable. * debian/copyright: HTTP -> HTTPS * debian/compat: bump to 11 * debian/control - Removed useless dependency on dh-autoreconf - Bump Standards-Version 4.1.4 (nothing to do) - Migrated debug symbols package * debian/watch: Added passive mode for FTP Checksums-Sha1: aeabf21bbd034cc9d2aa52c984a0b486fa8b3aeb 1045980 libmmdb2-0-dbgsym_2.0.5-1_amd64.deb 047ee60317d3757f31223f8f45a4616d29b81ac8 338276 libmmdb2-0_2.0.5-1_amd64.deb 740ed8011c38b5055cb67af2ebb7d6cfa8ae2fe0 91888 libmmdb2-dev_2.0.5-1_amd64.deb f517addb5326da17ec50d170a788cbbc8e10300f 5303 mmdb_2.0.5-1_amd64.buildinfo Checksums-Sha256: c21b87d4932b32d36f6660452036479d016ed6a75acbaebb72bc5e6fee760f64 1045980 libmmdb2-0-dbgsym_2.0.5-1_amd64.deb 8489a755e86ce763b43ff2cb0da6361f377b315aefacaf43a3ac069c231d3530 338276 libmmdb2-0_2.0.5-1_amd64.deb 607ed5e694b946a7c44312b3fc7adf1d42e839b0dc377d0f7b8c2517cb75b72e 91888 libmmdb2-dev_2.0.5-1_amd64.deb 9fb290f9cf5b6b2acd2932524b0a11a9f432b701257b92a6c83157acb3fae6cb 5303 mmdb_2.0.5-1_amd64.buildinfo Files: f856f50ba0d3327653665276500da144 1045980 debug optional libmmdb2-0-dbgsym_2.0.5-1_amd64.deb b7f72be9a9d1ad81c7f8420bac699d43 338276 libs optional libmmdb2-0_2.0.5-1_amd64.deb eedcad171f0b189fb25cfd3c51b868f2 91888 libdevel optional libmmdb2-dev_2.0.5-1_amd64.deb 6629796000c3e2dee1ef6305db6b58c9 5303 science optional mmdb_2.0.5-1_amd64.buildinfo Wed Feb 9 16:54:37 UTC 2022 I: diffoscope 203 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 5400 --html /srv/reproducible-results/rbuild-debian/tmp.lBL2dBRPMy/mmdb_2.0.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.lBL2dBRPMy/mmdb_2.0.5-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.lBL2dBRPMy/mmdb_2.0.5-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.lBL2dBRPMy/b1/mmdb_2.0.5-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.lBL2dBRPMy/b2/mmdb_2.0.5-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.557s) 0.557s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.050s) 0.050s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Wed Feb 9 16:54:39 UTC 2022 I: diffoscope 203 found no differences in the changes files, and a .buildinfo file also exists. Wed Feb 9 16:54:39 UTC 2022 I: mmdb from bullseye built successfully and reproducibly on amd64. Wed Feb 9 16:54:41 UTC 2022 I: Submitting .buildinfo files to external archives: Wed Feb 9 16:54:41 UTC 2022 I: Submitting 8.0K b1/mmdb_2.0.5-1_amd64.buildinfo.asc Wed Feb 9 16:54:43 UTC 2022 I: Submitting 8.0K b2/mmdb_2.0.5-1_amd64.buildinfo.asc Wed Feb 9 16:54:44 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Feb 9 16:54:44 UTC 2022 I: Done submitting .buildinfo files. Wed Feb 9 16:54:44 UTC 2022 I: Removing signed mmdb_2.0.5-1_amd64.buildinfo.asc files: removed './b1/mmdb_2.0.5-1_amd64.buildinfo.asc' removed './b2/mmdb_2.0.5-1_amd64.buildinfo.asc'