Sun Jan 16 17:52:57 UTC 2022 I: starting to build dialign-t/bullseye/amd64 on jenkins on '2022-01-16 17:52' Sun Jan 16 17:52:57 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_15/4066/console.log Sun Jan 16 17:52:57 UTC 2022 I: Downloading source for bullseye/dialign-t=1.0.2-13 --2022-01-16 17:52:57-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dialign-t/dialign-t_1.0.2-13.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2081 (2.0K) Saving to: ‘dialign-t_1.0.2-13.dsc’ 0K .. 100% 59.5M=0s 2022-01-16 17:52:57 (59.5 MB/s) - ‘dialign-t_1.0.2-13.dsc’ saved [2081/2081] Sun Jan 16 17:52:57 UTC 2022 I: dialign-t_1.0.2-13.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dialign-t Binary: dialign-tx, dialign-tx-data Architecture: any all Version: 1.0.2-13 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: https://dialign-tx.gobics.de/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/dialign-t Vcs-Git: https://salsa.debian.org/med-team/dialign-t.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: dialign-tx deb science optional arch=any dialign-tx-data deb science optional arch=all Checksums-Sha1: 4d4e50070f019b88078105ec21f22b1005a010af 1765296 dialign-t_1.0.2.orig.tar.gz 5e78b85c53f3a799eb63b877b4f737a0429cff14 18716 dialign-t_1.0.2-13.debian.tar.xz Checksums-Sha256: fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f 1765296 dialign-t_1.0.2.orig.tar.gz 9181953501ec429fb72212da26900cea64812b49a39fe2c46c11db5e8ba79093 18716 dialign-t_1.0.2-13.debian.tar.xz Files: 8ccfb1d91136157324d1e513f184ca29 1765296 dialign-t_1.0.2.orig.tar.gz f6c88f5ffd94a65b0e408b10b10f06ca 18716 dialign-t_1.0.2-13.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8ZNYARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEUWg//WWhjVfDpdB7YH16kciL/byl2eBiJkbAM 3a/bYK/2OTMbOjU7NVAaDjmdXJEc3PQWPDX3AIXz9FPjbgvFyNsaD2KuBCjiOiDd 2nnUgALMvbQLvZv9WFjt/bcS9YaqtD2MF04jBz3tJl1zUGXGiIF9xEL8GzLzfrMH PLdgXiV2ZXI2zay6bdYtkFvBxEARUaEFYK0qhXYj9lD/Z7vyqT81Ug5i4YVaAAYy DNvDjo0UBwcDyAd3INVDRpcrwpZKSMufGrUeHkHpCFY3xLW9ZhZNoUzf6VfKjVwz MPqHLyVnqqCAnVFmS5mpU5eln9dBhBlGpwqOHowuXEAVQk0ws2uhEHTZyMhaglnM 4H1aVV2qOFwJwt7TweiQd8BNSbdixb4i8AuL5/siDAP3gpG6Mhk3KMo7tHvDLBQr d10vBToyuaVzD/wEipsnr/8Rje+kVaQSwENleoHhYL2wl1EWeolvKas+sPNQ1dHn vSVcGUd7AagbDhgXUNcrnKlUD5fUl6iqOZ0BKsb9XTb9IZdTDr4KnoQptIE9DoY/ VRNtq2SaS+gM3VyFkVQ3xQFV9tbAdtEFLCrt5ZgALSqALgqAdG2GWZc96+IsEMLC b915/NuJ7HyfXCcx7myUBzpdwveuaNQDbDI/If0cOvHoBzZEXE0uKfcblAK/ffQt b4hTvpuhoB0= =BB0t -----END PGP SIGNATURE----- Sun Jan 16 17:52:58 UTC 2022 I: Checking whether the package is not for us Sun Jan 16 17:52:58 UTC 2022 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Jan 16 17:52:58 UTC 2022 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Jan 16 17:54:40 UTC 2022 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 16 05:53:00 -12 2022 I: pbuilder-time-stamp: 1642355580 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign-t_1.0.2-13.dsc] I: copying [./dialign-t_1.0.2.orig.tar.gz] I: copying [./dialign-t_1.0.2-13.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.qqnEIyXI/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 22 19:00:16 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dialign-t_1.0.2-13.dsc dpkg-source: info: extracting dialign-t in dialign-t-1.0.2 dpkg-source: info: unpacking dialign-t_1.0.2.orig.tar.gz dpkg-source: info: unpacking dialign-t_1.0.2-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying prevent_enforcing_arch.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying consistent_declarations.patch dpkg-source: info: applying clang-ftbfs.diff dpkg-source: info: applying spelling.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying gcc10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19521/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5a6407b2eaf349bfa86af960a770b386' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='19521' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NV1BK4GDLY/pbuilderrc_PqV4 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NV1BK4GDLY/b1 --logfile b1/build.log dialign-t_1.0.2-13.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/19521/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 67.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Fetched 18.3 MB in 1s (30.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../10-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../23-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../25-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... 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Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign-t_1.0.2-13_source.changes dpkg-buildpackage: info: source package dialign-t dpkg-buildpackage: info: source version 1.0.2-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_clean -O--sourcedirectory=/build/dialign-t-1.0.2/source cd source && make -j15 clean make[1]: Entering directory '/build/dialign-t-1.0.2/source' rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx make[1]: Leaving directory '/build/dialign-t-1.0.2/source' dh_autoreconf_clean -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_clean -O--sourcedirectory=/build/dialign-t-1.0.2/source debian/rules binary dh binary --sourcedirectory=/build/dialign-t-1.0.2/source dh_update_autotools_config -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_autoreconf -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_configure -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_build -O--sourcedirectory=/build/dialign-t-1.0.2/source cd source && make -j15 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dialign-t-1.0.2/source' gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o museq.o museq.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o parameters.o parameters.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o io.o io.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o diag.o diag.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o alig.o alig.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o assemble.o assemble.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o prob.o prob.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o orf.o orf.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o translate.o translate.c museq.c: In function 'main': museq.c:168:2: warning: implicit declaration of function 'free_diag'; did you mean 'free_diag_col'? [-Wimplicit-function-declaration] 168 | free_diag(adcol.diags[i]); | ^~~~~~~~~ | free_diag_col museq.c:278:27: warning: implicit declaration of function 'free_alignment' [-Wimplicit-function-declaration] 278 | if(! para->FAST_MODE) free_alignment(algn); | ^~~~~~~~~~~~~~ diag.c:1456:3: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); | ^~~~~~~~~~~~~~~~ alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ alig.c:13:20: warning: inline function 'calc_weight' declared but never defined 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, | ^~~~~~~~~~~ io.c: In function 'read_anchors': io.c:535:23: warning: format '%li' expects argument of type 'long int *', but argument 3 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:27: warning: format '%li' expects argument of type 'long int *', but argument 4 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:31: warning: format '%li' expects argument of type 'long int *', but argument 5 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:35: warning: format '%li' expects argument of type 'long int *', but argument 6 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:39: warning: format '%li' expects argument of type 'long int *', but argument 7 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c: In function 'read_scr_matrix': io.c:270:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 270 | fscanf( fp, "%i", &is); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:282:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | fscanf(fp, "%s\n", rline); | ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function 'read_diag_prob_dist': io.c:371:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); | ^~~~~~~~ assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, | ^~~~~~~~~~~~~~~~~ assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ rm -f ./museq gcc -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ -pipe -Wall -lm -Wl,-z,relro -Wl,-z,now mv museq dialign-tx make[1]: Leaving directory '/build/dialign-t-1.0.2/source' dh_auto_test -O--sourcedirectory=/build/dialign-t-1.0.2/source create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_prep -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_install -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_install -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installdocs -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installchangelogs -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installman -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installsystemduser -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_perl -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_link -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_strip_nondeterminism -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_compress -O--sourcedirectory=/build/dialign-t-1.0.2/source debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/dialign-t-1.0.2' dh_fixperms chmod 644 /build/dialign-t-1.0.2/debian/dialign-tx-data/usr/share/dialign-tx/* make[1]: Leaving directory '/build/dialign-t-1.0.2' dh_fixperms -O--sourcedirectory=/build/dialign-t-1.0.2/source -Ndialign-tx-data dh_missing -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_dwz -a -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_strip -a -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_makeshlibs -a -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_shlibdeps -a -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installdeb -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_gencontrol -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_md5sums -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_builddeb -O--sourcedirectory=/build/dialign-t-1.0.2/source dpkg-deb: building package 'dialign-tx-data' in '../dialign-tx-data_1.0.2-13_all.deb'. dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-13_amd64.deb'. dpkg-deb: building package 'dialign-tx-dbgsym' in '../dialign-tx-dbgsym_1.0.2-13_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dialign-t_1.0.2-13_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19521 and its subdirectories I: Current time: Sun Jan 16 05:54:40 -12 2022 I: pbuilder-time-stamp: 1642355680 Sun Jan 16 17:54:41 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sun Jan 16 17:54:41 UTC 2022 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sun Jan 16 17:55:14 UTC 2022 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sun Jan 16 17:55:14 UTC 2022 I: dialign-t_1.0.2-13_amd64.changes: Format: 1.8 Date: Thu, 23 Jul 2020 00:11:05 +0200 Source: dialign-t Binary: dialign-tx dialign-tx-data dialign-tx-dbgsym Architecture: all amd64 Version: 1.0.2-13 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: dialign-tx - Segment-based multiple sequence alignment dialign-tx-data - Segment-based multiple sequence alignment (data files) Closes: 957131 Changes: dialign-t (1.0.2-13) unstable; urgency=medium . * Team upload. * Added patch to fix FTBFS with Gcc 10. (Closes: #957131) * Moved watch link to https://. * Fixed spelling error reported by lintian in README.Debian. * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). Checksums-Sha1: 93bfe19f07b1b637415a287c2d9a5c71882ba186 5318 dialign-t_1.0.2-13_amd64.buildinfo 34339e415d043aee45ce42bbef9866ad16b85609 870804 dialign-tx-data_1.0.2-13_all.deb 3206148b3ac9e59636d5ffbd23b52443f3749128 155236 dialign-tx-dbgsym_1.0.2-13_amd64.deb d2e4f376e87a141adee981f562c58f98ade52be5 82156 dialign-tx_1.0.2-13_amd64.deb Checksums-Sha256: 344430d3c3e6f70792a73f5273fe4254f097941c569f40f8bd14bbb2159319bc 5318 dialign-t_1.0.2-13_amd64.buildinfo fe88f9dfcdd96b91613b5814a7c0b6c554d8cb865be2703cbc803c45605660d3 870804 dialign-tx-data_1.0.2-13_all.deb 259c88a1417e67e0a9b4c7a731c18bf58ca14dbdb120a132366b9ee3cf9a9752 155236 dialign-tx-dbgsym_1.0.2-13_amd64.deb 469507a436f1d7cfd4f6207a76942dbde7d39376026fdac657d28f127b537bbe 82156 dialign-tx_1.0.2-13_amd64.deb Files: e0f22e0e152d01e4b260506791008430 5318 science optional dialign-t_1.0.2-13_amd64.buildinfo 106dbb5728cb8c9ade51c030580d1e5c 870804 science optional dialign-tx-data_1.0.2-13_all.deb eddc67237308c9abc51cffd8fa3a4e9b 155236 debug optional dialign-tx-dbgsym_1.0.2-13_amd64.deb fc322ce7073095ee5faa2bffe33a8dd4 82156 science optional dialign-tx_1.0.2-13_amd64.deb Sun Jan 16 17:55:20 UTC 2022 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.NV1BK4GDLY/dialign-t_1.0.2-13.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.NV1BK4GDLY/dialign-t_1.0.2-13.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.NV1BK4GDLY/dialign-t_1.0.2-13.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.NV1BK4GDLY/b1/dialign-t_1.0.2-13_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.NV1BK4GDLY/b2/dialign-t_1.0.2-13_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.231s) 1.231s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.036s) 0.036s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Jan 16 17:58:27 UTC 2022 I: found no differences in the changes files, and a .buildinfo file also exists. Sun Jan 16 17:58:27 UTC 2022 I: dialign-t from bullseye built successfully and reproducibly on amd64. Sun Jan 16 17:58:37 UTC 2022 I: Submitting .buildinfo files to external archives: Sun Jan 16 17:58:37 UTC 2022 I: Submitting 8.0K b1/dialign-t_1.0.2-13_amd64.buildinfo.asc Sun Jan 16 17:58:41 UTC 2022 I: Submitting 8.0K b2/dialign-t_1.0.2-13_amd64.buildinfo.asc Sun Jan 16 17:58:50 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jan 16 17:58:50 UTC 2022 I: Done submitting .buildinfo files. Sun Jan 16 17:58:50 UTC 2022 I: Removing signed dialign-t_1.0.2-13_amd64.buildinfo.asc files: removed './b1/dialign-t_1.0.2-13_amd64.buildinfo.asc' removed './b2/dialign-t_1.0.2-13_amd64.buildinfo.asc'