Sun Dec 26 01:23:06 UTC 2021 I: starting to build cyvcf2/bullseye/amd64 on jenkins on '2021-12-26 01:23' Sun Dec 26 01:23:06 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_29/30898/console.log Sun Dec 26 01:23:06 UTC 2021 I: Downloading source for bullseye/cyvcf2=0.30.4-4 --2021-12-26 01:23:06-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/cyvcf2/cyvcf2_0.30.4-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2289 (2.2K) Saving to: ‘cyvcf2_0.30.4-4.dsc’ 0K .. 100% 141M=0s 2021-12-26 01:23:06 (141 MB/s) - ‘cyvcf2_0.30.4-4.dsc’ saved [2289/2289] Sun Dec 26 01:23:07 UTC 2021 I: cyvcf2_0.30.4-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cyvcf2 Binary: python3-cyvcf2 Architecture: any Version: 0.30.4-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Liubov Chuprikova , Nilesh Patra Homepage: https://github.com/brentp/cyvcf2 Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/cyvcf2 Vcs-Git: https://salsa.debian.org/med-team/cyvcf2.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, zlib1g-dev, cython3, python3-setuptools, python3-all-dev, python3-numpy, python3-coloredlogs, python3-click, python3-nose, libssl-dev, libcurl4-gnutls-dev | libcurl4-openssl-dev, libhts-dev, libbz2-dev, help2man Package-List: python3-cyvcf2 deb python optional arch=any Checksums-Sha1: 183ada4cab410467d0f22e8516645b5c8d5a613e 405456 cyvcf2_0.30.4.orig.tar.gz 295e9dda394ced92c46a132e83d891f62c87e3c5 6332 cyvcf2_0.30.4-4.debian.tar.xz Checksums-Sha256: 28cfc77ece74abbbdc0c999f5ec47c063cba9741d127c9e0e280e74f81aa933a 405456 cyvcf2_0.30.4.orig.tar.gz 4ff7f4941547103e4864e23e22e9326f7f0af827c3779bc175a49556f507476a 6332 cyvcf2_0.30.4-4.debian.tar.xz Files: 4245da7a9245241660472c77ace5e5e6 405456 cyvcf2_0.30.4.orig.tar.gz 535ddfb6b230dbe2cf28157d6443d0da 6332 cyvcf2_0.30.4-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmAamBEUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFz9A//eso0omkqCAvJ8jfYOakMwwRzP5T5 qWaZjNFERAx5+vav2c1MCNuW2bdFsUtNPHv/7QUWLiqoNAIgeE1XBpNwvTfRyZ29 kQZhwKI//TEcUKbLCiR+gfXYjxIGOEB7Fd5MnXKLdhGI8XaufCIP4o6lW/7KnZm9 SPwkkbnAiPT8BGZEd5l/58iP6dGyfXhnSGvOZ5Qi0mY66JwnDVdKgT9VdE+GjcOl DBJug/iX6GXmR2VImvPyp1+/BsaEy84gc0f/nl0Ii0EcaDgAYORToN76Ncl7ogGE anIAAqN1ExnV+KiGmuUqZ7quJmRCZ30aHjWSSsIEKM13lqVrv3/qdOBRdNlLBnYT h7MLqphBFKg7e8TymBp9YYC5k+3heVGdukKGNRnrzF5MvoSUSg1tqly8ElS7eNm7 UGIGU7iIGSN2Iz50xc6OWaERKk1A9qWuo/j8EY4XBY6Bxv2TGbwZkHzfzNPD20NO eAlLLCJEto2mzlu+SDAoqx7WP6Gn1BTXqzWmS2tzBDwUc8lFcR4F2lScSTHrWYwK XZMSrpCA7VFKcXMIhtSQmBG9C6bbcDQ6RWwli+c8IjYn/KpKXtiK/Fz83V00jSPA m71qAZwBEnNQA3tIFkLlX1Lj3vYA5l1bTOSAjon1sHUutzxMpIF788GbuktdXTZ2 KmZdE5n6HjtiqSg= =iRys -----END PGP SIGNATURE----- Sun Dec 26 01:23:07 UTC 2021 I: Checking whether the package is not for us Sun Dec 26 01:23:07 UTC 2021 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Dec 26 01:23:07 UTC 2021 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Dec 26 01:24:30 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Dec 25 13:23:07 -12 2021 I: pbuilder-time-stamp: 1640481787 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cyvcf2_0.30.4-4.dsc] I: copying [./cyvcf2_0.30.4.orig.tar.gz] I: copying [./cyvcf2_0.30.4-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.YBfnfNXv/trustedkeys.kbx': General error gpgv: Signature made Wed Feb 3 00:33:21 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cyvcf2_0.30.4-4.dsc dpkg-source: info: extracting cyvcf2 in cyvcf2-0.30.4 dpkg-source: info: unpacking cyvcf2_0.30.4.orig.tar.gz dpkg-source: info: unpacking cyvcf2_0.30.4-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_htslib_link_dependency.patch dpkg-source: info: applying 188.patch dpkg-source: info: applying i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2868331/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='80eedb3e99b94069aa0554e32142d2c5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2868331' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.wGeawWE4kY/pbuilderrc_m7kG --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.wGeawWE4kY/b1 --logfile b1/build.log cyvcf2_0.30.4-4.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 20 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/2868331/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, zlib1g-dev, cython3, python3-setuptools, python3-all-dev, python3-numpy, python3-coloredlogs, python3-click, python3-nose, libssl-dev, libcurl4-gnutls-dev | libcurl4-openssl-dev, libhts-dev, libbz2-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-coloredlogs; however: Package python3-coloredlogs is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-openssl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl4-openssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhts-dev{a} libhts3{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libldap-2.4-2{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-click{a} python3-colorama{a} python3-coloredlogs{a} python3-dev{a} python3-distutils{a} python3-humanfriendly{a} python3-lib2to3{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-pkg-resources{a} python3-setuptools{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 47.6 MB of archives. After unpacking 176 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 cython3 amd64 0.29.21-3+b1 [1312 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 help2man amd64 1.48.1 [190 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libbz2-dev amd64 1.0.8-4 [30.1 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u1 [338 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libcurl4-gnutls-dev amd64 7.74.0-1.3+deb11u1 [429 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libdeflate-dev amd64 1.7-1 [46.9 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2 [140 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 liblzma-dev amd64 5.2.5-2 [229 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libhts-dev amd64 1.11-4 [3858 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libpython3-all-dev amd64 3.9.2-3 [1068 B] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libssl-dev amd64 1.1.1k-1+deb11u1 [1810 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 80 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 python3-all-dev amd64 3.9.2-3 [1064 B] Get: 83 http://deb.debian.org/debian bullseye/main amd64 python3-colorama all 0.4.4-1 [28.5 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 python3-click all 7.1.2-1 [75.7 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 python3-humanfriendly all 9.1-1 [84.6 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 python3-coloredlogs all 7.3-2 [28.0 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 python3-nose all 1.3.7-7 [133 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 47.6 MB in 1s (44.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... 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Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20537 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... 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Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20958 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../06-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. 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Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../20-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../21-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../22-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../23-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... 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Preparing to unpack .../32-libblas3_3.9.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.9.0-3) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../33-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../34-libbz2-dev_1.0.8-4_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../35-libsasl2-modules-db_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../36-libsasl2-2_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../37-libldap-2.4-2_2.4.57+dfsg-3_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../38-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../39-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../40-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../41-libssh2-1_1.9.0-2_amd64.deb ... Unpacking libssh2-1:amd64 (1.9.0-2) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../42-libcurl3-gnutls_7.74.0-1.3+deb11u1_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u1) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../43-libcurl4-gnutls-dev_7.74.0-1.3+deb11u1_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (7.74.0-1.3+deb11u1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../44-libdeflate0_1.7-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.7-1) ... Selecting previously unselected package libdeflate-dev:amd64. Preparing to unpack .../45-libdeflate-dev_1.7-1_amd64.deb ... Unpacking libdeflate-dev:amd64 (1.7-1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../46-libexpat1-dev_2.2.10-2_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.10-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../47-libgfortran5_10.2.1-6_amd64.deb ... Unpacking libgfortran5:amd64 (10.2.1-6) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../48-libhts3_1.11-4_amd64.deb ... Unpacking libhts3:amd64 (1.11-4) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../49-liblzma-dev_5.2.5-2_amd64.deb ... Unpacking liblzma-dev:amd64 (5.2.5-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../50-zlib1g-dev_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Selecting previously unselected package libhts-dev:amd64. Preparing to unpack .../51-libhts-dev_1.11-4_amd64.deb ... Unpacking libhts-dev:amd64 (1.11-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../52-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../53-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../54-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../55-liblapack3_3.9.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.9.0-3) ... Selecting previously unselected package libpython3.9:amd64. Preparing to unpack .../56-libpython3.9_3.9.2-1_amd64.deb ... Unpacking libpython3.9:amd64 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:amd64. Preparing to unpack .../57-libpython3.9-dev_3.9.2-1_amd64.deb ... Unpacking libpython3.9-dev:amd64 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../58-libpython3-dev_3.9.2-3_amd64.deb ... Unpacking libpython3-dev:amd64 (3.9.2-3) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../59-libpython3-all-dev_3.9.2-3_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.9.2-3) ... Selecting previously unselected package libssl-dev:amd64. 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Preparing to unpack .../72-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.2.10-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libssl-dev:amd64 (1.1.1k-1+deb11u1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up liblzma-dev:amd64 (5.2.5-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libdeflate-dev:amd64 (1.7-1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libbz2-dev:amd64 (1.0.8-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u1) ... Setting up libcurl4-gnutls-dev:amd64 (7.74.0-1.3+deb11u1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.48.1) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:amd64 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:amd64 (1.11-4) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-humanfriendly (9.1-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-coloredlogs (7.3-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-colorama (0.4.4-1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-click (7.1.2-1) ... Setting up python3-nose (1.3.7-7) ... Setting up libpython3-all-dev:amd64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-all-dev (3.9.2-3) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/cyvcf2-0.30.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cyvcf2_0.30.4-4_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.30.4-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from cyvcf2-0.30.4/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/cyvcf2-0.30.4' dh_clean rm -rf cyvcf2.egg-info cyvcf2/cyvcf2.c __o.vcf find . -name "*.so" -delete make[1]: Leaving directory '/build/cyvcf2-0.30.4' debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 creating /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_reader.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_writer.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_hemi.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_cli.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/__init__.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests running egg_info creating cyvcf2.egg-info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt writing manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'htslib/*.c' warning: no files found matching 'htslib/*.h' warning: no files found matching 'htslib/htslib/*.h' warning: no files found matching 'htslib/cram/*.c' warning: no files found matching 'htslib/cram/*.h' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/tests/bug.vcf.gz -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/decomposed.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/empty.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/issue_44.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/no-seq-len.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/no-seq-names.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/o.vcf.gz -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/seg.vcf.gz -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-alt-repr.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-diff.csi -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-format-string.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-haploidX.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-hemi.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-invalid-header.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.bug.117.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.comp_het.3.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.snpeff.bcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.snpeff.bcf.csi -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.snpeff.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.vcf.gz -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.vcf.gz.tbi -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_gt_bases.vcf.gz -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests running build_ext building 'cyvcf2.cyvcf2' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/cyvcf2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/cyvcf2-0.30.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -Ihtslib -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c cyvcf2/cyvcf2.c -o build/temp.linux-x86_64-3.9/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from cyvcf2/cyvcf2.c:651: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ cyvcf2/cyvcf2.c: In function ‘__pyx_pf_6cyvcf2_6cyvcf2_3VCF_8seqnames___get__’: cyvcf2/cyvcf2.c:14374:18: warning: assignment to ‘char **’ from incompatible pointer type ‘const char **’ [-Wincompatible-pointer-types] 14374 | __pyx_v_cnames = bcf_hdr_seqnames(__pyx_v_self->hdr, (&__pyx_v_n)); | ^ cyvcf2/cyvcf2.c:14483:22: warning: assignment to ‘char **’ from incompatible pointer type ‘const char **’ [-Wincompatible-pointer-types] 14483 | __pyx_v_cnames = bcf_index_seqnames(__pyx_v_self->hidx, __pyx_v_self->hdr, (&__pyx_v_n)); | ^ cyvcf2/cyvcf2.c:14566:22: warning: assignment to ‘char **’ from incompatible pointer type ‘const char **’ [-Wincompatible-pointer-types] 14566 | __pyx_v_cnames = tbx_seqnames(__pyx_v_self->idx, (&__pyx_v_n)); | ^ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/cyvcf2-0.30.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -Ihtslib -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c cyvcf2/helpers.c -o build/temp.linux-x86_64-3.9/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/cyvcf2-0.30.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/cyvcf2/cyvcf2.o build/temp.linux-x86_64-3.9/cyvcf2/helpers.o -lz -lbz2 -llzma -lcurl -lssl -lhts -lcrypt -o /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.cpython-39-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/cyvcf2-0.30.4' dh_auto_test I: pybuild base:232: cd /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build; python3.9 -m nose -v cyvcf2.tests.test_cli.test_version ... ok make sure that we are getting the correct gt_types ... ok cyvcf2.tests.test_reader.test_init ... ok cyvcf2.tests.test_reader.test_type ... ok cyvcf2.tests.test_reader.test_format_str ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_missing_samples ... ok cyvcf2.tests.test_reader.test_ibd ... ok cyvcf2.tests.test_reader.test_relatedness ... tested: 44 variants out of 115 ok cyvcf2.tests.test_reader.test_pls ... ok cyvcf2.tests.test_reader.test_gt_alt_freqs ... ok cyvcf2.tests.test_reader.test_str ... ok cyvcf2.tests.test_reader.test_region ... ok cyvcf2.tests.test_reader.test_empty_info ... ok cyvcf2.tests.test_reader.test_phases ... ok cyvcf2.tests.test_reader.test_bad_init ... [E::hts_open_format] Failed to open file "XXXXX" : No such file or directory ok cyvcf2.tests.test_reader.test_samples ... ok cyvcf2.tests.test_reader.test_next ... ok cyvcf2.tests.test_reader.test_variant ... ok cyvcf2.tests.test_reader.test_info_dict ... ok cyvcf2.tests.test_reader.test_attrs ... ok cyvcf2.tests.test_reader.test_empty ... ok cyvcf2.tests.test_reader.test_format_field ... ok cyvcf2.tests.test_reader.test_writer_from_string ... [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_writer ... ok cyvcf2.tests.test_reader.test_add_info_to_header ... ok cyvcf2.tests.test_reader.test_read_flag ... ok cyvcf2.tests.test_reader.test_add_flag ... ok cyvcf2.tests.test_reader.test_constants ... ok cyvcf2.tests.test_reader.test_add_filter_to_header ... ok cyvcf2.tests.test_reader.test_seqnames ... ok cyvcf2.tests.test_reader.test_different_index ... ok cyvcf2.tests.test_reader.test_var_type ... ok cyvcf2.tests.test_reader.test_header_info ... ok cyvcf2.tests.test_reader.test_snpeff_header ... ok cyvcf2.tests.test_reader.test_gt_types ... ok cyvcf2.tests.test_reader.test_raw_header ... ok cyvcf2.tests.test_reader.test_iterate ... ok cyvcf2.tests.test_reader.test_empty_call ... ok cyvcf2.tests.test_reader.test_haploid ... ok cyvcf2.tests.test_reader.test_diploid ... ok cyvcf2.tests.test_reader.test_format ... ok cyvcf2.tests.test_reader.test_header_stuff ... ok cyvcf2.tests.test_reader.test_bcf ... OK no intervals found for b'/build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf' at 1:69260-69438 ok cyvcf2.tests.test_reader.test_issue12 ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok Ensure gt_bases works with more complex base representations. ... ok cyvcf2.tests.test_reader.test_set_format_float ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_set_format_int_a ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_set_format_int_b ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_set_format_int_c ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok test that we can handle multiple (in this case 3) values per sample ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_set_format_str_bytes_second_longer ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_set_format_str_bytes_first_longer ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_set_format_str_bytes_number3 ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_set_gts ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_info_del ... ok cyvcf2.tests.test_reader.test_filter_id ... ok cyvcf2.tests.test_reader.test_access_gts ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_access_genotype ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_access_genotype_array ... [W::vcf_parse] Contig '7' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_alt_homozygous_gt ... ok cyvcf2.tests.test_reader.test_write_missing_contig ... [W::vcf_parse] Contig '1' is not defined in the header. (Quick workaround: index the file with tabix.) ok cyvcf2.tests.test_reader.test_set_samples ... ok cyvcf2.tests.test_reader.test_hrec ... ok cyvcf2.tests.test_reader.test_issue44 ... ok cyvcf2.tests.test_reader.test_id_field_updates ... ok cyvcf2.tests.test_reader.test_set_pos ... ok cyvcf2.tests.test_reader.test_set_chrom_when_contig_not_in_header ... [cyvcf2]: added new contig NEW to headerok cyvcf2.tests.test_reader.test_set_chrom_after_contig_is_added_to_header ... ok cyvcf2.tests.test_reader.test_set_qual ... ok cyvcf2.tests.test_reader.test_strict_gt_option_flag ... ok cyvcf2.tests.test_reader.test_alt_repr ... ok cyvcf2.tests.test_reader.test_closed_iter ... ok cyvcf2.tests.test_reader.test_issue72 ... ok cyvcf2.tests.test_reader.test_is_transition ... ok cyvcf2.tests.test_reader.test_decomposed ... ok cyvcf2.tests.test_reader.test_fd ... ok cyvcf2.tests.test_reader.test_set_reference ... ok cyvcf2.tests.test_reader.test_set_alternates ... ok cyvcf2.tests.test_reader.test_no_seqlen ... ok cyvcf2.tests.test_reader.test_set_unknown_format ... ok cyvcf2.tests.test_reader.test_invalid_header ... [E::bcf_hdr_add_sample_len] Empty sample name: trailing spaces/tabs in the header line? ok cyvcf2.tests.test_writer.TestFileModeInference.test_defaultModeWithBcfFnameAndUncompressedMode_returnsUncompressedBcf ... ok cyvcf2.tests.test_writer.TestFileModeInference.test_defaultModeWithBcfFname_returnsCompressedBcf ... ok cyvcf2.tests.test_writer.TestFileModeInference.test_defaultModeWithCompressedBcfFname_returnsCompressedBcf ... ok cyvcf2.tests.test_writer.TestFileModeInference.test_defaultModeWithCompressedVcfFname_returnsCompressedVcf ... ok cyvcf2.tests.test_writer.TestFileModeInference.test_defaultModeWithHandle_returnsUncompressedVcf ... ok cyvcf2.tests.test_writer.TestFileModeInference.test_defaultModeWithIntFname_returnsUncompressedVcf ... ok cyvcf2.tests.test_writer.TestFileModeInference.test_defaultModeWithNonVcfName_returnsUncompressedVcf ... ok cyvcf2.tests.test_writer.TestFileModeInference.test_defaultModeWithPosixPath_returnsUncompressedVcf ... ok cyvcf2.tests.test_writer.TestFileModeInference.test_defaultModeWithStdOut_returnsUncompressedVcf ... ok cyvcf2.tests.test_writer.TestFileModeInference.test_defaultModeWithVcfFname_returnsUncompressedVcf ... ok cyvcf2.tests.test_writer.TestFileModeInference.test_explicitMode_doesNotInferFromFname ... ok ---------------------------------------------------------------------- Ran 92 tests in 1.274s OK # clean up after testing find . -name out.vcf -delete make[1]: Leaving directory '/build/cyvcf2-0.30.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/cyvcf2-0.30.4/debian/python3-cyvcf2 running install running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'htslib/*.c' warning: no files found matching 'htslib/*.h' warning: no files found matching 'htslib/htslib/*.h' warning: no files found matching 'htslib/cram/*.c' warning: no files found matching 'htslib/cram/*.h' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9 creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.cpython-39-x86_64-linux-gnu.so -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/relatedness.h -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/helpers.h -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/helpers.c -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__init__.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__main__.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cli.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__init__.py to __init__.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__main__.py to __main__.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/cli.py to cli.cpython-39.pyc running install_egg_info Copying cyvcf2.egg-info to /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2-0.30.4.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/cyvcf2-0.30.4' dh_numpy3 dh_install make[1]: Leaving directory '/build/cyvcf2-0.30.4' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/cyvcf2-0.30.4' PATH=$PATH:/build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/bin \ PYTHONPATH=/build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/ \ help2man --no-info \ --name="fast parsing of VCF and BCF including region-queries" \ --version-string=0.30.4 cyvcf2 > debian/cyvcf2.1 dh_installman make[1]: Leaving directory '/build/cyvcf2-0.30.4' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-cyvcf2: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-cyvcf2: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-cyvcf2: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-cyvcf2: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.30.4-4_amd64.deb'. dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.30.4-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../cyvcf2_0.30.4-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from cyvcf2-0.30.4/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2868331 and its subdirectories I: Current time: Sat Dec 25 13:24:30 -12 2021 I: pbuilder-time-stamp: 1640481870 Sun Dec 26 01:24:30 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sun Dec 26 01:24:30 UTC 2021 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sun Dec 26 01:27:52 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sun Dec 26 01:27:52 UTC 2021 I: cyvcf2_0.30.4-4_amd64.changes: Format: 1.8 Date: Wed, 03 Feb 2021 17:57:14 +0530 Source: cyvcf2 Binary: python3-cyvcf2 python3-cyvcf2-dbgsym Architecture: amd64 Version: 0.30.4-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-cyvcf2 - VCF parser based on htslib (Python 3) Changes: cyvcf2 (0.30.4-4) unstable; urgency=medium . * Disable failing test on i386 using dpkg-architecture Checksums-Sha1: 274ec911b57f7bccbcd0fbdf02a1a8061b5f75cd 7107 cyvcf2_0.30.4-4_amd64.buildinfo 1535a8d1040ad9732532254d12fb037c4150c030 1157844 python3-cyvcf2-dbgsym_0.30.4-4_amd64.deb f2dfc170e9ae3ca3c452b945a935578d9d0b8fb2 806280 python3-cyvcf2_0.30.4-4_amd64.deb Checksums-Sha256: 267210d74783568634e3619a3b2af815d8cf464ba71d18ee153be25937eeefc0 7107 cyvcf2_0.30.4-4_amd64.buildinfo 1ea4667fa946cbbc2ac624b4225c7c7ad8a38a1a9671bd2792a0d4d5ec7ee4c7 1157844 python3-cyvcf2-dbgsym_0.30.4-4_amd64.deb 09a7434fa3c7f2ddcadfa9ee0522938f528aeae5988ead8a1ee7698e5cb8bc7b 806280 python3-cyvcf2_0.30.4-4_amd64.deb Files: 7fa04e621115aa2a6209c4fe51c5586e 7107 science optional cyvcf2_0.30.4-4_amd64.buildinfo ecc7fac7617561e7a023ad7745bf8102 1157844 debug optional python3-cyvcf2-dbgsym_0.30.4-4_amd64.deb 07e4735a21f4d6b622c940d33a49b784 806280 python optional python3-cyvcf2_0.30.4-4_amd64.deb Sun Dec 26 01:27:54 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.wGeawWE4kY/cyvcf2_0.30.4-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.wGeawWE4kY/cyvcf2_0.30.4-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.wGeawWE4kY/cyvcf2_0.30.4-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.wGeawWE4kY/b1/cyvcf2_0.30.4-4_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.wGeawWE4kY/b2/cyvcf2_0.30.4-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.372s) 0.372s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.046s) 0.046s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Dec 26 01:27:55 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Sun Dec 26 01:27:55 UTC 2021 I: cyvcf2 from bullseye built successfully and reproducibly on amd64. Sun Dec 26 01:27:56 UTC 2021 I: Submitting .buildinfo files to external archives: Sun Dec 26 01:27:56 UTC 2021 I: Submitting 8.0K b1/cyvcf2_0.30.4-4_amd64.buildinfo.asc Sun Dec 26 01:27:58 UTC 2021 I: Submitting 8.0K b2/cyvcf2_0.30.4-4_amd64.buildinfo.asc Sun Dec 26 01:27:59 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Dec 26 01:27:59 UTC 2021 I: Done submitting .buildinfo files. Sun Dec 26 01:27:59 UTC 2021 I: Removing signed cyvcf2_0.30.4-4_amd64.buildinfo.asc files: removed './b1/cyvcf2_0.30.4-4_amd64.buildinfo.asc' removed './b2/cyvcf2_0.30.4-4_amd64.buildinfo.asc'