Fri Jan 6 00:57:34 UTC 2023 I: starting to build busco/bullseye/amd64 on jenkins on '2023-01-06 00:57'
Fri Jan 6 00:57:34 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_19/3835/console.log
Fri Jan 6 00:57:34 UTC 2023 I: Downloading source for bullseye/busco=5.0.0-1
--2023-01-06 00:57:34-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/busco/busco_5.0.0-1.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 1979 (1.9K) [text/prs.lines.tag]
Saving to: ‘busco_5.0.0-1.dsc’
0K . 100% 168M=0s
2023-01-06 00:57:34 (168 MB/s) - ‘busco_5.0.0-1.dsc’ saved [1979/1979]
Fri Jan 6 00:57:34 UTC 2023 I: busco_5.0.0-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: busco
Binary: busco
Architecture: all
Version: 5.0.0-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Nilesh Patra <npatra974@gmail.com>
Homepage: https://gitlab.com/ezlab/busco
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/busco
Vcs-Git: https://salsa.debian.org/med-team/busco.git
Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools
Package-List:
busco deb science optional arch=all
Checksums-Sha1:
d751691a333de7d5aa44ddc109e4f2a83da8f441 372913 busco_5.0.0.orig.tar.gz
968fa298f4da9261647291e459b21585a489b7d5 4196 busco_5.0.0-1.debian.tar.xz
Checksums-Sha256:
0d4ff765a751a5d22771bece2c1992b1e780da57504501a82752f307be86dcef 372913 busco_5.0.0.orig.tar.gz
e3138a76e4ad7633f897656abe2ce90cd731f09484984b4fd41ef144962813f3 4196 busco_5.0.0-1.debian.tar.xz
Files:
0d33a28023c7267e79ab160a6a23c018 372913 busco_5.0.0.orig.tar.gz
7e68e2f4da454dba359d2525b884be94 4196 busco_5.0.0-1.debian.tar.xz
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Fri Jan 6 00:57:34 UTC 2023 I: Checking whether the package is not for us
Fri Jan 6 00:57:34 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net.
Fri Jan 6 00:57:34 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net.
Fri Jan 6 00:59:09 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Jan 5 12:57:38 -12 2023
I: pbuilder-time-stamp: 1672966658
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [busco_5.0.0-1.dsc]
I: copying [./busco_5.0.0.orig.tar.gz]
I: copying [./busco_5.0.0-1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.r1X4X6N_/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 27 23:32:31 2021 -12
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./busco_5.0.0-1.dsc
dpkg-source: info: extracting busco in busco-5.0.0
dpkg-source: info: unpacking busco_5.0.0.orig.tar.gz
dpkg-source: info: unpacking busco_5.0.0-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3597795/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15'
DISTRIBUTION='bullseye'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='361e5d21224941da8cececf7e05b41cc'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='3597795'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4S1gELad/pbuilderrc_shBg --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4S1gELad/b1 --logfile b1/build.log busco_5.0.0-1.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://78.137.99.97:3128'
I: uname -a
Linux ionos1-amd64 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 GNU/Linux
I: ls -l /bin
total 5476
-rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash
-rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 43936 Sep 23 2020 cat
-rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp
-rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod
-rwxr-xr-x 1 root root 72672 Sep 23 2020 chown
-rwxr-xr-x 1 root root 151168 Sep 23 2020 cp
-rwxr-xr-x 1 root root 125560 Dec 10 2020 dash
-rwxr-xr-x 1 root root 113664 Sep 23 2020 date
-rwxr-xr-x 1 root root 80968 Sep 23 2020 dd
-rwxr-xr-x 1 root root 93936 Sep 23 2020 df
-rwxr-xr-x 1 root root 147176 Sep 23 2020 dir
-rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg
lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
-rwxr-xr-x 1 root root 39712 Sep 23 2020 echo
-rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
-rwxr-xr-x 1 root root 39680 Sep 23 2020 false
-rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
-rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt
-rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount
-rwxr-xr-x 1 root root 203072 Nov 9 2020 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname
-rwxr-xr-x 1 root root 72840 Sep 23 2020 ln
-rwxr-xr-x 1 root root 56952 Feb 7 2020 login
-rwxr-xr-x 1 root root 147176 Sep 23 2020 ls
-rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk
-rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir
-rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod
-rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp
-rwxr-xr-x 1 root root 59632 Jan 20 2022 more
-rwsr-xr-x 1 root root 55528 Jan 20 2022 mount
-rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint
-rwxr-xr-x 1 root root 147080 Sep 23 2020 mv
lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd
lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash
-rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink
-rwxr-xr-x 1 root root 72704 Sep 23 2020 rm
-rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir
-rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 122224 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Dec 20 21:24 sh -> dash
-rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep
-rwxr-xr-x 1 root root 84928 Sep 23 2020 stty
-rwsr-xr-x 1 root root 71912 Jan 20 2022 su
-rwxr-xr-x 1 root root 39744 Sep 23 2020 sync
-rwxr-xr-x 1 root root 531928 Feb 16 2021 tar
-rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 101408 Sep 23 2020 touch
-rwxr-xr-x 1 root root 39680 Sep 23 2020 true
-rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server
-rwsr-xr-x 1 root root 35040 Jan 20 2022 umount
-rwxr-xr-x 1 root root 39744 Sep 23 2020 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir
-rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl
lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/3597795/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19704 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 48 newly installed, 0 to remove and 0 not upgraded.
Need to get 24.6 MB of archives. After unpacking 92.4 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB]
Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB]
Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB]
Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB]
Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB]
Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB]
Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB]
Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB]
Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB]
Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB]
Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB]
Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB]
Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB]
Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB]
Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB]
Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB]
Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB]
Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB]
Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB]
Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB]
Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB]
Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB]
Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB]
Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB]
Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB]
Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB]
Get: 29 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB]
Get: 30 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB]
Get: 31 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 32 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 33 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB]
Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 36 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB]
Get: 37 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB]
Get: 38 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB]
Get: 39 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u3 [693 kB]
Get: 40 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB]
Get: 41 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 42 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 43 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB]
Get: 44 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB]
Get: 45 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB]
Get: 46 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB]
Get: 47 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB]
Get: 48 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB]
Fetched 24.6 MB in 1s (28.0 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
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(Reading database ... 19704 files and directories currently installed.)
Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_amd64.deb ...
Unpacking bsdextrautils (2.36.1-8+deb11u1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ...
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I: Building the package
I: Running cd /build/busco-5.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../busco_5.0.0-1_source.changes
dpkg-buildpackage: info: source package busco
dpkg-buildpackage: info: source version 5.0.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Nilesh Patra <npatra974@gmail.com>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py clean
running clean
removing '/build/busco-5.0.0/.pybuild/cpython3_3.9/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/run_BUSCO.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/_version.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/__init__.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/ConfigManager.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/BuscoRunner.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/BuscoPlacer.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/BuscoLogger.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/BuscoDownloadManager.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/BuscoConfig.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/AutoLineage.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
copying src/busco/Actions.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco
creating /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis
copying src/busco/analysis/__init__.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis
copying src/busco/analysis/TranscriptomeAnalysis.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis
copying src/busco/analysis/GenomeAnalysis.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis
copying src/busco/analysis/GeneSetAnalysis.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis
copying src/busco/analysis/BuscoAnalysis.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis
copying src/busco/analysis/Analysis.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis
creating /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools
copying src/busco/busco_tools/sepp.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools
copying src/busco/busco_tools/prodigal.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools
copying src/busco/busco_tools/metaeuk.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools
copying src/busco/busco_tools/hmmer.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools
copying src/busco/busco_tools/blast.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools
copying src/busco/busco_tools/base.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools
copying src/busco/busco_tools/augustus.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools
copying src/busco/busco_tools/__init__.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools
copying src/busco/busco_tools/Toolset.py -> /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools
running build_scripts
creating build
creating build/scripts-3.9
copying and adjusting bin/busco -> build/scripts-3.9
changing mode of build/scripts-3.9/busco from 644 to 755
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:232: cd /build/busco-5.0.0/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/busco-5.0.0/debian/busco
running install
running build
running build_py
running build_scripts
running install_lib
creating /build/busco-5.0.0/debian/busco/usr
creating /build/busco-5.0.0/debian/busco/usr/lib
creating /build/busco-5.0.0/debian/busco/usr/lib/python3.9
creating /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages
creating /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
creating /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/__pycache__
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/__pycache__/_version.cpython-39.pyc -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/__pycache__
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/__pycache__/__init__.cpython-39.pyc -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/__pycache__
creating /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools
creating /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/__pycache__
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools/__pycache__/__init__.cpython-39.pyc -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/__pycache__
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools/Toolset.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools/__init__.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools/augustus.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools/base.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools/blast.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools/hmmer.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools/metaeuk.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools/prodigal.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/busco_tools/sepp.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools
creating /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis
creating /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis/__pycache__
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis/__pycache__/__init__.cpython-39.pyc -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis/__pycache__
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis/Analysis.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis/BuscoAnalysis.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis/GeneSetAnalysis.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis/GenomeAnalysis.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis/TranscriptomeAnalysis.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/analysis/__init__.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/Actions.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/AutoLineage.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/BuscoConfig.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/BuscoDownloadManager.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/BuscoLogger.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/BuscoPlacer.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/BuscoRunner.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/ConfigManager.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/__init__.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/_version.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
copying /build/busco-5.0.0/.pybuild/cpython3_3.9/build/busco/run_BUSCO.py -> /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/Toolset.py to Toolset.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/augustus.py to augustus.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/base.py to base.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/blast.py to blast.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/hmmer.py to hmmer.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/metaeuk.py to metaeuk.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/prodigal.py to prodigal.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/busco_tools/sepp.py to sepp.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis/Analysis.py to Analysis.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis/BuscoAnalysis.py to BuscoAnalysis.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis/GeneSetAnalysis.py to GeneSetAnalysis.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis/GenomeAnalysis.py to GenomeAnalysis.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis/TranscriptomeAnalysis.py to TranscriptomeAnalysis.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/analysis/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/Actions.py to Actions.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/AutoLineage.py to AutoLineage.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/BuscoConfig.py to BuscoConfig.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/BuscoDownloadManager.py to BuscoDownloadManager.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/BuscoLogger.py to BuscoLogger.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/BuscoPlacer.py to BuscoPlacer.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/BuscoRunner.py to BuscoRunner.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/ConfigManager.py to ConfigManager.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/_version.py to _version.cpython-39.pyc
byte-compiling /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/busco/run_BUSCO.py to run_BUSCO.cpython-39.pyc
running install_scripts
creating /build/busco-5.0.0/debian/busco/usr/bin
copying build/scripts-3.9/busco -> /build/busco-5.0.0/debian/busco/usr/bin
changing mode of /build/busco-5.0.0/debian/busco/usr/bin/busco to 755
running install_egg_info
Writing /build/busco-5.0.0/debian/busco/usr/lib/python3.9/dist-packages/BUSCO-5.0.0.egg-info
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'busco' in '../busco_5.0.0-1_all.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../busco_5.0.0-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3597795 and its subdirectories
I: Current time: Thu Jan 5 12:59:08 -12 2023
I: pbuilder-time-stamp: 1672966749
Fri Jan 6 00:59:09 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net.
Fri Jan 6 00:59:09 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net.
Fri Jan 6 01:01:12 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net.
Fri Jan 6 01:01:12 UTC 2023 I: busco_5.0.0-1_amd64.changes:
Format: 1.8
Date: Thu, 28 Jan 2021 16:59:01 +0530
Source: busco
Binary: busco
Architecture: all
Version: 5.0.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Nilesh Patra <npatra974@gmail.com>
Description:
busco - benchmarking sets of universal single-copy orthologs
Changes:
busco (5.0.0-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.5.1 (routine-update)
Checksums-Sha1:
7beccc6596bcbac7da2f4487eabf901f93e77c49 61936 busco_5.0.0-1_all.deb
31669868b77e223e063783af738c8c38602fb5f1 5489 busco_5.0.0-1_amd64.buildinfo
Checksums-Sha256:
aef1c9edd5c743afac40adb7e1ceca5a4f37e7e8466ab6003d7c07ce1fb02da1 61936 busco_5.0.0-1_all.deb
d7476e94b98052bd33e7c591ddd0c1d688005e06f4fcaa7d17e7388e248cbe72 5489 busco_5.0.0-1_amd64.buildinfo
Files:
52cc86c46c319a3ce3c77435fe333d2b 61936 science optional busco_5.0.0-1_all.deb
bfaba49f133c7c5568d12da8b2a37778 5489 science optional busco_5.0.0-1_amd64.buildinfo
Fri Jan 6 01:01:18 UTC 2023 I: diffoscope 228 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4S1gELad/busco_5.0.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4S1gELad/busco_5.0.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4S1gELad/busco_5.0.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4S1gELad/b1/busco_5.0.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.4S1gELad/b2/busco_5.0.0-1_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 4.090s)
4.090s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.182s)
0.182s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Fri Jan 6 01:01:23 UTC 2023 I: diffoscope 228 found no differences in the changes files, and a .buildinfo file also exists.
Fri Jan 6 01:01:23 UTC 2023 I: busco from bullseye built successfully and reproducibly on amd64.
Fri Jan 6 01:01:24 UTC 2023 I: Submitting .buildinfo files to external archives:
Fri Jan 6 01:01:24 UTC 2023 I: Submitting 8.0K b1/busco_5.0.0-1_amd64.buildinfo.asc
Fri Jan 6 01:01:25 UTC 2023 I: Submitting 8.0K b2/busco_5.0.0-1_amd64.buildinfo.asc
Fri Jan 6 01:01:25 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Jan 6 01:01:25 UTC 2023 I: Done submitting .buildinfo files.
Fri Jan 6 01:01:25 UTC 2023 I: Removing signed busco_5.0.0-1_amd64.buildinfo.asc files:
removed './b1/busco_5.0.0-1_amd64.buildinfo.asc'
removed './b2/busco_5.0.0-1_amd64.buildinfo.asc'