Sat Dec 25 22:33:14 UTC 2021 I: starting to build berkeley-express/bullseye/amd64 on jenkins on '2021-12-25 22:33' Sat Dec 25 22:33:14 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_2/11782/console.log Sat Dec 25 22:33:14 UTC 2021 I: Downloading source for bullseye/berkeley-express=1.5.3+dfsg-1 --2021-12-25 22:33:14-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/berkeley-express/berkeley-express_1.5.3%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2475 (2.4K) Saving to: ‘berkeley-express_1.5.3+dfsg-1.dsc’ 0K .. 100% 270M=0s 2021-12-25 22:33:14 (270 MB/s) - ‘berkeley-express_1.5.3+dfsg-1.dsc’ saved [2475/2475] Sat Dec 25 22:33:14 UTC 2021 I: berkeley-express_1.5.3+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: berkeley-express Binary: berkeley-express, berkeley-express-doc Architecture: any all Version: 1.5.3+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: http://bio.math.berkeley.edu/eXpress/index.html Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/berkeley-express Vcs-Git: https://salsa.debian.org/med-team/berkeley-express.git Testsuite: autopkgtest Testsuite-Triggers: bowtie, gzip, samtools Build-Depends: debhelper-compat (= 12), libboost-thread-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-date-time-dev, libbamtools-dev, libboost-tools-dev, libgoogle-perftools-dev [amd64 arm64 armel armhf i386 powerpc ppc64el], cmake, libprotobuf-dev, protobuf-compiler Package-List: berkeley-express deb science optional arch=any berkeley-express-doc deb doc optional arch=all Checksums-Sha1: a24eee0a32da390f2f75be7526bf6a9a971bd3a3 365872 berkeley-express_1.5.3+dfsg.orig.tar.xz 2b2a559e26f16507bb59ca6e85f334a768d98bd1 10336 berkeley-express_1.5.3+dfsg-1.debian.tar.xz Checksums-Sha256: f26e2f6e4e04671a64619f014ab2195f42d53fbac8b8b84f46082c5cdc6d845b 365872 berkeley-express_1.5.3+dfsg.orig.tar.xz aaa50dca79e3364536e271d1100d0da4ca430c77cbf974d49a85456ba190ecf4 10336 berkeley-express_1.5.3+dfsg-1.debian.tar.xz Files: cdb0c73b54ec20a662c14e6bfee0e384 365872 berkeley-express_1.5.3+dfsg.orig.tar.xz 7bbc1b8cf8bb8284497d69b2522bee13 10336 berkeley-express_1.5.3+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl3Rcy8ACgkQPCZ2P2xn 5uLiNQ//exdwxy7TRVrTyRp+eHN4zyTm3kOy4/xIqj7wWxQQ7e/x0SDTKXBZavdw yXksbCAaPuBWw17vnzm8bOD+WBDg4ed4IXKQGJh3GcOX98hTVwGqt7bxudwVgLJK WWW52uNHEUimgecqIVQ7P1b8XBgehuh6SGdrnMHkLf+gHMEJieJ01hiEt27+5OTF cDqTtnIFy2HS8O39jWepADAOTdsu4Xo3fDDvyOeyEOYcBg177XREZ9RDHXidTYhO SC/4jUro1I46BWp9WfU7jr09R58EFMxEcX7KpBpKbuHw/jdjFdI6ICYCylUojVjH mUu51yEbWlfm8itJXSHvqr4j3S2EFFytP/8ZeTSrB7McKXE3mWv9FDkF3E/CGBF4 rldqT/PZapWg6HH4XmZFDynTjUajhrfBb6f7QPM+U9g7HKUe+Aj90RSjgbM1Gdrz CVlgDG8lZN6tHlNtiNr/vINf9NaiZ49PKHk46QlbZYFnOOFuMeBPHzqN6vSF7OZd cDrhD/V6rCs98UDd3I26qcwjpcCBTnwZCfK27p9rksSFtyPhYm/dDtbROPE7aM9T osEpf4fGkQhkLnaoPv22zydZn9jJSb0ruDZUYc3Z1RE1hDYJgQyIGwSLBOHniu2A xPxBJouA8qKIYRciZNNtYnxJs0ZfJSq239x8E+suosbio8py/3g= =PSlR -----END PGP SIGNATURE----- Sat Dec 25 22:33:14 UTC 2021 I: Checking whether the package is not for us Sat Dec 25 22:33:14 UTC 2021 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sat Dec 25 22:33:14 UTC 2021 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sat Dec 25 22:34:26 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 27 16:56:25 -12 2023 I: pbuilder-time-stamp: 1674881785 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [berkeley-express_1.5.3+dfsg-1.dsc] I: copying [./berkeley-express_1.5.3+dfsg.orig.tar.xz] I: copying [./berkeley-express_1.5.3+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.XkMEbcI1/trustedkeys.kbx': General error gpgv: Signature made Sun Nov 17 04:19:59 2019 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./berkeley-express_1.5.3+dfsg-1.dsc dpkg-source: info: extracting berkeley-express in berkeley-express-1.5.3+dfsg dpkg-source: info: unpacking berkeley-express_1.5.3+dfsg.orig.tar.xz dpkg-source: info: unpacking berkeley-express_1.5.3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling-fixes dpkg-source: info: applying fix-bamtools-path dpkg-source: info: applying drop-zlib dpkg-source: info: applying correct-debug-flags.patch dpkg-source: info: applying privacy-breach.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/209580/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2939c9de43d54d5fbfd19556d40d3510' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='209580' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.nOQb0z13XR/pbuilderrc_ZXmr --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.nOQb0z13XR/b1 --logfile b1/build.log berkeley-express_1.5.3+dfsg-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 23 03:47 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/209580/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libboost-thread-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-date-time-dev, libbamtools-dev, libboost-tools-dev, libgoogle-perftools-dev, cmake, libprotobuf-dev, protobuf-compiler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libbamtools-dev; however: Package libbamtools-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-tools-dev; however: Package libboost-tools-dev is not installed. pbuilder-satisfydepends-dummy depends on libgoogle-perftools-dev; however: Package libgoogle-perftools-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libprotobuf-dev; however: Package libprotobuf-dev is not installed. pbuilder-satisfydepends-dummy depends on protobuf-compiler; however: Package protobuf-compiler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbamtools-dev{a} libbamtools2.5.1{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-tools-dev{a} libboost1.74-dev{a} libboost1.74-tools-dev{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgoogle-perftools-dev{a} libgoogle-perftools4{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libprotobuf-dev{a} libprotobuf-lite23{a} libprotobuf23{a} libprotoc23{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtcmalloc-minimal4{a} libtool{a} libuchardet0{a} libunwind-dev{a} libunwind8{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} protobuf-compiler{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 49.3 MB of archives. After unpacking 327 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-9 [158 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libbamtools-dev amd64 2.5.1+dfsg-9 [208 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libboost-atomic1.74.0 amd64 1.74.0-9 [244 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libboost-atomic1.74-dev amd64 1.74.0-9 [245 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono1.74.0 amd64 1.74.0-9 [252 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono1.74-dev amd64 1.74.0-9 [260 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time1.74.0 amd64 1.74.0-9 [241 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74.0 amd64 1.74.0-9 [340 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74-dev amd64 1.74.0-9 [383 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time1.74-dev amd64 1.74.0-9 [250 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time-dev amd64 1.74.0.3 [4332 B] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-9 [283 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74.0 amd64 1.74.0-9 [241 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74-dev amd64 1.74.0-9 [243 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74-dev amd64 1.74.0-9 [304 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74-dev amd64 1.74.0-9 [386 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options-dev amd64 1.74.0.3 [4340 B] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libboost-system-dev amd64 1.74.0.3 [4468 B] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libboost-thread1.74.0 amd64 1.74.0-9 [279 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libboost-thread1.74-dev amd64 1.74.0-9 [290 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libboost-thread-dev amd64 1.74.0.3 [4356 B] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-tools-dev amd64 1.74.0-9 [1465 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libboost-tools-dev amd64 1.74.0.3 [4508 B] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libtcmalloc-minimal4 amd64 2.8.1-1 [94.1 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libunwind8 amd64 1.3.2-2 [54.5 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libgoogle-perftools4 amd64 2.8.1-1 [200 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 liblzma-dev amd64 5.2.5-2 [229 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 libunwind-dev amd64 1.3.2-2 [414 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libgoogle-perftools-dev amd64 2.8.1-1 [455 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libprotobuf23 amd64 3.12.4-1 [892 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libprotobuf-lite23 amd64 3.12.4-1 [241 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libprotobuf-dev amd64 3.12.4-1 [1232 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 libprotoc23 amd64 3.12.4-1 [803 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 protobuf-compiler amd64 3.12.4-1 [75.1 kB] Fetched 49.3 MB in 1s (83.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../05-libncurses6_6.2+20201114-2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../06-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../10-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../13-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../16-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../17-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../18-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../19-cmake-data_3.18.4-2+deb11u1_all.deb ... Unpacking cmake-data (3.18.4-2+deb11u1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../20-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../21-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../22-libarchive13_3.4.3-2+b1_amd64.deb ... Unpacking libarchive13:amd64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../23-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../24-libsasl2-modules-db_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../25-libsasl2-2_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../26-libldap-2.4-2_2.4.57+dfsg-3_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../27-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../28-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../29-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../30-libssh2-1_1.9.0-2_amd64.deb ... Unpacking libssh2-1:amd64 (1.9.0-2) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../31-libcurl4_7.74.0-1.3+deb11u1_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../32-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:amd64. Preparing to unpack .../33-libjsoncpp24_1.9.4-4_amd64.deb ... Unpacking libjsoncpp24:amd64 (1.9.4-4) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../34-librhash0_1.4.1-2_amd64.deb ... Unpacking librhash0:amd64 (1.4.1-2) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../35-libuv1_1.40.0-2_amd64.deb ... Unpacking libuv1:amd64 (1.40.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../36-cmake_3.18.4-2+deb11u1_amd64.deb ... Unpacking cmake (3.18.4-2+deb11u1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../37-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../38-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../39-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../40-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../41-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../42-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../43-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../44-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../45-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../46-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../47-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../48-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../49-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libbamtools2.5.1:amd64. Preparing to unpack .../50-libbamtools2.5.1_2.5.1+dfsg-9_amd64.deb ... Unpacking libbamtools2.5.1:amd64 (2.5.1+dfsg-9) ... Selecting previously unselected package libbamtools-dev:amd64. Preparing to unpack .../51-libbamtools-dev_2.5.1+dfsg-9_amd64.deb ... Unpacking libbamtools-dev:amd64 (2.5.1+dfsg-9) ... Selecting previously unselected package libboost1.74-dev:amd64. Preparing to unpack .../52-libboost1.74-dev_1.74.0-9_amd64.deb ... Unpacking libboost1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-atomic1.74.0:amd64. Preparing to unpack .../53-libboost-atomic1.74.0_1.74.0-9_amd64.deb ... Unpacking libboost-atomic1.74.0:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-atomic1.74-dev:amd64. Preparing to unpack .../54-libboost-atomic1.74-dev_1.74.0-9_amd64.deb ... Unpacking libboost-atomic1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-chrono1.74.0:amd64. Preparing to unpack .../55-libboost-chrono1.74.0_1.74.0-9_amd64.deb ... Unpacking libboost-chrono1.74.0:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-chrono1.74-dev:amd64. Preparing to unpack .../56-libboost-chrono1.74-dev_1.74.0-9_amd64.deb ... Unpacking libboost-chrono1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-date-time1.74.0:amd64. Preparing to unpack .../57-libboost-date-time1.74.0_1.74.0-9_amd64.deb ... Unpacking libboost-date-time1.74.0:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-serialization1.74.0:amd64. Preparing to unpack .../58-libboost-serialization1.74.0_1.74.0-9_amd64.deb ... Unpacking libboost-serialization1.74.0:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-serialization1.74-dev:amd64. Preparing to unpack .../59-libboost-serialization1.74-dev_1.74.0-9_amd64.deb ... Unpacking libboost-serialization1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-date-time1.74-dev:amd64. Preparing to unpack .../60-libboost-date-time1.74-dev_1.74.0-9_amd64.deb ... Unpacking libboost-date-time1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-date-time-dev:amd64. Preparing to unpack .../61-libboost-date-time-dev_1.74.0.3_amd64.deb ... Unpacking libboost-date-time-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libboost-filesystem1.74.0:amd64. Preparing to unpack .../62-libboost-filesystem1.74.0_1.74.0-9_amd64.deb ... Unpacking libboost-filesystem1.74.0:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-system1.74.0:amd64. Preparing to unpack .../63-libboost-system1.74.0_1.74.0-9_amd64.deb ... Unpacking libboost-system1.74.0:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-system1.74-dev:amd64. Preparing to unpack .../64-libboost-system1.74-dev_1.74.0-9_amd64.deb ... Unpacking libboost-system1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-filesystem1.74-dev:amd64. Preparing to unpack .../65-libboost-filesystem1.74-dev_1.74.0-9_amd64.deb ... Unpacking libboost-filesystem1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-filesystem-dev:amd64. Preparing to unpack .../66-libboost-filesystem-dev_1.74.0.3_amd64.deb ... Unpacking libboost-filesystem-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libboost-program-options1.74.0:amd64. Preparing to unpack .../67-libboost-program-options1.74.0_1.74.0-9_amd64.deb ... Unpacking libboost-program-options1.74.0:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-program-options1.74-dev:amd64. Preparing to unpack .../68-libboost-program-options1.74-dev_1.74.0-9_amd64.deb ... Unpacking libboost-program-options1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-program-options-dev:amd64. Preparing to unpack .../69-libboost-program-options-dev_1.74.0.3_amd64.deb ... Unpacking libboost-program-options-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libboost-system-dev:amd64. Preparing to unpack .../70-libboost-system-dev_1.74.0.3_amd64.deb ... Unpacking libboost-system-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libboost-thread1.74.0:amd64. Preparing to unpack .../71-libboost-thread1.74.0_1.74.0-9_amd64.deb ... Unpacking libboost-thread1.74.0:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-thread1.74-dev:amd64. Preparing to unpack .../72-libboost-thread1.74-dev_1.74.0-9_amd64.deb ... Unpacking libboost-thread1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-thread-dev:amd64. Preparing to unpack .../73-libboost-thread-dev_1.74.0.3_amd64.deb ... Unpacking libboost-thread-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libboost1.74-tools-dev. Preparing to unpack .../74-libboost1.74-tools-dev_1.74.0-9_amd64.deb ... Unpacking libboost1.74-tools-dev (1.74.0-9) ... Selecting previously unselected package libboost-tools-dev. Preparing to unpack .../75-libboost-tools-dev_1.74.0.3_amd64.deb ... Unpacking libboost-tools-dev (1.74.0.3) ... Selecting previously unselected package libtcmalloc-minimal4:amd64. Preparing to unpack .../76-libtcmalloc-minimal4_2.8.1-1_amd64.deb ... Unpacking libtcmalloc-minimal4:amd64 (2.8.1-1) ... Selecting previously unselected package libunwind8:amd64. Preparing to unpack .../77-libunwind8_1.3.2-2_amd64.deb ... Unpacking libunwind8:amd64 (1.3.2-2) ... Selecting previously unselected package libgoogle-perftools4:amd64. Preparing to unpack .../78-libgoogle-perftools4_2.8.1-1_amd64.deb ... Unpacking libgoogle-perftools4:amd64 (2.8.1-1) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../79-liblzma-dev_5.2.5-2_amd64.deb ... Unpacking liblzma-dev:amd64 (5.2.5-2) ... Selecting previously unselected package libunwind-dev:amd64. Preparing to unpack .../80-libunwind-dev_1.3.2-2_amd64.deb ... Unpacking libunwind-dev:amd64 (1.3.2-2) ... Selecting previously unselected package libgoogle-perftools-dev:amd64. Preparing to unpack .../81-libgoogle-perftools-dev_2.8.1-1_amd64.deb ... Unpacking libgoogle-perftools-dev:amd64 (2.8.1-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../82-zlib1g-dev_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Selecting previously unselected package libprotobuf23:amd64. Preparing to unpack .../83-libprotobuf23_3.12.4-1_amd64.deb ... Unpacking libprotobuf23:amd64 (3.12.4-1) ... Selecting previously unselected package libprotobuf-lite23:amd64. Preparing to unpack .../84-libprotobuf-lite23_3.12.4-1_amd64.deb ... Unpacking libprotobuf-lite23:amd64 (3.12.4-1) ... Selecting previously unselected package libprotobuf-dev:amd64. Preparing to unpack .../85-libprotobuf-dev_3.12.4-1_amd64.deb ... Unpacking libprotobuf-dev:amd64 (3.12.4-1) ... Selecting previously unselected package libprotoc23:amd64. Preparing to unpack .../86-libprotoc23_3.12.4-1_amd64.deb ... Unpacking libprotoc23:amd64 (3.12.4-1) ... Selecting previously unselected package protobuf-compiler. Preparing to unpack .../87-protobuf-compiler_3.12.4-1_amd64.deb ... Unpacking protobuf-compiler (3.12.4-1) ... Setting up libboost-chrono1.74.0:amd64 (1.74.0-9) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libboost-system1.74.0:amd64 (1.74.0-9) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libboost1.74-dev:amd64 (1.74.0-9) ... Setting up libboost-atomic1.74.0:amd64 (1.74.0-9) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-program-options1.74.0:amd64 (1.74.0-9) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libboost-chrono1.74-dev:amd64 (1.74.0-9) ... Setting up libtcmalloc-minimal4:amd64 (2.8.1-1) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up libboost-filesystem1.74.0:amd64 (1.74.0-9) ... Setting up libprotobuf23:amd64 (3.12.4-1) ... Setting up file (1:5.39-3) ... Setting up libunwind8:amd64 (1.3.2-2) ... Setting up libboost-program-options1.74-dev:amd64 (1.74.0-9) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up libprotobuf-lite23:amd64 (3.12.4-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:amd64 (1.40.0-2) ... Setting up libboost-program-options-dev:amd64 (1.74.0.3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libprotoc23:amd64 (3.12.4-1) ... Setting up libboost-system1.74-dev:amd64 (1.74.0-9) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libbamtools2.5.1:amd64 (2.5.1+dfsg-9) ... Setting up autopoint (0.21-4) ... Setting up libboost1.74-tools-dev (1.74.0-9) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up libboost-atomic1.74-dev:amd64 (1.74.0-9) ... Setting up liblzma-dev:amd64 (5.2.5-2) ... Setting up libboost-serialization1.74.0:amd64 (1.74.0-9) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:amd64 (1.4.1-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libboost-filesystem1.74-dev:amd64 (1.74.0-9) ... Setting up libboost-date-time1.74.0:amd64 (1.74.0-9) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libboost-filesystem-dev:amd64 (1.74.0.3) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libgoogle-perftools4:amd64 (2.8.1-1) ... Setting up libboost-thread1.74.0:amd64 (1.74.0-9) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libunwind-dev:amd64 (1.3.2-2) ... Setting up protobuf-compiler (3.12.4-1) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2+b1) ... Setting up libgoogle-perftools-dev:amd64 (2.8.1-1) ... Setting up libboost-system-dev:amd64 (1.74.0.3) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libboost-tools-dev (1.74.0.3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libprotobuf-dev:amd64 (3.12.4-1) ... Setting up libbamtools-dev:amd64 (2.5.1+dfsg-9) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:amd64 (1.74.0-9) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libboost-date-time1.74-dev:amd64 (1.74.0-9) ... Setting up libboost-date-time-dev:amd64 (1.74.0.3) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up libboost-thread1.74-dev:amd64 (1.74.0-9) ... Setting up libboost-thread-dev:amd64 (1.74.0.3) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/berkeley-express-1.5.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../berkeley-express_1.5.3+dfsg-1_source.changes dpkg-buildpackage: info: source package berkeley-express dpkg-buildpackage: info: source version 1.5.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg' dh_clean src/config.h make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg' debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.39") found components: thread system filesystem program_options date_time -- Found GPERFTOOLS_TCMALLOC: /usr/lib/x86_64-linux-gnu/libtcmalloc.so -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so;-lpthread (found version "3.12.4") -- Do not try to find libbamtools.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/berkeley-express-1.5.3+dfsg -B/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [ 5%] Running cpp protocol buffer compiler on /build/berkeley-express-1.5.3+dfsg/src/targets.proto cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/protoc --cpp_out /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src -I /build/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-1.5.3+dfsg/src/targets.proto [ 11%] Running cpp protocol buffer compiler on /build/berkeley-express-1.5.3+dfsg/src/alignments.proto cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/protoc --cpp_out /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src -I /build/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-1.5.3+dfsg/src/alignments.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: targets.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: alignments.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/berkeley-express-1.5.3+dfsg /build/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= Dependee "/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake" is newer than depender "/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/express.dir/depend.internal". Dependee "/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/express.dir/depend.internal". Scanning dependencies of target express make[3]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build make[3]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [ 16%] Building CXX object src/CMakeFiles/express.dir/directiondetector.cpp.o [ 22%] Building CXX object src/CMakeFiles/express.dir/biascorrection.cpp.o [ 27%] Building CXX object src/CMakeFiles/express.dir/markovmodel.cpp.o [ 33%] Building CXX object src/CMakeFiles/express.dir/main.cpp.o [ 38%] Building CXX object src/CMakeFiles/express.dir/fragments.cpp.o [ 50%] Building CXX object src/CMakeFiles/express.dir/mismatchmodel.cpp.o [ 50%] Building CXX object src/CMakeFiles/express.dir/lengthdistribution.cpp.o [ 55%] Building CXX object src/CMakeFiles/express.dir/mapparser.cpp.o [ 61%] Building CXX object src/CMakeFiles/express.dir/bundles.cpp.o [ 66%] Building CXX object src/CMakeFiles/express.dir/robertsfilter.cpp.o cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/fragments.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/fragments.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/main.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/main.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/lengthdistribution.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/lengthdistribution.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/bundles.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/bundles.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/markovmodel.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/markovmodel.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/directiondetector.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/directiondetector.cpp [ 72%] Building CXX object src/CMakeFiles/express.dir/sequence.cpp.o [ 77%] Building CXX object src/CMakeFiles/express.dir/threadsafety.cpp.o : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 83%] Building CXX object src/CMakeFiles/express.dir/targets.cpp.o : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/biascorrection.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/biascorrection.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/mapparser.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/mapparser.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/mismatchmodel.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/mismatchmodel.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/robertsfilter.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/robertsfilter.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/sequence.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/sequence.cpp [ 88%] Building CXX object src/CMakeFiles/express.dir/alignments.pb.cc.o [ 94%] Building CXX object src/CMakeFiles/express.dir/targets.pb.cc.o cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/targets.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/targets.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/threadsafety.cpp.o -c /build/berkeley-express-1.5.3+dfsg/src/threadsafety.cpp cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/targets.pb.cc.o -c /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/targets.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/alignments.pb.cc.o -c /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/alignments.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [100%] Linking CXX executable express cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/express.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/express.dir/biascorrection.cpp.o CMakeFiles/express.dir/bundles.cpp.o CMakeFiles/express.dir/directiondetector.cpp.o CMakeFiles/express.dir/fragments.cpp.o CMakeFiles/express.dir/lengthdistribution.cpp.o CMakeFiles/express.dir/main.cpp.o CMakeFiles/express.dir/mapparser.cpp.o CMakeFiles/express.dir/markovmodel.cpp.o CMakeFiles/express.dir/mismatchmodel.cpp.o CMakeFiles/express.dir/robertsfilter.cpp.o CMakeFiles/express.dir/sequence.cpp.o CMakeFiles/express.dir/targets.cpp.o CMakeFiles/express.dir/threadsafety.cpp.o CMakeFiles/express.dir/alignments.pb.cc.o CMakeFiles/express.dir/targets.pb.cc.o -o express /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_date_time.so.1.74.0 -lbamtools -lprotobuf -lpthread -lrt /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.74.0 -lpthread make[3]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [100%] Built target express make[2]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/berkeley-express-1.5.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/berkeley-express-1.5.3+dfsg -B/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' cd /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/berkeley-express-1.5.3+dfsg /build/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build make[3]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/express.dir/build'. make[3]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [100%] Built target express make[2]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/berkeley-express-1.5.3+dfsg/debian/tmp/usr/bin/express make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg' dh_compress --exclude=express-doc.pdf make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg' dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'berkeley-express-dbgsym' in '../berkeley-express-dbgsym_1.5.3+dfsg-1_amd64.deb'. dpkg-deb: building package 'berkeley-express' in '../berkeley-express_1.5.3+dfsg-1_amd64.deb'. dpkg-deb: building package 'berkeley-express-doc' in '../berkeley-express-doc_1.5.3+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../berkeley-express_1.5.3+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/209580 and its subdirectories I: Current time: Fri Jan 27 16:57:34 -12 2023 I: pbuilder-time-stamp: 1674881855 Sat Dec 25 22:34:26 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sat Dec 25 22:34:26 UTC 2021 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sat Dec 25 22:45:18 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sat Dec 25 22:45:18 UTC 2021 I: berkeley-express_1.5.3+dfsg-1_amd64.changes: Format: 1.8 Date: Sun, 17 Nov 2019 17:17:25 +0100 Source: berkeley-express Binary: berkeley-express berkeley-express-dbgsym berkeley-express-doc Architecture: amd64 all Version: 1.5.3+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: berkeley-express - Streaming quantification for high-throughput sequencing berkeley-express-doc - Documentation for RNA-Seq tool eXpress Changes: berkeley-express (1.5.3+dfsg-1) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. . [ Michael R. Crusoe ] * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 * -doc: Include the sample data * remove the version check for privacy Checksums-Sha1: 949190a1527d6c5462b5fae97cd09d515d695ea9 4395180 berkeley-express-dbgsym_1.5.3+dfsg-1_amd64.deb 69707d8e9d29bc6b8e53b7ef96b5effb1f96f9fc 706664 berkeley-express-doc_1.5.3+dfsg-1_all.deb 1800984b0f34cfdb4c267aa8af24559024fd57c1 7637 berkeley-express_1.5.3+dfsg-1_amd64.buildinfo 2d64c93d14ad895d603f5dfe8f7c6f3c467d3ef6 227436 berkeley-express_1.5.3+dfsg-1_amd64.deb Checksums-Sha256: ff4c835485164a627064cc3842b1ee37c51fb918d88abf8b96e458fb49a1c3f1 4395180 berkeley-express-dbgsym_1.5.3+dfsg-1_amd64.deb ceb8b123fe4103bb28ddff5d2374687fee0c63986369f7a51a3c34eb7d23b876 706664 berkeley-express-doc_1.5.3+dfsg-1_all.deb 0dd635749902925a37b8641a9814cddd4b5091881ef48b28929e7e387116caad 7637 berkeley-express_1.5.3+dfsg-1_amd64.buildinfo 633108451c5d94e1268eedf9e6f901abc09ac7d07f5e21cff31bd0a4116f846c 227436 berkeley-express_1.5.3+dfsg-1_amd64.deb Files: 49480bb38c4906fc79f6f04a02f9f929 4395180 debug optional berkeley-express-dbgsym_1.5.3+dfsg-1_amd64.deb f0ce7412958c92d5baa210a577855b0d 706664 doc optional berkeley-express-doc_1.5.3+dfsg-1_all.deb 5f3e6c8458066779bc362b5f4abcd254 7637 science optional berkeley-express_1.5.3+dfsg-1_amd64.buildinfo f1297ee230429a849bd12dce996796fa 227436 science optional berkeley-express_1.5.3+dfsg-1_amd64.deb Sat Dec 25 22:45:19 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.nOQb0z13XR/berkeley-express_1.5.3+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.nOQb0z13XR/berkeley-express_1.5.3+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.nOQb0z13XR/berkeley-express_1.5.3+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.nOQb0z13XR/b1/berkeley-express_1.5.3+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.nOQb0z13XR/b2/berkeley-express_1.5.3+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.343s) 0.343s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.081s) 0.080s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Dec 25 22:45:21 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Sat Dec 25 22:45:21 UTC 2021 I: berkeley-express from bullseye built successfully and reproducibly on amd64. Sat Dec 25 22:45:23 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Dec 25 22:45:23 UTC 2021 I: Submitting 12K b1/berkeley-express_1.5.3+dfsg-1_amd64.buildinfo.asc Sat Dec 25 22:45:24 UTC 2021 I: Submitting 12K b2/berkeley-express_1.5.3+dfsg-1_amd64.buildinfo.asc Sat Dec 25 22:45:25 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Dec 25 22:45:25 UTC 2021 I: Done submitting .buildinfo files. Sat Dec 25 22:45:25 UTC 2021 I: Removing signed berkeley-express_1.5.3+dfsg-1_amd64.buildinfo.asc files: removed './b1/berkeley-express_1.5.3+dfsg-1_amd64.buildinfo.asc' removed './b2/berkeley-express_1.5.3+dfsg-1_amd64.buildinfo.asc'