Sun May 7 21:36:59 UTC 2023 I: starting to build vcfanno/bookworm/i386 on jenkins on '2023-05-07 21:36' Sun May 7 21:36:59 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/8776/console.log Sun May 7 21:36:59 UTC 2023 I: Downloading source for bookworm/vcfanno=0.3.5+ds-1 --2023-05-07 21:36:59-- http://cdn-fastly.deb.debian.org/debian/pool/main/v/vcfanno/vcfanno_0.3.5%2bds-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1820 (1.8K) [text/prs.lines.tag] Saving to: ‘vcfanno_0.3.5+ds-1.dsc’ 0K . 100% 47.3M=0s 2023-05-07 21:36:59 (47.3 MB/s) - ‘vcfanno_0.3.5+ds-1.dsc’ saved [1820/1820] Sun May 7 21:37:00 UTC 2023 I: vcfanno_0.3.5+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: vcfanno Binary: vcfanno, vcfanno-examples Architecture: any all Version: 0.3.5+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Nilesh Patra Homepage: https://github.com/brentp/vcfanno Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/vcfanno Vcs-Git: https://salsa.debian.org/med-team/vcfanno.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-hts-dev, golang-gopkg-check.v1-dev, golang-github-burntsushi-toml-dev, golang-github-brentp-irelate-dev, golang-github-brentp-vcfgo-dev, golang-github-brentp-bix-dev, golang-github-shenwei356-xopen-dev, golang-github-pkg-errors-dev, golang-github-brentp-goluaez-dev, samtools, tabix Package-List: vcfanno deb science optional arch=any vcfanno-examples deb science optional arch=all Checksums-Sha1: a8cebae68287adba2672af57d42c68bb12aac58b 501660 vcfanno_0.3.5+ds.orig.tar.xz a601c6e6f271f95aa3d34368778ed393ae91f420 2268928 vcfanno_0.3.5+ds-1.debian.tar.xz Checksums-Sha256: eedbe0f9a04a9422d1b4e34a2fd625a1d07d009058999883fa4df1b725f2c8ff 501660 vcfanno_0.3.5+ds.orig.tar.xz 902ea052bc887370bf16d3c1c08ff5efb0526cf5d4c6b0309a7648b4920fab6b 2268928 vcfanno_0.3.5+ds-1.debian.tar.xz Files: 5f52dc1c1e280f49a77c55ceb4672ca9 501660 vcfanno_0.3.5+ds.orig.tar.xz 5a2bf8eddf63bde1f0f77acf426a5dcf 2268928 vcfanno_0.3.5+ds-1.debian.tar.xz Go-Import-Path: github.com/brentp/vcfanno -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCY7Ah1QAKCRAqJ5BL1yQ+ 2qrWAQDFZTNs+txub0TcDEqS+9LfSQD7Nn4wl3ESXm2X7XQLcgEAl5liVdsEHDD3 LPuLpFuzBWAfxKWmvEOM2Ge/nEaKjws= =PlkC -----END PGP SIGNATURE----- Sun May 7 21:37:00 UTC 2023 I: Checking whether the package is not for us Sun May 7 21:37:00 UTC 2023 I: Starting 1st build on remote node ionos6-i386.debian.net. Sun May 7 21:37:00 UTC 2023 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Sun May 7 21:39:53 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 8 16:00:09 -12 2024 I: pbuilder-time-stamp: 1717905609 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [vcfanno_0.3.5+ds-1.dsc] I: copying [./vcfanno_0.3.5+ds.orig.tar.xz] I: copying [./vcfanno_0.3.5+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 30 23:49:41 2022 -12 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./vcfanno_0.3.5+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting vcfanno in vcfanno-0.3.5+ds dpkg-source: info: unpacking vcfanno_0.3.5+ds.orig.tar.xz dpkg-source: info: unpacking vcfanno_0.3.5+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-archive-xopen.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3800/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e572eefea5834b30a6726529b43d643b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3800' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1eZTK9eN/pbuilderrc_SM0x --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1eZTK9eN/b1 --logfile b1/build.log vcfanno_0.3.5+ds-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3800/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-hts-dev, golang-gopkg-check.v1-dev, golang-github-burntsushi-toml-dev, golang-github-brentp-irelate-dev, golang-github-brentp-vcfgo-dev, golang-github-brentp-bix-dev, golang-github-shenwei356-xopen-dev, golang-github-pkg-errors-dev, golang-github-brentp-goluaez-dev, samtools, tabix dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-golang; however: Package dh-golang is not installed. pbuilder-satisfydepends-dummy depends on golang-any; however: Package golang-any is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however: Package golang-github-biogo-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-gopkg-check.v1-dev; however: Package golang-gopkg-check.v1-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-burntsushi-toml-dev; however: Package golang-github-burntsushi-toml-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-brentp-irelate-dev; however: Package golang-github-brentp-irelate-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-brentp-vcfgo-dev; however: Package golang-github-brentp-vcfgo-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-brentp-bix-dev; however: Package golang-github-brentp-bix-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-xopen-dev; however: Package golang-github-shenwei356-xopen-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-pkg-errors-dev; however: Package golang-github-pkg-errors-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-brentp-goluaez-dev; however: Package golang-github-brentp-goluaez-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.19-go{a} golang-1.19-src{a} golang-any{a} golang-github-biogo-hts-dev{a} golang-github-brentp-bix-dev{a} golang-github-brentp-goluaez-dev{a} golang-github-brentp-irelate-dev{a} golang-github-brentp-vcfgo-dev{a} golang-github-burntsushi-toml-dev{a} golang-github-cespare-xxhash-dev{a} golang-github-creack-pty-dev{a} golang-github-klauspost-compress-dev{a} golang-github-klauspost-pgzip-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-pkg-diff-dev{a} golang-github-pkg-errors-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-shenwei356-xopen-dev{a} golang-github-ulikunitz-xz-dev{a} golang-github-yuin-gluare-dev{a} golang-github-yuin-gopher-lua-dev{a} golang-go{a} golang-golang-x-net-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-text-dev{a} golang-gopkg-check.v1-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkg-config pkgconf publicsuffix wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 143 MB of archives. After unpacking 639 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 dh-golang all 1.59 [27.8 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 golang-1.19-src all 1.19.8-2 [18.3 MB] Get: 33 http://deb.debian.org/debian bookworm/main i386 golang-1.19-go i386 1.19.8-2 [61.2 MB] Get: 34 http://deb.debian.org/debian bookworm/main i386 golang-src all 2:1.19~1 [5756 B] Get: 35 http://deb.debian.org/debian bookworm/main i386 golang-go i386 2:1.19~1 [45.0 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 golang-any i386 2:1.19~1 [5872 B] Get: 37 http://deb.debian.org/debian bookworm/main i386 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 golang-github-biogo-hts-dev all 1.4.4+dfsg1-1 [319 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 golang-github-pkg-errors-dev all 0.9.1-2 [13.2 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 golang-github-creack-pty-dev all 1.1.18-1 [9796 B] Get: 41 http://deb.debian.org/debian bookworm/main i386 golang-github-kr-text-dev all 0.2.0-2 [10.2 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 golang-github-pkg-diff-dev all 0.0~git20210226.20ebb0f-1 [93.6 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 golang-github-rogpeppe-go-internal-dev all 1.9.0-1 [117 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 golang-github-kr-pretty-dev all 0.3.0-1 [14.9 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 golang-github-brentp-bix-dev all 0.0~git20190718.00aa7a7+ds-2 [7608 B] Get: 47 http://deb.debian.org/debian bookworm/main i386 golang-golang-x-sys-dev all 0.3.0-1 [393 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 golang-golang-x-text-dev all 0.7.0-1 [3863 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 golang-golang-x-net-dev all 1:0.7.0+dfsg-1 [731 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 golang-github-yuin-gopher-lua-dev all 0.0~git20170915.0.eb1c729-5 [115 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 golang-github-yuin-gluare-dev all 0.0~git20170607.d7c94f1-2 [5204 B] Get: 52 http://deb.debian.org/debian bookworm/main i386 golang-github-brentp-goluaez-dev all 0.0~git20160116.dd35d08-2 [5068 B] Get: 53 http://deb.debian.org/debian bookworm/main i386 golang-github-brentp-irelate-dev all 0.0.1+ds-1 [4136 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 golang-github-brentp-vcfgo-dev all 0.0~git20190824.654ed2e-2 [40.7 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 golang-github-burntsushi-toml-dev all 1.2.0-2 [90.8 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 golang-github-cespare-xxhash-dev all 2.1.1-2 [8888 B] Get: 57 http://deb.debian.org/debian bookworm/main i386 golang-github-klauspost-compress-dev all 1.15.12+ds1-3 [30.8 MB] Get: 58 http://deb.debian.org/debian bookworm/main i386 golang-github-klauspost-pgzip-dev all 1.2.5-2 [115 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 golang-github-shenwei356-xopen-dev all 0.0~git20181203.f4f16dd-2 [6036 B] Get: 60 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libncurses6 i386 6.4-2 [111 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 samtools i386 1.16.1-1 [637 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 tabix i386 1.16+ds-3 [501 kB] Fetched 143 MB in 3s (52.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package dh-golang. Preparing to unpack .../30-dh-golang_1.59_all.deb ... Unpacking dh-golang (1.59) ... Selecting previously unselected package golang-1.19-src. Preparing to unpack .../31-golang-1.19-src_1.19.8-2_all.deb ... Unpacking golang-1.19-src (1.19.8-2) ... Selecting previously unselected package golang-1.19-go. Preparing to unpack .../32-golang-1.19-go_1.19.8-2_i386.deb ... Unpacking golang-1.19-go (1.19.8-2) ... Selecting previously unselected package golang-src. Preparing to unpack .../33-golang-src_2%3a1.19~1_all.deb ... Unpacking golang-src (2:1.19~1) ... Selecting previously unselected package golang-go:i386. Preparing to unpack .../34-golang-go_2%3a1.19~1_i386.deb ... Unpacking golang-go:i386 (2:1.19~1) ... Selecting previously unselected package golang-any:i386. Preparing to unpack .../35-golang-any_2%3a1.19~1_i386.deb ... Unpacking golang-any:i386 (2:1.19~1) ... Selecting previously unselected package golang-github-ulikunitz-xz-dev. Preparing to unpack .../36-golang-github-ulikunitz-xz-dev_0.5.6-2_all.deb ... Unpacking golang-github-ulikunitz-xz-dev (0.5.6-2) ... Selecting previously unselected package golang-github-biogo-hts-dev. Preparing to unpack .../37-golang-github-biogo-hts-dev_1.4.4+dfsg1-1_all.deb ... Unpacking golang-github-biogo-hts-dev (1.4.4+dfsg1-1) ... Selecting previously unselected package golang-github-pkg-errors-dev. Preparing to unpack .../38-golang-github-pkg-errors-dev_0.9.1-2_all.deb ... Unpacking golang-github-pkg-errors-dev (0.9.1-2) ... Selecting previously unselected package golang-github-creack-pty-dev. Preparing to unpack .../39-golang-github-creack-pty-dev_1.1.18-1_all.deb ... Unpacking golang-github-creack-pty-dev (1.1.18-1) ... Selecting previously unselected package golang-github-kr-text-dev. Preparing to unpack .../40-golang-github-kr-text-dev_0.2.0-2_all.deb ... Unpacking golang-github-kr-text-dev (0.2.0-2) ... Selecting previously unselected package golang-github-pkg-diff-dev. Preparing to unpack .../41-golang-github-pkg-diff-dev_0.0~git20210226.20ebb0f-1_all.deb ... Unpacking golang-github-pkg-diff-dev (0.0~git20210226.20ebb0f-1) ... Selecting previously unselected package golang-github-rogpeppe-go-internal-dev. Preparing to unpack .../42-golang-github-rogpeppe-go-internal-dev_1.9.0-1_all.deb ... Unpacking golang-github-rogpeppe-go-internal-dev (1.9.0-1) ... Selecting previously unselected package golang-github-kr-pretty-dev. Preparing to unpack .../43-golang-github-kr-pretty-dev_0.3.0-1_all.deb ... Unpacking golang-github-kr-pretty-dev (0.3.0-1) ... Selecting previously unselected package golang-gopkg-check.v1-dev. Preparing to unpack .../44-golang-gopkg-check.v1-dev_0.0+git20200902.038fdea-1_all.deb ... Unpacking golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Selecting previously unselected package golang-github-brentp-bix-dev. Preparing to unpack .../45-golang-github-brentp-bix-dev_0.0~git20190718.00aa7a7+ds-2_all.deb ... Unpacking golang-github-brentp-bix-dev (0.0~git20190718.00aa7a7+ds-2) ... Selecting previously unselected package golang-golang-x-sys-dev. Preparing to unpack .../46-golang-golang-x-sys-dev_0.3.0-1_all.deb ... Unpacking golang-golang-x-sys-dev (0.3.0-1) ... Selecting previously unselected package golang-golang-x-text-dev. Preparing to unpack .../47-golang-golang-x-text-dev_0.7.0-1_all.deb ... Unpacking golang-golang-x-text-dev (0.7.0-1) ... Selecting previously unselected package golang-golang-x-net-dev. Preparing to unpack .../48-golang-golang-x-net-dev_1%3a0.7.0+dfsg-1_all.deb ... Unpacking golang-golang-x-net-dev (1:0.7.0+dfsg-1) ... Selecting previously unselected package golang-github-yuin-gopher-lua-dev. Preparing to unpack .../49-golang-github-yuin-gopher-lua-dev_0.0~git20170915.0.eb1c729-5_all.deb ... Unpacking golang-github-yuin-gopher-lua-dev (0.0~git20170915.0.eb1c729-5) ... Selecting previously unselected package golang-github-yuin-gluare-dev. Preparing to unpack .../50-golang-github-yuin-gluare-dev_0.0~git20170607.d7c94f1-2_all.deb ... Unpacking golang-github-yuin-gluare-dev (0.0~git20170607.d7c94f1-2) ... Selecting previously unselected package golang-github-brentp-goluaez-dev. Preparing to unpack .../51-golang-github-brentp-goluaez-dev_0.0~git20160116.dd35d08-2_all.deb ... Unpacking golang-github-brentp-goluaez-dev (0.0~git20160116.dd35d08-2) ... Selecting previously unselected package golang-github-brentp-irelate-dev. Preparing to unpack .../52-golang-github-brentp-irelate-dev_0.0.1+ds-1_all.deb ... Unpacking golang-github-brentp-irelate-dev (0.0.1+ds-1) ... Selecting previously unselected package golang-github-brentp-vcfgo-dev. Preparing to unpack .../53-golang-github-brentp-vcfgo-dev_0.0~git20190824.654ed2e-2_all.deb ... Unpacking golang-github-brentp-vcfgo-dev (0.0~git20190824.654ed2e-2) ... Selecting previously unselected package golang-github-burntsushi-toml-dev. Preparing to unpack .../54-golang-github-burntsushi-toml-dev_1.2.0-2_all.deb ... Unpacking golang-github-burntsushi-toml-dev (1.2.0-2) ... Selecting previously unselected package golang-github-cespare-xxhash-dev. Preparing to unpack .../55-golang-github-cespare-xxhash-dev_2.1.1-2_all.deb ... Unpacking golang-github-cespare-xxhash-dev (2.1.1-2) ... Selecting previously unselected package golang-github-klauspost-compress-dev. Preparing to unpack .../56-golang-github-klauspost-compress-dev_1.15.12+ds1-3_all.deb ... Unpacking golang-github-klauspost-compress-dev (1.15.12+ds1-3) ... Selecting previously unselected package golang-github-klauspost-pgzip-dev. Preparing to unpack .../57-golang-github-klauspost-pgzip-dev_1.2.5-2_all.deb ... Unpacking golang-github-klauspost-pgzip-dev (1.2.5-2) ... Selecting previously unselected package golang-github-shenwei356-xopen-dev. Preparing to unpack .../58-golang-github-shenwei356-xopen-dev_0.0~git20181203.f4f16dd-2_all.deb ... Unpacking golang-github-shenwei356-xopen-dev (0.0~git20181203.f4f16dd-2) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../59-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../60-libsasl2-modules-db_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../61-libsasl2-2_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../62-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../63-libnghttp2-14_1.52.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.52.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../64-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../65-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../66-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:i386. Preparing to unpack .../67-libcurl3-gnutls_7.88.1-9_i386.deb ... Unpacking libcurl3-gnutls:i386 (7.88.1-9) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../68-libdeflate0_1.14-1_i386.deb ... Unpacking libdeflate0:i386 (1.14-1) ... Selecting previously unselected package libhtscodecs2:i386. Preparing to unpack .../69-libhtscodecs2_1.3.0-4_i386.deb ... Unpacking libhtscodecs2:i386 (1.3.0-4) ... Selecting previously unselected package libhts3:i386. Preparing to unpack .../70-libhts3_1.16+ds-3_i386.deb ... Unpacking libhts3:i386 (1.16+ds-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../71-libncurses6_6.4-2_i386.deb ... Unpacking libncurses6:i386 (6.4-2) ... Selecting previously unselected package samtools. Preparing to unpack .../72-samtools_1.16.1-1_i386.deb ... Unpacking samtools (1.16.1-1) ... Selecting previously unselected package tabix. Preparing to unpack .../73-tabix_1.16+ds-3_i386.deb ... Unpacking tabix (1.16+ds-3) ... Setting up libhtscodecs2:i386 (1.3.0-4) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libicu72:i386 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up golang-github-creack-pty-dev (1.1.18-1) ... Setting up golang-github-pkg-diff-dev (0.0~git20210226.20ebb0f-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up golang-github-pkg-errors-dev (0.9.1-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up golang-github-burntsushi-toml-dev (1.2.0-2) ... Setting up golang-golang-x-sys-dev (0.3.0-1) ... Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up libdeflate0:i386 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up golang-1.19-src (1.19.8-2) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up golang-github-cespare-xxhash-dev (2.1.1-2) ... Setting up autotools-dev (20220109.1) ... Setting up golang-github-kr-text-dev (0.2.0-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:i386 (6.4-2) ... Setting up autopoint (0.21-12) ... Setting up golang-github-klauspost-compress-dev (1.15.12+ds1-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up golang-golang-x-text-dev (0.7.0-1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up golang-github-klauspost-pgzip-dev (1.2.5-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up golang-github-rogpeppe-go-internal-dev (1.9.0-1) ... Setting up golang-src (2:1.19~1) ... Setting up tabix (1.16+ds-3) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up golang-github-ulikunitz-xz-dev (0.5.6-2) ... Setting up golang-1.19-go (1.19.8-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up golang-github-kr-pretty-dev (0.3.0-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up golang-go:i386 (2:1.19~1) ... Setting up golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up golang-any:i386 (2:1.19~1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up golang-github-biogo-hts-dev (1.4.4+dfsg1-1) ... Setting up golang-golang-x-net-dev (1:0.7.0+dfsg-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up golang-github-brentp-bix-dev (0.0~git20190718.00aa7a7+ds-2) ... Setting up golang-github-brentp-vcfgo-dev (0.0~git20190824.654ed2e-2) ... Setting up golang-github-yuin-gopher-lua-dev (0.0~git20170915.0.eb1c729-5) ... Setting up golang-github-brentp-irelate-dev (0.0.1+ds-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up golang-github-shenwei356-xopen-dev (0.0~git20181203.f4f16dd-2) ... Setting up libcurl3-gnutls:i386 (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up golang-github-yuin-gluare-dev (0.0~git20170607.d7c94f1-2) ... Setting up libhts3:i386 (1.16+ds-3) ... Setting up golang-github-brentp-goluaez-dev (0.0~git20160116.dd35d08-2) ... Setting up debhelper (13.11.4) ... Setting up samtools (1.16.1-1) ... Setting up dh-golang (1.59) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vcfanno_0.3.5+ds-1_source.changes dpkg-buildpackage: info: source package vcfanno dpkg-buildpackage: info: source version 0.3.5+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=golang --with=golang dh_auto_clean -O--buildsystem=golang dh_autoreconf_clean -O--buildsystem=golang dh_clean -O--buildsystem=golang debian/rules binary dh binary --buildsystem=golang --with=golang dh_update_autotools_config -O--buildsystem=golang dh_autoreconf -O--buildsystem=golang dh_auto_configure -O--buildsystem=golang dh_auto_build -O--buildsystem=golang cd obj-i686-linux-gnu && go install -trimpath -v -p 16 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared container/list internal/goos internal/unsafeheader encoding unicode/utf16 internal/goexperiment unicode/utf8 internal/race internal/goarch unicode math/bits crypto/internal/subtle runtime/internal/math internal/itoa internal/nettrace internal/abi runtime/internal/atomic crypto/subtle runtime/internal/sys runtime/internal/syscall vendor/golang.org/x/crypto/internal/subtle internal/cpu crypto/internal/boring/sig vendor/golang.org/x/crypto/cryptobyte/asn1 sync/atomic math internal/bytealg runtime internal/reflectlite sync internal/testlog internal/singleflight math/rand runtime/cgo errors sort internal/oserror internal/safefilepath io path strconv vendor/golang.org/x/net/dns/dnsmessage crypto/internal/nistec/fiat strings hash bytes container/heap crypto/internal/randutil syscall hash/crc32 crypto crypto/rc4 reflect vendor/golang.org/x/text/transform github.com/brentp/irelate/interfaces bufio regexp/syntax net/http/internal/ascii regexp internal/syscall/execenv internal/syscall/unix time crypto/internal/nistec internal/fmtsort encoding/binary github.com/BurntSushi/toml/internal io/fs context internal/poll encoding/base64 crypto/md5 crypto/cipher vendor/golang.org/x/crypto/internal/poly1305 crypto/internal/edwards25519/field vendor/golang.org/x/crypto/curve25519/internal/field os encoding/pem crypto/internal/edwards25519 crypto/internal/boring crypto/des vendor/golang.org/x/crypto/chacha20 crypto/sha512 crypto/hmac crypto/aes crypto/sha1 crypto/sha256 vendor/golang.org/x/crypto/chacha20poly1305 vendor/golang.org/x/crypto/hkdf internal/godebug fmt io/ioutil path/filepath internal/intern net/netip os/exec net flag encoding/hex github.com/pkg/errors github.com/yuin/gopher-lua/ast github.com/yuin/gopher-lua/pm encoding/csv net/url log mime encoding/json vendor/golang.org/x/crypto/curve25519 vendor/golang.org/x/net/http2/hpack compress/flate math/big vendor/golang.org/x/text/unicode/norm mime/quotedprintable net/http/internal os/user github.com/brentp/vcfgo github.com/yuin/gopher-lua/parse vendor/golang.org/x/text/unicode/bidi compress/gzip github.com/klauspost/compress/flate github.com/biogo/hts/bgzf vendor/golang.org/x/text/secure/bidirule github.com/yuin/gopher-lua github.com/BurntSushi/toml vendor/golang.org/x/net/idna github.com/biogo/hts/bgzf/index github.com/biogo/hts/csi github.com/biogo/hts/internal github.com/biogo/hts/tabix github.com/biogo/hts/sam crypto/rand crypto/elliptic crypto/internal/boring/bbig crypto/dsa github.com/klauspost/pgzip encoding/asn1 crypto/ed25519 crypto/rsa crypto/x509/pkix vendor/golang.org/x/crypto/cryptobyte github.com/biogo/hts/bam github.com/brentp/irelate/parsers crypto/ecdsa github.com/brentp/bix github.com/yuin/gluare github.com/brentp/irelate github.com/brentp/goluaez github.com/brentp/vcfanno/api vendor/golang.org/x/net/http/httpproxy net/textproto crypto/x509 vendor/golang.org/x/net/http/httpguts mime/multipart crypto/tls net/http/httptrace net/http github.com/shenwei356/xopen github.com/brentp/vcfanno/shared github.com/brentp/vcfanno dh_auto_test -O--buildsystem=golang cd obj-i686-linux-gnu && go test -vet=off -v -p 16 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared testing: warning: no tests to run PASS ok github.com/brentp/vcfanno 0.008s [no tests to run] === RUN Test OK: 13 passed --- PASS: Test (0.02s) === RUN TestHandleA --- PASS: TestHandleA (0.00s) === RUN TestHandlAMulti --- PASS: TestHandlAMulti (0.00s) === RUN TestByAlt --- PASS: TestByAlt (0.00s) PASS ok github.com/brentp/vcfanno/api 0.030s ? github.com/brentp/vcfanno/shared [no test files] create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=golang dh_prep -O--buildsystem=golang debian/rules override_dh_auto_install make[1]: Entering directory '/build/vcfanno-0.3.5+ds' dh_auto_install -- --no-source cd obj-i686-linux-gnu && mkdir -p /build/vcfanno-0.3.5\+ds/debian/tmp/usr cd obj-i686-linux-gnu && cp -r bin /build/vcfanno-0.3.5\+ds/debian/tmp/usr make[1]: Leaving directory '/build/vcfanno-0.3.5+ds' dh_install -O--buildsystem=golang debian/rules override_dh_installdocs make[1]: Entering directory '/build/vcfanno-0.3.5+ds' # Regenerate bam and bam index file cat debian/missing-sources/ex.sam| samtools view -Sb - > example/ex.bam samtools index example/ex.bam example/ex.bam.bai # Remove corrupt gz file rm -rf tests/notbgz/notbgz.vcf.gz # Regenerate all .tbi files tabix example/exac.vcf.gz tabix example/fitcons.bed.gz tabix tests/astar/astar.anno.vcf.gz tabix tests/by_alt_float/annotation.tsv.gz [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "2 41647 A G 0.591814 8.493" tabix tests/citest/at/testexon.bed.gz tabix tests/citest/dummyexons.bed.gz tabix tests/data/multiple-alts.vcf.gz tabix tests/data/number.vcf.gz tabix tests/dbnsfp/dbNSFP_example.txt.gz [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072302 17072302 G A A V . 22 16591412 22 15452302 CCT8L2 - GCC 2 0 g G/G G/G ENSG00000198445 ENST00000359963 ENSP00000353048 380 0.01 0.56404 D Q96SF2 TCPQM_HUMAN 380 0.789 0.42612 P 0.542 0.47084 P 0.904520 0.08589 U 0.938783 0.885143 0.27956 N simple_aae A380V TCPQL_HUMAN A380V 2.93 0.84781 M 2.34 0.16357 T -3.1 0.63513 D NM_014406.4 A380V 0.141 0.16484 -1.0168 0.24741 T 0.0721 0.29265 T 10 5.216332 0.70443 25.6 0.99874441920417656 0.95120 0.57787 0.30213 DAEFGBI 0.140898394235071 3.051114 0.48442 0.0299346018802206 0.41293 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 4.018000 0.56642 0.572000 0.28477 0.997000 0.39909 0.411000 0.25598 0.0:0.0:1.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072302 17072302 G C A G . 22 16591412 22 15452302 CCT8L2 - GCC 2 0 g G/G G/G ENSG00000198445 ENST00000359963 ENSP00000353048 380 0.033 0.44307 D Q96SF2 TCPQM_HUMAN 380 0.09 0.23627 B 0.07 0.26378 B 0.904520 0.08589 U 0.938783 0.903476 0.27629 N simple_aae A380G TCPQL_HUMAN A380G 2.93 0.84781 M 2.51 0.14293 T -2.32 0.51437 N NM_014406.4 A380G 0.103 0.10746 -0.8882 0.49115 T 0.0370 0.15942 T 10 3.370940 0.46354 22.9 0.99354601284678379 0.60415 0.63209 0.31754 DAEFGBI -0.422298261850935 1.3349 0.24762 -0.399121413419092 0.24558 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 4.018000 0.56642 0.572000 0.28477 0.997000 0.39909 0.411000 0.25598 0.0:0.0:1.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072302 17072302 G T A D . 22 16591412 22 15452302 CCT8L2 - GCC 2 0 g G/G G/G ENSG00000198445 ENST00000359963 ENSP00000353048 380 0.004 0.65363 D Q96SF2 TCPQM_HUMAN 380 0.992 0.62897 D 0.889 0.61317 P 0.904520 0.08589 U 0.938783 0.641363 0.30591 N simple_aae A380D TCPQL_HUMAN A380D 2.93 0.84781 M 2.38 0.15849 T -3.02 0.62590 D NM_014406.4 A380D 0.399 0.45798 -0.9564 0.39865 T 0.0994 0.37051 T 10 5.077183 0.68398 25.3 0.99680235566444375 0.79002 0.61538 0.31252 DAEFGBI 0.302961726972868 3.794568 0.56349 0.143990621275748 0.47151 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 4.018000 0.56642 0.572000 0.28477 0.997000 0.39909 0.411000 0.25598 0.0:0.0:1.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072303 17072303 C A A S . 22 16591413 22 15452303 CCT8L2 - GCC 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 380 1.0 0.00963 T Q96SF2 TCPQM_HUMAN 380 0.09 0.23627 B 0.07 0.26378 B 0.904520 0.08589 N 0.938783 0.988396 0.24389 N simple_aae A380S TCPQL_HUMAN A380S 0.93 0.23636 L 2.52 0.14169 T -0.05 0.07751 N NM_014406.4 A380S 0.072 0.06067 -0.9413 0.42435 T 0.0190 0.07938 T 10 0.328585 0.12563 5.967 0.75658077739943641 0.10790 0.01742 0.05435 NAEFGBI -0.952241553466705 0.4572448 0.09664 -0.959672568167129 0.10513 0.00151714177988376 0.08643 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 -0.865 0.10073 0.035000 0.13577 0.514000 0.28085 0.097000 0.22520 0.417000 0.25698 0.2835:0.437:0.2795:0.0 3.6701 0.07747 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072303 17072303 C G A P . 22 16591413 22 15452303 CCT8L2 - GCC 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 380 0.168 0.22973 T Q96SF2 TCPQM_HUMAN 380 0.231 0.28914 B 0.179 0.34149 B 0.904520 0.08589 N 0.938783 0.910584 0.27489 N simple_aae A380P TCPQL_HUMAN A380P 1.83 0.48223 L 2.43 0.15268 T -2.6 0.55938 D NM_014406.4 A380P 0.246 0.30065 -0.9532 0.40439 T 0.0355 0.15290 T 10 1.588787 0.25254 13.79 0.97019856529327109 0.31467 0.02096 0.06147 NAEFGBI -0.653690275480882 0.8922109 0.17411 -0.724371843784986 0.16073 0.00151714177988376 0.08643 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 -0.865 0.10073 0.035000 0.13577 0.514000 0.28085 0.097000 0.22520 0.417000 0.25698 0.2835:0.437:0.2795:0.0 3.6701 0.07747 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072303 17072303 C T A T . 22 16591413 22 15452303 CCT8L2 - GCC 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 380 0.011 0.55478 D Q96SF2 TCPQM_HUMAN 380 0.62 0.38009 P 0.42 0.43281 B 0.904520 0.08589 U 0.938783 0.974599 0.25456 N simple_aae A380T TCPQL_HUMAN A380T 2.93 0.84781 M 2.38 0.15849 T -1.63 0.39092 N NM_014406.4 A380T 0.116 0.12740 -0.9890 0.32851 T 0.0565 0.23792 T 10 4.977856 0.66957 25.1 0.99619336564501015 0.75088 0.02107 0.06169 NAEFGBI -0.366914589131182 1.4564 0.26729 -0.531429606692027 0.20917 0.00151714177988376 0.08643 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 -0.865 0.10073 0.035000 0.13577 0.514000 0.28085 0.097000 0.22520 0.417000 0.25698 0.2835:0.437:0.2795:0.0 3.6701 0.07747 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072305 17072305 C A G V . 22 16591415 22 15452305 CCT8L2 - GGA 2 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 0.001 0.78421 D Q96SF2 TCPQM_HUMAN 379 1.0 0.89865 D 0.997 0.85043 D 0.001429 0.39031 U 0.000000 0.999999 0.58814 D simple_aae G379V TCPQL_HUMAN G379V 3.235 0.89818 M 0.17 0.60507 T -8.34 0.97032 D NM_014406.4 G379V 0.823 0.81093 -0.3590 0.73312 T 0.3588 0.72112 T 10 5.317930 0.71958 25.8 0.99597950363474697 0.73827 0.12361 0.17034 NAEFGBI 0.180546234526767 3.218253 0.50322 -0.032189250061603 0.38380 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 0.304000 0.18840 0.514000 0.28085 0.101000 0.22602 0.430000 0.25913 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072305 17072305 C G G A . 22 16591415 22 15452305 CCT8L2 - GGA 2 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 0.027 0.46462 D Q96SF2 TCPQM_HUMAN 379 0.967 0.54448 D 0.893 0.61563 P 0.001429 0.39031 U 0.000000 0.96704 0.38563 D simple_aae G379A TCPQL_HUMAN G379A 2.085 0.57921 M 0.23 0.59737 T -5.51 0.85890 D NM_014406.4 G379A 0.638 0.65489 -0.5215 0.67883 T 0.2845 0.65659 T 10 1.587093 0.25234 13.78 0.95704074870341493 0.27016 0.10995 0.16155 N AEFGBI 0.0767559827490708 2.795521 0.45442 -0.102097947215648 0.35323 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 0.304000 0.18840 0.514000 0.28085 0.101000 0.22602 0.430000 0.25913 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072305 17072305 C T G E . 22 16591415 22 15452305 CCT8L2 - GGA 2 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 0.001 0.78421 D Q96SF2 TCPQM_HUMAN 379 1.0 0.89865 D 0.998 0.87503 D 0.001429 0.39031 U 0.000000 0.987014 0.40521 D simple_aae G379E TCPQL_HUMAN G379E 3.235 0.89818 M 0.19 0.60258 T -7.3 0.94470 D NM_014406.4 G379E 0.87 0.85752 -0.3469 0.73662 T 0.3588 0.72112 T 10 4.934483 0.66331 25.0 0.99672190146911999 0.78475 0.09552 0.15110 NAEFGBI 0.180844068315063 3.219533 0.50337 -0.0319789254027045 0.38387 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 0.304000 0.18840 0.514000 0.28085 0.101000 0.22602 0.430000 0.25913 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072306 17072306 C A G X . 22 16591416 22 15452306 CCT8L2 - GGA 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 . . . . . . . . . . . . 0.001429 0.39031 U 0.000000 1 0.81033 D complex_aae G379* TCPQL_HUMAN G379* . . . . . . . . . . . . . . . . . . . . 10.820180 0.97019 36 0.99023181097119439 0.50228 0.42257 0.26601 N AEFGBI 0.602300241062557 5.946894 0.73340 0.306416110176004 0.56174 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 3.203000 0.50530 0.514000 0.28085 0.341000 0.25456 0.437000 0.26030 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072306 17072306 C G G R . 22 16591416 22 15452306 CCT8L2 - GGA 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 0.0 0.91219 D Q96SF2 TCPQM_HUMAN 379 1.0 0.89865 D 0.999 0.91584 D 0.001429 0.39031 U 0.000000 0.988568 0.40787 D simple_aae G379R TCPQL_HUMAN G379R 3.235 0.89818 M 0.18 0.60383 T -7.44 0.94858 D NM_014406.4 G379R 0.835 0.82245 -0.3469 0.73662 T 0.3588 0.72112 T 10 5.462289 0.74129 26.1 0.99854462032636349 0.93313 0.43619 0.26900 NAEFGBI 0.317324963236638 3.869725 0.57083 0.12440239999813 0.46107 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 3.203000 0.50530 0.514000 0.28085 0.341000 0.25456 0.437000 0.26030 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072306 17072306 C T G R rs764133439 22 16591416 22 15452306 CCT8L2 - GGA 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 0.0 0.91219 D Q96SF2 TCPQM_HUMAN 379 1.0 0.89865 D 0.999 0.91584 D 0.001429 0.39031 U 0.000000 0.988568 0.40787 D simple_aae G379R TCPQL_HUMAN G379R 3.235 0.89818 M 0.18 0.60383 T -7.44 0.94858 D NM_014406.4 G379R 0.835 0.82245 -0.3469 0.73662 T 0.3588 0.72112 T 10 5.691531 0.77646 26.8 0.9985436076811024 0.93313 0.36787 0.25383 N AEFGBI 0.317324963236638 3.869725 0.57083 0.12440239999813 0.46107 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 3.203000 0.50530 0.514000 0.28085 0.341000 0.25456 0.437000 0.26030 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . 2 1.647e-05 2 1.647e-05 0 0 2 1.727e-04 0 0 0 0 0 0 0 0 21.883e-05 2 1.883e-05 0 0 2 1.783e-04 0 0 0 0 0 0 0 0 2 2.204e-05 2 2.204e-05 0 0 2 1.729e-04 0 0 0 0 0 0 0 0 . . . . TCP-1-like chaperonin intermediate domain . ." tabix tests/dbnsfp/dbNSFP_ex.txt.gz [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072301 17072302 G A A V . 22 16591412 22 15452302 CCT8L2 - GCC 2 0 g G/G G/G ENSG00000198445 ENST00000359963 ENSP00000353048 380 0.01 0.56404 D Q96SF2 TCPQM_HUMAN 380 0.789 0.42612 P 0.542 0.47084 P 0.904520 0.08589 U 0.938783 0.885143 0.27956 N simple_aae A380V TCPQL_HUMAN A380V 2.93 0.84781 M 2.34 0.16357 T -3.1 0.63513 D NM_014406.4 A380V 0.141 0.16484 -1.0168 0.24741 T 0.0721 0.29265 T 10 5.216332 0.70443 25.6 0.99874441920417656 0.95120 0.57787 0.30213 DAEFGBI 0.140898394235071 3.051114 0.48442 0.0299346018802206 0.41293 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 4.018000 0.56642 0.572000 0.28477 0.997000 0.39909 0.411000 0.25598 0.0:0.0:1.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072301 17072302 G C A G . 22 16591412 22 15452302 CCT8L2 - GCC 2 0 g G/G G/G ENSG00000198445 ENST00000359963 ENSP00000353048 380 0.033 0.44307 D Q96SF2 TCPQM_HUMAN 380 0.09 0.23627 B 0.07 0.26378 B 0.904520 0.08589 U 0.938783 0.903476 0.27629 N simple_aae A380G TCPQL_HUMAN A380G 2.93 0.84781 M 2.51 0.14293 T -2.32 0.51437 N NM_014406.4 A380G 0.103 0.10746 -0.8882 0.49115 T 0.0370 0.15942 T 10 3.370940 0.46354 22.9 0.99354601284678379 0.60415 0.63209 0.31754 DAEFGBI -0.422298261850935 1.3349 0.24762 -0.399121413419092 0.24558 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 4.018000 0.56642 0.572000 0.28477 0.997000 0.39909 0.411000 0.25598 0.0:0.0:1.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072301 17072302 G T A D . 22 16591412 22 15452302 CCT8L2 - GCC 2 0 g G/G G/G ENSG00000198445 ENST00000359963 ENSP00000353048 380 0.004 0.65363 D Q96SF2 TCPQM_HUMAN 380 0.992 0.62897 D 0.889 0.61317 P 0.904520 0.08589 U 0.938783 0.641363 0.30591 N simple_aae A380D TCPQL_HUMAN A380D 2.93 0.84781 M 2.38 0.15849 T -3.02 0.62590 D NM_014406.4 A380D 0.399 0.45798 -0.9564 0.39865 T 0.0994 0.37051 T 10 5.077183 0.68398 25.3 0.99680235566444375 0.79002 0.61538 0.31252 DAEFGBI 0.302961726972868 3.794568 0.56349 0.143990621275748 0.47151 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 4.018000 0.56642 0.572000 0.28477 0.997000 0.39909 0.411000 0.25598 0.0:0.0:1.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072302 17072303 C A A S . 22 16591413 22 15452303 CCT8L2 - GCC 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 380 1.0 0.00963 T Q96SF2 TCPQM_HUMAN 380 0.09 0.23627 B 0.07 0.26378 B 0.904520 0.08589 N 0.938783 0.988396 0.24389 N simple_aae A380S TCPQL_HUMAN A380S 0.93 0.23636 L 2.52 0.14169 T -0.05 0.07751 N NM_014406.4 A380S 0.072 0.06067 -0.9413 0.42435 T 0.0190 0.07938 T 10 0.328585 0.12563 5.967 0.75658077739943641 0.10790 0.01742 0.05435 NAEFGBI -0.952241553466705 0.4572448 0.09664 -0.959672568167129 0.10513 0.00151714177988376 0.08643 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 -0.865 0.10073 0.035000 0.13577 0.514000 0.28085 0.097000 0.22520 0.417000 0.25698 0.2835:0.437:0.2795:0.0 3.6701 0.07747 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072302 17072303 C G A P . 22 16591413 22 15452303 CCT8L2 - GCC 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 380 0.168 0.22973 T Q96SF2 TCPQM_HUMAN 380 0.231 0.28914 B 0.179 0.34149 B 0.904520 0.08589 N 0.938783 0.910584 0.27489 N simple_aae A380P TCPQL_HUMAN A380P 1.83 0.48223 L 2.43 0.15268 T -2.6 0.55938 D NM_014406.4 A380P 0.246 0.30065 -0.9532 0.40439 T 0.0355 0.15290 T 10 1.588787 0.25254 13.79 0.97019856529327109 0.31467 0.02096 0.06147 NAEFGBI -0.653690275480882 0.8922109 0.17411 -0.724371843784986 0.16073 0.00151714177988376 0.08643 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 -0.865 0.10073 0.035000 0.13577 0.514000 0.28085 0.097000 0.22520 0.417000 0.25698 0.2835:0.437:0.2795:0.0 3.6701 0.07747 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072302 17072303 C T A T . 22 16591413 22 15452303 CCT8L2 - GCC 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 380 0.011 0.55478 D Q96SF2 TCPQM_HUMAN 380 0.62 0.38009 P 0.42 0.43281 B 0.904520 0.08589 U 0.938783 0.974599 0.25456 N simple_aae A380T TCPQL_HUMAN A380T 2.93 0.84781 M 2.38 0.15849 T -1.63 0.39092 N NM_014406.4 A380T 0.116 0.12740 -0.9890 0.32851 T 0.0565 0.23792 T 10 4.977856 0.66957 25.1 0.99619336564501015 0.75088 0.02107 0.06169 NAEFGBI -0.366914589131182 1.4564 0.26729 -0.531429606692027 0.20917 0.00151714177988376 0.08643 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 -0.865 0.10073 0.035000 0.13577 0.514000 0.28085 0.097000 0.22520 0.417000 0.25698 0.2835:0.437:0.2795:0.0 3.6701 0.07747 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072304 17072305 C A G V . 22 16591415 22 15452305 CCT8L2 - GGA 2 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 0.001 0.78421 D Q96SF2 TCPQM_HUMAN 379 1.0 0.89865 D 0.997 0.85043 D 0.001429 0.39031 U 0.000000 0.999999 0.58814 D simple_aae G379V TCPQL_HUMAN G379V 3.235 0.89818 M 0.17 0.60507 T -8.34 0.97032 D NM_014406.4 G379V 0.823 0.81093 -0.3590 0.73312 T 0.3588 0.72112 T 10 5.317930 0.71958 25.8 0.99597950363474697 0.73827 0.12361 0.17034 NAEFGBI 0.180546234526767 3.218253 0.50322 -0.032189250061603 0.38380 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 0.304000 0.18840 0.514000 0.28085 0.101000 0.22602 0.430000 0.25913 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072304 17072305 C G G A . 22 16591415 22 15452305 CCT8L2 - GGA 2 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 0.027 0.46462 D Q96SF2 TCPQM_HUMAN 379 0.967 0.54448 D 0.893 0.61563 P 0.001429 0.39031 U 0.000000 0.96704 0.38563 D simple_aae G379A TCPQL_HUMAN G379A 2.085 0.57921 M 0.23 0.59737 T -5.51 0.85890 D NM_014406.4 G379A 0.638 0.65489 -0.5215 0.67883 T 0.2845 0.65659 T 10 1.587093 0.25234 13.78 0.95704074870341493 0.27016 0.10995 0.16155 N AEFGBI 0.0767559827490708 2.795521 0.45442 -0.102097947215648 0.35323 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 0.304000 0.18840 0.514000 0.28085 0.101000 0.22602 0.430000 0.25913 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072304 17072305 C T G E . 22 16591415 22 15452305 CCT8L2 - GGA 2 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 0.001 0.78421 D Q96SF2 TCPQM_HUMAN 379 1.0 0.89865 D 0.998 0.87503 D 0.001429 0.39031 U 0.000000 0.987014 0.40521 D simple_aae G379E TCPQL_HUMAN G379E 3.235 0.89818 M 0.19 0.60258 T -7.3 0.94470 D NM_014406.4 G379E 0.87 0.85752 -0.3469 0.73662 T 0.3588 0.72112 T 10 4.934483 0.66331 25.0 0.99672190146911999 0.78475 0.09552 0.15110 NAEFGBI 0.180844068315063 3.219533 0.50337 -0.0319789254027045 0.38387 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 0.304000 0.18840 0.514000 0.28085 0.101000 0.22602 0.430000 0.25913 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072305 17072306 C A G X . 22 16591416 22 15452306 CCT8L2 - GGA 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 . . . . . . . . . . . . 0.001429 0.39031 U 0.000000 1 0.81033 D complex_aae G379* TCPQL_HUMAN G379* . . . . . . . . . . . . . . . . . . . . 10.820180 0.97019 36 0.99023181097119439 0.50228 0.42257 0.26601 N AEFGBI 0.602300241062557 5.946894 0.73340 0.306416110176004 0.56174 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 3.203000 0.50530 0.514000 0.28085 0.341000 0.25456 0.437000 0.26030 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072305 17072306 C G G R . 22 16591416 22 15452306 CCT8L2 - GGA 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 0.0 0.91219 D Q96SF2 TCPQM_HUMAN 379 1.0 0.89865 D 0.999 0.91584 D 0.001429 0.39031 U 0.000000 0.988568 0.40787 D simple_aae G379R TCPQL_HUMAN G379R 3.235 0.89818 M 0.18 0.60383 T -7.44 0.94858 D NM_014406.4 G379R 0.835 0.82245 -0.3469 0.73662 T 0.3588 0.72112 T 10 5.462289 0.74129 26.1 0.99854462032636349 0.93313 0.43619 0.26900 NAEFGBI 0.317324963236638 3.869725 0.57083 0.12440239999813 0.46107 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 3.203000 0.50530 0.514000 0.28085 0.341000 0.25456 0.437000 0.26030 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCP-1-like chaperonin intermediate domain . ." [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "22 17072305 17072306 C T G R rs764133439 22 16591416 22 15452306 CCT8L2 - GGA 1 0 c C/C C/C ENSG00000198445 ENST00000359963 ENSP00000353048 379 0.0 0.91219 D Q96SF2 TCPQM_HUMAN 379 1.0 0.89865 D 0.999 0.91584 D 0.001429 0.39031 U 0.000000 0.988568 0.40787 D simple_aae G379R TCPQL_HUMAN G379R 3.235 0.89818 M 0.18 0.60383 T -7.44 0.94858 D NM_014406.4 G379R 0.835 0.82245 -0.3469 0.73662 T 0.3588 0.72112 T 10 5.691531 0.77646 26.8 0.9985436076811024 0.93313 0.36787 0.25383 N AEFGBI 0.317324963236638 3.869725 0.57083 0.12440239999813 0.46107 0.00799435000615469 0.11615 0.487112 0.13308 0 0.573888 0.26071 0 0.547309 0.14640 0 0.564101 0.26208 0 1.98 1.98 0.25231 3.203000 0.50530 0.514000 0.28085 0.341000 0.25456 0.437000 0.26030 0.0:1.0:0.0:0.0 7.4423 0.26198 . . . . . . . . . . . . . . . . . . . . 2 1.647e-05 2 1.647e-05 0 0 2 1.727e-04 0 0 0 0 0 0 0 0 21.883e-05 2 1.883e-05 0 0 2 1.783e-04 0 0 0 0 0 0 0 0 2 2.204e-05 2 2.204e-05 0 0 2 1.729e-04 0 0 0 0 0 0 0 0 . . . . TCP-1-like chaperonin intermediate domain . ." tabix tests/id-test/cosmic.small.vcf.gz tabix tests/id-test/dbsnp.small.vcf.gz tabix tests/id-test/small.vcf.gz tabix tests/multiple-alts/ma-db.vcf.gz tabix tests/notbgz/gno.vcf.gz tabix tests/overwrite-multiple-alts/a/whole.vcf.gz tabix tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz tabix tests/overwrite-multiple-alts/b/whole_genome_snv_slice.vcf.gz tabix tests/ref-alt-test/tmp_annotation.txt.gz [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "1 14397 rs756427959 CTGT C 530 71 0.1340 194 71 0 460 59 0.1283 171 59 0 304 36 0.1184 116 36 0 94 11 0.1170 36 11 0" [E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used? The offending line was: "1 14397 rs756427959 CTGT CT 530 0 0.0000 265 0 0 460 0 0.0000 230 0 0 304 0 0.0000 152 0 0 94 0 0.0000 47 0 0" tabix tests/ref-alt-test/tmp_calls.vcf.gz tabix tests/testVA/test-gnomad.vcf.gz tabix docs/examples/gff_sv/genes.gff3.gz dh_installdocs make[1]: Leaving directory '/build/vcfanno-0.3.5+ds' dh_installchangelogs -O--buildsystem=golang dh_installman -O--buildsystem=golang dh_installsystemduser -O--buildsystem=golang dh_perl -O--buildsystem=golang dh_link -O--buildsystem=golang dh_strip_nondeterminism -O--buildsystem=golang dh_compress -O--buildsystem=golang dh_fixperms -O--buildsystem=golang dh_missing -O--buildsystem=golang dh_strip -a -O--buildsystem=golang dh_makeshlibs -a -O--buildsystem=golang dh_shlibdeps -a -O--buildsystem=golang dh_installdeb -O--buildsystem=golang dh_golang -O--buildsystem=golang dh_gencontrol -O--buildsystem=golang dpkg-gencontrol: warning: package vcfanno: substitution variable ${misc:Static-Built-Using} unused, but is defined dpkg-gencontrol: warning: Depends field of package vcfanno-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package vcfanno: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--buildsystem=golang dh_builddeb -O--buildsystem=golang dpkg-deb: building package 'vcfanno-examples' in '../vcfanno-examples_0.3.5+ds-1_all.deb'. dpkg-deb: building package 'vcfanno-dbgsym' in '../vcfanno-dbgsym_0.3.5+ds-1_i386.deb'. dpkg-deb: building package 'vcfanno' in '../vcfanno_0.3.5+ds-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../vcfanno_0.3.5+ds-1_i386.buildinfo dpkg-genchanges --build=binary -O../vcfanno_0.3.5+ds-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3800 and its subdirectories I: Current time: Sat Jun 8 16:02:50 -12 2024 I: pbuilder-time-stamp: 1717905770 Sun May 7 21:39:53 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Sun May 7 21:39:53 UTC 2023 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Sun May 7 21:41:15 UTC 2023 I: Deleting $TMPDIR on ionos12-i386.debian.net. Sun May 7 21:41:15 UTC 2023 I: vcfanno_0.3.5+ds-1_i386.changes: Format: 1.8 Date: Sat, 31 Dec 2022 17:14:51 +0530 Source: vcfanno Binary: vcfanno vcfanno-dbgsym vcfanno-examples Architecture: i386 all Version: 0.3.5+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: vcfanno - annotate a VCF with other VCFs/BEDs/tabixed files vcfanno-examples - examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed Changes: vcfanno (0.3.5+ds-1) unstable; urgency=medium . * New upstream version 0.3.5+ds * Bump Standards-Version to 4.6.2 (no changes needed) Checksums-Sha1: ff54d250217d6f3f03be857e614141379cbdf8e9 2420732 vcfanno-dbgsym_0.3.5+ds-1_i386.deb a7d16bf690b9d1dd61509c317901d3aebba3593b 5713732 vcfanno-examples_0.3.5+ds-1_all.deb d1c289c2b805ef734ea59965c5902958ad3a6475 7362 vcfanno_0.3.5+ds-1_i386.buildinfo 6abc6a6bffeae640f06591733155ff77b87d0fd1 2094880 vcfanno_0.3.5+ds-1_i386.deb Checksums-Sha256: 380e68e54506660cd421b9a427a6e7580f2f03bc24ea35cd9596886c31404a94 2420732 vcfanno-dbgsym_0.3.5+ds-1_i386.deb 9add7b7a5b74fc3c24c5590b6fb2ddab080023743e98df07172fb403e3450b61 5713732 vcfanno-examples_0.3.5+ds-1_all.deb e1a0cf6a34f0143014e9088722fb4bbbabdf1fa78a39d1300a0c4ca2c591cb3e 7362 vcfanno_0.3.5+ds-1_i386.buildinfo 8d70a041cead40046227ff09a9cc740fd4a484b5d8e9642d3f72fafa74dcb725 2094880 vcfanno_0.3.5+ds-1_i386.deb Files: bf4c9227abf5d2de6714ce0456544f98 2420732 debug optional vcfanno-dbgsym_0.3.5+ds-1_i386.deb 93e09e63e35d25d734b5f6a1bc633ee7 5713732 science optional vcfanno-examples_0.3.5+ds-1_all.deb 8a85df483d3740cd872a61a91d2e8f62 7362 science optional vcfanno_0.3.5+ds-1_i386.buildinfo cadbf764071178d5ee26e72e3b64fedd 2094880 science optional vcfanno_0.3.5+ds-1_i386.deb Sun May 7 21:41:18 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1eZTK9eN/vcfanno_0.3.5+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1eZTK9eN/vcfanno_0.3.5+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1eZTK9eN/vcfanno_0.3.5+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1eZTK9eN/b1/vcfanno_0.3.5+ds-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.1eZTK9eN/b2/vcfanno_0.3.5+ds-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.333s) 2.333s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.257s) 0.257s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sun May 7 21:42:00 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Sun May 7 21:42:00 UTC 2023 I: vcfanno from bookworm built successfully and reproducibly on i386. Sun May 7 21:42:02 UTC 2023 I: Submitting .buildinfo files to external archives: Sun May 7 21:42:02 UTC 2023 I: Submitting 12K b1/vcfanno_0.3.5+ds-1_i386.buildinfo.asc Sun May 7 21:42:04 UTC 2023 I: Submitting 12K b2/vcfanno_0.3.5+ds-1_i386.buildinfo.asc Sun May 7 21:42:09 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 7 21:42:09 UTC 2023 I: Done submitting .buildinfo files. Sun May 7 21:42:09 UTC 2023 I: Removing signed vcfanno_0.3.5+ds-1_i386.buildinfo.asc files: removed './b1/vcfanno_0.3.5+ds-1_i386.buildinfo.asc' removed './b2/vcfanno_0.3.5+ds-1_i386.buildinfo.asc'