Wed Jan 17 02:40:54 UTC 2024 I: starting to build twopaco/bookworm/i386 on jenkins on '2024-01-17 02:40' Wed Jan 17 02:40:54 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/11619/console.log Wed Jan 17 02:40:54 UTC 2024 I: Downloading source for bookworm/twopaco=1.0.0+dfsg-1 --2024-01-17 02:40:54-- http://cdn-fastly.deb.debian.org/debian/pool/main/t/twopaco/twopaco_1.0.0%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2022 (2.0K) [text/prs.lines.tag] Saving to: ‘twopaco_1.0.0+dfsg-1.dsc’ 0K . 100% 1.95M=0.001s 2024-01-17 02:40:54 (1.95 MB/s) - ‘twopaco_1.0.0+dfsg-1.dsc’ saved [2022/2022] Wed Jan 17 02:40:54 UTC 2024 I: twopaco_1.0.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: twopaco Binary: twopaco Architecture: any Version: 1.0.0+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/medvedevgroup/TwoPaCo Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/twopaco Vcs-Git: https://salsa.debian.org/med-team/twopaco.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libtbb-dev, libtclap-dev Package-List: twopaco deb science optional arch=any Checksums-Sha1: 7ac2cf80ebf233ce853c55191f3ca0bfa5b583d0 179408 twopaco_1.0.0+dfsg.orig.tar.xz 86df1a2f68e225530f500de5903ab7170e0f5640 5356 twopaco_1.0.0+dfsg-1.debian.tar.xz Checksums-Sha256: 0ec51c6c6d1ae2cbf470600ea90109d9401e00eae5a042e570e50c49ef636e38 179408 twopaco_1.0.0+dfsg.orig.tar.xz 63a88dbcacb9c2da0f4353aa54d80d6b64262890b853bf17a886a228e2a5f42c 5356 twopaco_1.0.0+dfsg-1.debian.tar.xz Files: c460fdfe40ff4d13f4bb78320a526fba 179408 twopaco_1.0.0+dfsg.orig.tar.xz 7629a6586711642df0b2728632bce45d 5356 twopaco_1.0.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmM1MtgSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHMLoP/0W2fRLON9c9KtktzZwFVBoTVn4p2wj6 +hVsxZvhzH5PNI/4mKBUMyrjR9qhmUgUD/G63+uV45jpDhwhR4OGhJukAbStW1pu TPXZ9YOIJ9ol1tX7X6FQuZFOXs3+kFPGcWFC/DlD66ECXrw3Uje1KtE1ASUR18oz cA72B8++w4x57tP/hSlcTwTd/mtxodN+aqCaML7vSIXr4+STZzfQk0Z33TqPCyve uPmYeAU06Cl/hGySraAq3sAzJ2imsK7oTq7AWc4truNefnbzWWyZNsiPT+stjtXJ B/memPdSEtQXhVw+kubVNDb0v6NcNEZKePAlT14vRidsSafZ5nidTHJA7FQ3bFau G9eR5xxR3WpQmaB4eOgab3cvum+eqAu0g+0yNl/w2jaRPjVp37q0Hel1MlM4uGNV DvlW0DqTBKsPQuU4tFNSUDPymV861HYRxL2zuri7VlwTErx2XoQNi06ZBOFIcGsv aoTXetUJjhXyTxxAiSf6PUWDtJgnhGpkxtTomsl5u/AihyqLaYg5jJHFd7+HO48P XAs67ygzGJwHjjeDaj6ODG1P0SLxASuMNQW5NlOJgwn9i28fp4qQOxNKSSsSbJLW OeCmJoc8vn6v1muA8LzPemFhICj9OKQeoWfDx0OiwPq5/1fGNC8L5U9lWtvoNS7C bAh5Uwf+BrCU =vakc -----END PGP SIGNATURE----- Wed Jan 17 02:40:54 UTC 2024 I: Checking whether the package is not for us Wed Jan 17 02:40:54 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Wed Jan 17 02:40:54 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Wed Jan 17 02:44:09 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 16 14:40:59 -12 2024 I: pbuilder-time-stamp: 1705459259 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [twopaco_1.0.0+dfsg-1.dsc] I: copying [./twopaco_1.0.0+dfsg.orig.tar.xz] I: copying [./twopaco_1.0.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 05:53:28 2022 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./twopaco_1.0.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting twopaco in twopaco-1.0.0+dfsg dpkg-source: info: unpacking twopaco_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking twopaco_1.0.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/13609/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5541004f889f4cf7b71c4c57f5a3311d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='13609' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iRbgkh38/pbuilderrc_13F6 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iRbgkh38/b1 --logfile b1/build.log twopaco_1.0.0+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 23 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 23 2023 more -rwsr-xr-x 1 root root 58912 Mar 23 2023 mount -rwxr-xr-x 1 root root 13856 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 23 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 23 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/13609/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libtbb-dev, libtclap-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libtbb-dev; however: Package libtbb-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhwloc15{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtclap-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After unpacking 141 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.3~deb12u1 [720 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libarchive13 i386 3.6.2-1 [385 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1+deb12u1 [80.7 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-10+deb12u4 [424 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libjsoncpp25 i386 1.9.5-4 [86.2 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 librhash0 i386 1.4.3-3 [149 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libuv1 i386 1.44.2-1 [147 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 cmake i386 3.25.1-1 [9767 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libhwloc15 i386 2.9.0-1 [168 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libtbbmalloc2 i386 2021.8.0-2 [45.1 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libtbbbind-2-5 i386 2021.8.0-2 [13.7 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libtbb12 i386 2021.8.0-2 [81.3 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libtbb-dev i386 2021.8.0-2 [192 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libtclap-dev i386 1.2.5-1+b1 [3360 kB] Fetched 37.7 MB in 16s (2359 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_i386.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... 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Setting up autotools-dev (20220109.1) ... Setting up libuv1:i386 (1.44.2-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libproc2-0:i386 (2:4.0.2-3) ... Setting up libhwloc15:i386 (2.9.0-1) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:i386 (1.9.5-4) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up libtclap-dev (1.2.5-1+b1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:i386 (1.4.3-3) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3~deb12u1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:i386 (3.6.2-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up libtbbbind-2-5:i386 (2021.8.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:i386 (7.88.1-10+deb12u4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtbb12:i386 (2021.8.0-2) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.25.1-1) ... Setting up libtbb-dev:i386 (2021.8.0-2) ... Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package twopaco dpkg-buildpackage: info: source version 1.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --sourcedir=src dh_auto_clean -O--sourcedir=src dh_autoreconf_clean -O--sourcedir=src dh_clean -O--sourcedir=src debian/rules binary dh binary --sourcedir=src dh_update_autotools_config -O--sourcedir=src dh_autoreconf -O--sourcedir=src dh_auto_configure -O--sourcedir=src cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu ../src -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu dh_auto_build -O--sourcedir=src cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/depend make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/depend make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump/CMakeFiles/graphdump.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor/CMakeFiles/twopaco.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/build make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/build make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' [ 7%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o [ 14%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o [ 21%] Building CXX object graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o [ 28%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp [ 35%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp [ 42%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp [ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp [ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp [ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp [ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp [ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp [ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In function ‘void GenerateFastaOutput(const std::string&, const std::vector >&, size_t)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:519:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] 519 | std::vector seen(MAX_SEGMENT_NUMBER, 0); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In instantiation of ‘void GenerateGfaOutput(const std::string&, const std::vector >&, size_t, bool, G) [with G = Gfa1Generator; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:676:21: required from here /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:401:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] 401 | std::vector seen(MAX_SEGMENT_NUMBER, 0); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In instantiation of ‘void GenerateGfaOutput(const std::string&, const std::vector >&, size_t, bool, G) [with G = Gfa2Generator; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:685:21: required from here /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:401:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp: In function ‘int main(int, char**)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp:112:25: warning: conversion from ‘long long unsigned int’ to ‘unsigned int’ changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 112 | UINT64_MAX, | ^~~~~~~~~~ [ 92%] Linking CXX executable graphdump cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -o graphdump -ltbb -lpthread make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target graphdump [100%] Linking CXX executable twopaco cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/cmake -E cmake_link_script CMakeFiles/twopaco.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o CMakeFiles/twopaco.dir/constructor.cpp.o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o CMakeFiles/twopaco.dir/compressedstring.cpp.o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o CMakeFiles/twopaco.dir/test.cpp.o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o CMakeFiles/twopaco.dir/common.cpp.o -o twopaco -ltbb -ltbbmalloc -ltbbmalloc_proxy -lpthread make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' [100%] Built target twopaco make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' obj-*/graphconstructor/twopaco --test -f 34 example/example.fa ERROR at chr 0 pos 47, 1 != 0 ERROR at chr 0 pos 193, 1 != 0 ERROR at chr 0 pos 278, 1 != 0 ERROR at chr 0 pos 424, 1 != 0 ERROR at chr 0 pos 535, 1 != 0 ERROR at chr 0 pos 571, 1 != 0 ERROR at chr 0 pos 661, 1 != 0 ERROR at chr 0 pos 681, 1 != 0 ERROR at chr 0 pos 1225, 1 != 0 ERROR at chr 0 pos 1549, 1 != 0 ERROR at chr 0 pos 1660, 1 != 0 ERROR at chr 0 pos 1819, 1 != 0 ERROR at chr 0 pos 1833, 1 != 0 ERROR at chr 0 pos 1914, 1 != 0 ERROR at chr 0 pos 2035, 1 != 0 ERROR at chr 0 pos 2180, 1 != 0 ERROR at chr 0 pos 2211, 1 != 0 ERROR at chr 0 pos 2249, 1 != 0 ERROR at chr 0 pos 2466, 1 != 0 ERROR at chr 0 pos 2554, 1 != 0 ERROR at chr 0 pos 2594, 1 != 0 ERROR at chr 0 pos 2595, 1 != 0 ERROR at chr 0 pos 2729, 1 != 0 ERROR at chr 0 pos 2774, 1 != 0 ERROR at chr 0 pos 2839, 1 != 0 ERROR at chr 0 pos 2845, 1 != 0 ERROR at chr 0 pos 2884, 1 != 0 ERROR at chr 0 pos 2974, 1 != 0 ERROR at chr 0 pos 3021, 1 != 0 ERROR at chr 0 pos 3072, 1 != 0 ERROR at chr 0 pos 3146, 1 != 0 ERROR at chr 0 pos 3435, 1 != 0 ERROR at chr 0 pos 3515, 1 != 0 ERROR at chr 0 pos 3560, 1 != 0 ERROR at chr 0 pos 3669, 1 != 0 ERROR at chr 0 pos 3678, 1 != 0 ERROR at chr 0 pos 3780, 1 != 0 ERROR at chr 0 pos 3799, 1 != 0 ERROR at chr 0 pos 3827, 1 != 0 ERROR at chr 0 pos 3914, 1 != 0 ERROR at chr 0 pos 4175, 1 != 0 ERROR at chr 0 pos 4190, 1 != 0 ERROR at chr 0 pos 4196, 1 != 0 ERROR at chr 0 pos 4230, 1 != 0 ERROR at chr 0 pos 4312, 1 != 0 ERROR at chr 0 pos 4374, 1 != 0 ERROR at chr 0 pos 4460, 1 != 0 ERROR at chr 0 pos 4591, 1 != 0 ERROR at chr 0 pos 4627, 1 != 0 ERROR at chr 0 pos 4628, 1 != 0 ERROR at chr 0 pos 4634, 1 != 0 ERROR at chr 0 pos 4669, 1 != 0 ERROR at chr 0 pos 4725, 1 != 0 ERROR at chr 0 pos 4823, 1 != 0 ERROR at chr 0 pos 4860, 1 != 0 ERROR at chr 0 pos 4938, 1 != 0 ERROR at chr 0 pos 5075, 1 != 0 ERROR at chr 0 pos 5206, 1 != 0 ERROR at chr 0 pos 5363, 1 != 0 ERROR at chr 0 pos 5368, 1 != 0 ERROR at chr 0 pos 5384, 1 != 0 ERROR at chr 0 pos 5389, 1 != 0 ERROR at chr 0 pos 5554, 1 != 0 ERROR at chr 0 pos 5652, 1 != 0 ERROR at chr 0 pos 5671, 1 != 0 ERROR at chr 0 pos 5685, 1 != 0 ERROR at chr 0 pos 5700, 1 != 0 ERROR at chr 0 pos 5748, 1 != 0 ERROR at chr 0 pos 5840, 1 != 0 ERROR at chr 0 pos 5861, 1 != 0 ERROR at chr 0 pos 5876, 1 != 0 ERROR at chr 0 pos 6046, 1 != 0 ERROR at chr 0 pos 6051, 1 != 0 ERROR at chr 0 pos 6119, 1 != 0 ERROR at chr 0 pos 6130, 1 != 0 ERROR at chr 0 pos 6241, 1 != 0 ERROR at chr 0 pos 6290, 1 != 0 ERROR at chr 0 pos 6488, 1 != 0 ERROR at chr 0 pos 6545, 1 != 0 ERROR at chr 0 pos 6610, 1 != 0 ERROR at chr 0 pos 6695, 1 != 0 ERROR at chr 0 pos 6835, 1 != 0 ERROR at chr 0 pos 6870, 1 != 0 ERROR at chr 0 pos 6899, 1 != 0 ERROR at chr 0 pos 6948, 1 != 0 ERROR at chr 0 pos 7035, 1 != 0 ERROR at chr 0 pos 7120, 1 != 0 ERROR at chr 0 pos 7364, 1 != 0 ERROR at chr 0 pos 7374, 1 != 0 ERROR at chr 0 pos 7419, 1 != 0 ERROR at chr 0 pos 7597, 1 != 0 ERROR at chr 0 pos 7617, 1 != 0 ERROR at chr 0 pos 7633, 1 != 0 ERROR at chr 0 pos 7702, 1 != 0 ERROR at chr 0 pos 7720, 1 != 0 ERROR at chr 0 pos 7721, 1 != 0 ERROR at chr 0 pos 7817, 1 != 0 ERROR at chr 0 pos 7823, 1 != 0 ERROR at chr 0 pos 7830, 1 != 0 ERROR at chr 0 pos 7886, 1 != 0 ERROR at chr 0 pos 7901, 1 != 0 ERROR at chr 0 pos 8003, 1 != 0 ERROR at chr 0 pos 8030, 1 != 0 ERROR at chr 0 pos 8059, 1 != 0 ERROR at chr 0 pos 8108, 1 != 0 ERROR at chr 0 pos 8180, 1 != 0 ERROR at chr 0 pos 8198, 1 != 0 ERROR at chr 0 pos 8210, 1 != 0 ERROR at chr 0 pos 8369, 1 != 0 ERROR at chr 0 pos 8470, 1 != 0 ERROR at chr 0 pos 8552, 1 != 0 ERROR at chr 0 pos 8866, 1 != 0 ERROR at chr 1 pos 46, 1 != 0 ERROR at chr 1 pos 104, 1 != 0 ERROR at chr 1 pos 167, 1 != 0 ERROR at chr 1 pos 192, 1 != 0 ERROR at chr 1 pos 225, 1 != 0 ERROR at chr 1 pos 278, 1 != 0 ERROR at chr 1 pos 300, 1 != 0 ERROR at chr 1 pos 320, 1 != 0 ERROR at chr 1 pos 323, 1 != 0 ERROR at chr 1 pos 346, 1 != 0 ERROR at chr 1 pos 402, 1 != 0 ERROR at chr 1 pos 428, 1 != 0 ERROR at chr 1 pos 437, 1 != 0 ERROR at chr 1 pos 539, 1 != 0 ERROR at chr 1 pos 575, 1 != 0 ERROR at chr 1 pos 624, 1 != 0 ERROR at chr 1 pos 653, 1 != 0 ERROR at chr 1 pos 665, 1 != 0 ERROR at chr 1 pos 685, 1 != 0 ERROR at chr 1 pos 931, 1 != 0 ERROR at chr 1 pos 1224, 1 != 0 ERROR at chr 1 pos 1548, 1 != 0 ERROR at chr 1 pos 1660, 1 != 0 ERROR at chr 1 pos 1782, 1 != 0 ERROR at chr 1 pos 1797, 1 != 0 ERROR at chr 1 pos 1799, 1 != 0 ERROR at chr 1 pos 1823, 1 != 0 ERROR at chr 1 pos 1894, 1 != 0 ERROR at chr 1 pos 1959, 1 != 0 ERROR at chr 1 pos 2182, 1 != 0 ERROR at chr 1 pos 2196, 1 != 0 ERROR at chr 1 pos 2251, 1 != 0 ERROR at chr 1 pos 2260, 1 != 0 ERROR at chr 1 pos 2442, 1 != 0 ERROR at chr 1 pos 2470, 1 != 0 ERROR at chr 1 pos 2529, 1 != 0 ERROR at chr 1 pos 2556, 1 != 0 ERROR at chr 1 pos 2595, 1 != 0 ERROR at chr 1 pos 2596, 1 != 0 ERROR at chr 1 pos 2781, 1 != 0 ERROR at chr 1 pos 2847, 1 != 0 ERROR at chr 1 pos 2853, 1 != 0 ERROR at chr 1 pos 2891, 1 != 0 ERROR at chr 1 pos 3030, 1 != 0 ERROR at chr 1 pos 3125, 1 != 0 ERROR at chr 1 pos 3159, 1 != 0 ERROR at chr 1 pos 3447, 1 != 0 ERROR at chr 1 pos 3526, 1 != 0 ERROR at chr 1 pos 3528, 1 != 0 ERROR at chr 1 pos 3559, 1 != 0 ERROR at chr 1 pos 3572, 1 != 0 ERROR at chr 1 pos 3679, 1 != 0 ERROR at chr 1 pos 3688, 1 != 0 ERROR at chr 1 pos 3792, 1 != 0 ERROR at chr 1 pos 3812, 1 != 0 ERROR at chr 1 pos 3840, 1 != 0 ERROR at chr 1 pos 3927, 1 != 0 ERROR at chr 1 pos 4008, 1 != 0 ERROR at chr 1 pos 4105, 1 != 0 ERROR at chr 1 pos 4163, 1 != 0 ERROR at chr 1 pos 4214, 1 != 0 ERROR at chr 1 pos 4248, 1 != 0 ERROR at chr 1 pos 4330, 1 != 0 ERROR at chr 1 pos 4393, 1 != 0 ERROR at chr 1 pos 4472, 1 != 0 ERROR at chr 1 pos 4480, 1 != 0 ERROR at chr 1 pos 4644, 1 != 0 ERROR at chr 1 pos 4645, 1 != 0 ERROR at chr 1 pos 4651, 1 != 0 ERROR at chr 1 pos 4686, 1 != 0 ERROR at chr 1 pos 4692, 1 != 0 ERROR at chr 1 pos 5050, 1 != 0 ERROR at chr 1 pos 5062, 1 != 0 ERROR at chr 1 pos 5090, 1 != 0 ERROR at chr 1 pos 5190, 1 != 0 ERROR at chr 1 pos 5384, 1 != 0 ERROR at chr 1 pos 5438, 1 != 0 ERROR at chr 1 pos 5442, 1 != 0 ERROR at chr 1 pos 5547, 1 != 0 ERROR at chr 1 pos 5548, 1 != 0 ERROR at chr 1 pos 5570, 1 != 0 ERROR at chr 1 pos 5665, 1 != 0 ERROR at chr 1 pos 5698, 1 != 0 ERROR at chr 1 pos 5713, 1 != 0 ERROR at chr 1 pos 5854, 1 != 0 ERROR at chr 1 pos 5859, 1 != 0 ERROR at chr 1 pos 5875, 1 != 0 ERROR at chr 1 pos 5890, 1 != 0 ERROR at chr 1 pos 6009, 1 != 0 ERROR at chr 1 pos 6072, 1 != 0 ERROR at chr 1 pos 6079, 1 != 0 ERROR at chr 1 pos 6150, 1 != 0 ERROR at chr 1 pos 6262, 1 != 0 ERROR at chr 1 pos 6313, 1 != 0 ERROR at chr 1 pos 6370, 1 != 0 ERROR at chr 1 pos 6475, 1 != 0 ERROR at chr 1 pos 6514, 1 != 0 ERROR at chr 1 pos 6574, 1 != 0 ERROR at chr 1 pos 6639, 1 != 0 ERROR at chr 1 pos 6723, 1 != 0 ERROR at chr 1 pos 6902, 1 != 0 ERROR at chr 1 pos 6931, 1 != 0 ERROR at chr 1 pos 6979, 1 != 0 ERROR at chr 1 pos 7065, 1 != 0 ERROR at chr 1 pos 7150, 1 != 0 ERROR at chr 1 pos 7398, 1 != 0 ERROR at chr 1 pos 7407, 1 != 0 ERROR at chr 1 pos 7442, 1 != 0 ERROR at chr 1 pos 7453, 1 != 0 ERROR at chr 1 pos 7491, 1 != 0 ERROR at chr 1 pos 7529, 1 != 0 ERROR at chr 1 pos 7568, 1 != 0 ERROR at chr 1 pos 7633, 1 != 0 ERROR at chr 1 pos 7674, 1 != 0 ERROR at chr 1 pos 7737, 1 != 0 ERROR at chr 1 pos 7756, 1 != 0 ERROR at chr 1 pos 7757, 1 != 0 ERROR at chr 1 pos 7852, 1 != 0 ERROR at chr 1 pos 7858, 1 != 0 ERROR at chr 1 pos 7865, 1 != 0 ERROR at chr 1 pos 7919, 1 != 0 ERROR at chr 1 pos 7934, 1 != 0 ERROR at chr 1 pos 8036, 1 != 0 ERROR at chr 1 pos 8061, 1 != 0 ERROR at chr 1 pos 8139, 1 != 0 ERROR at chr 1 pos 8209, 1 != 0 ERROR at chr 1 pos 8241, 1 != 0 ERROR at chr 1 pos 8331, 1 != 0 ERROR at chr 1 pos 8394, 1 != 0 ERROR at chr 1 pos 8559, 1 != 0 ERROR at chr 1 pos 8597, 1 != 0 ERROR at chr 2 pos 46, 1 != 0 ERROR at chr 2 pos 137, 1 != 0 ERROR at chr 2 pos 139, 1 != 0 ERROR at chr 2 pos 195, 1 != 0 ERROR at chr 2 pos 282, 1 != 0 ERROR at chr 2 pos 298, 1 != 0 ERROR at chr 2 pos 376, 1 != 0 ERROR at chr 2 pos 427, 1 != 0 ERROR at chr 2 pos 536, 1 != 0 ERROR at chr 2 pos 570, 1 != 0 ERROR at chr 2 pos 1196, 1 != 0 ERROR at chr 2 pos 1225, 1 != 0 ERROR at chr 2 pos 1245, 1 != 0 ERROR at chr 2 pos 1439, 1 != 0 ERROR at chr 2 pos 1660, 1 != 0 ERROR at chr 2 pos 1789, 1 != 0 ERROR at chr 2 pos 1835, 1 != 0 ERROR at chr 2 pos 1916, 1 != 0 ERROR at chr 2 pos 2040, 1 != 0 ERROR at chr 2 pos 2047, 1 != 0 ERROR at chr 2 pos 2135, 1 != 0 ERROR at chr 2 pos 2192, 1 != 0 ERROR at chr 2 pos 2222, 1 != 0 ERROR at chr 2 pos 2261, 1 != 0 ERROR at chr 2 pos 2275, 1 != 0 ERROR at chr 2 pos 2432, 1 != 0 ERROR at chr 2 pos 2454, 1 != 0 ERROR at chr 2 pos 2466, 1 != 0 ERROR at chr 2 pos 2477, 1 != 0 ERROR at chr 2 pos 2544, 1 != 0 ERROR at chr 2 pos 2564, 1 != 0 ERROR at chr 2 pos 2788, 1 != 0 ERROR at chr 2 pos 2844, 1 != 0 ERROR at chr 2 pos 2855, 1 != 0 ERROR at chr 2 pos 2861, 1 != 0 ERROR at chr 2 pos 2900, 1 != 0 ERROR at chr 2 pos 2989, 1 != 0 ERROR at chr 2 pos 3037, 1 != 0 ERROR at chr 2 pos 3090, 1 != 0 ERROR at chr 2 pos 3104, 1 != 0 ERROR at chr 2 pos 3163, 1 != 0 ERROR at chr 2 pos 3420, 1 != 0 ERROR at chr 2 pos 3424, 1 != 0 ERROR at chr 2 pos 3455, 1 != 0 ERROR at chr 2 pos 3470, 1 != 0 ERROR at chr 2 pos 3535, 1 != 0 ERROR at chr 2 pos 3580, 1 != 0 ERROR at chr 2 pos 3691, 1 != 0 ERROR at chr 2 pos 3802, 1 != 0 ERROR at chr 2 pos 3821, 1 != 0 ERROR at chr 2 pos 3918, 1 != 0 ERROR at chr 2 pos 3937, 1 != 0 ERROR at chr 2 pos 3976, 1 != 0 ERROR at chr 2 pos 4198, 1 != 0 ERROR at chr 2 pos 4219, 1 != 0 ERROR at chr 2 pos 4338, 1 != 0 ERROR at chr 2 pos 4403, 1 != 0 ERROR at chr 2 pos 4454, 1 != 0 ERROR at chr 2 pos 4512, 1 != 0 ERROR at chr 2 pos 4622, 1 != 0 ERROR at chr 2 pos 4660, 1 != 0 ERROR at chr 2 pos 4661, 1 != 0 ERROR at chr 2 pos 4667, 1 != 0 ERROR at chr 2 pos 4701, 1 != 0 ERROR at chr 2 pos 4757, 1 != 0 ERROR at chr 2 pos 4853, 1 != 0 ERROR at chr 2 pos 4887, 1 != 0 ERROR at chr 2 pos 4964, 1 != 0 ERROR at chr 2 pos 5004, 1 != 0 ERROR at chr 2 pos 5097, 1 != 0 ERROR at chr 2 pos 5278, 1 != 0 ERROR at chr 2 pos 5384, 1 != 0 ERROR at chr 2 pos 5400, 1 != 0 ERROR at chr 2 pos 5405, 1 != 0 ERROR at chr 2 pos 5434, 1 != 0 ERROR at chr 2 pos 5569, 1 != 0 ERROR at chr 2 pos 5583, 1 != 0 ERROR at chr 2 pos 5588, 1 != 0 ERROR at chr 2 pos 5685, 1 != 0 ERROR at chr 2 pos 5698, 1 != 0 ERROR at chr 2 pos 5713, 1 != 0 ERROR at chr 2 pos 5853, 1 != 0 ERROR at chr 2 pos 5874, 1 != 0 ERROR at chr 2 pos 5982, 1 != 0 ERROR at chr 2 pos 6019, 1 != 0 ERROR at chr 2 pos 6062, 1 != 0 ERROR at chr 2 pos 6067, 1 != 0 ERROR at chr 2 pos 6134, 1 != 0 ERROR at chr 2 pos 6145, 1 != 0 ERROR at chr 2 pos 6243, 1 != 0 ERROR at chr 2 pos 6257, 1 != 0 ERROR at chr 2 pos 6307, 1 != 0 ERROR at chr 2 pos 6503, 1 != 0 ERROR at chr 2 pos 6520, 1 != 0 ERROR at chr 2 pos 6563, 1 != 0 ERROR at chr 2 pos 6645, 1 != 0 ERROR at chr 2 pos 6717, 1 != 0 ERROR at chr 2 pos 6832, 1 != 0 ERROR at chr 2 pos 6833, 1 != 0 ERROR at chr 2 pos 6889, 1 != 0 ERROR at chr 2 pos 6918, 1 != 0 ERROR at chr 2 pos 6966, 1 != 0 ERROR at chr 2 pos 7054, 1 != 0 ERROR at chr 2 pos 7102, 1 != 0 ERROR at chr 2 pos 7139, 1 != 0 ERROR at chr 2 pos 7171, 1 != 0 ERROR at chr 2 pos 7398, 1 != 0 ERROR at chr 2 pos 7441, 1 != 0 ERROR at chr 2 pos 7502, 1 != 0 ERROR at chr 2 pos 7520, 1 != 0 ERROR at chr 2 pos 7557, 1 != 0 ERROR at chr 2 pos 7594, 1 != 0 ERROR at chr 2 pos 7617, 1 != 0 ERROR at chr 2 pos 7627, 1 != 0 ERROR at chr 2 pos 7637, 1 != 0 ERROR at chr 2 pos 7653, 1 != 0 ERROR at chr 2 pos 7687, 1 != 0 ERROR at chr 2 pos 7738, 1 != 0 ERROR at chr 2 pos 7739, 1 != 0 ERROR at chr 2 pos 7799, 1 != 0 ERROR at chr 2 pos 7811, 1 != 0 ERROR at chr 2 pos 7844, 1 != 0 ERROR at chr 2 pos 7850, 1 != 0 ERROR at chr 2 pos 7920, 1 != 0 ERROR at chr 2 pos 8021, 1 != 0 ERROR at chr 2 pos 8048, 1 != 0 ERROR at chr 2 pos 8052, 1 != 0 ERROR at chr 2 pos 8077, 1 != 0 ERROR at chr 2 pos 8225, 1 != 0 ERROR at chr 2 pos 8386, 1 != 0 ERROR at chr 2 pos 8442, 1 != 0 ERROR at chr 2 pos 8487, 1 != 0 ERROR at chr 2 pos 8568, 1 != 0 ERROR at chr 2 pos 8886, 1 != 0 ERROR at chr 2 pos 8975, 1 != 0 ERROR at chr 3 pos 47, 1 != 0 ERROR at chr 3 pos 128, 1 != 0 ERROR at chr 3 pos 276, 1 != 0 ERROR at chr 3 pos 426, 1 != 0 ERROR at chr 3 pos 533, 1 != 0 ERROR at chr 3 pos 564, 1 != 0 ERROR at chr 3 pos 565, 1 != 0 ERROR at chr 3 pos 663, 1 != 0 ERROR at chr 3 pos 733, 1 != 0 ERROR at chr 3 pos 1228, 1 != 0 ERROR at chr 3 pos 1243, 1 != 0 ERROR at chr 3 pos 1552, 1 != 0 ERROR at chr 3 pos 1597, 1 != 0 ERROR at chr 3 pos 1718, 1 != 0 ERROR at chr 3 pos 1871, 1 != 0 ERROR at chr 3 pos 1872, 1 != 0 ERROR at chr 3 pos 1928, 1 != 0 ERROR at chr 3 pos 2039, 1 != 0 ERROR at chr 3 pos 2050, 1 != 0 ERROR at chr 3 pos 2105, 1 != 0 ERROR at chr 3 pos 2119, 1 != 0 ERROR at chr 3 pos 2162, 1 != 0 ERROR at chr 3 pos 2193, 1 != 0 ERROR at chr 3 pos 2262, 1 != 0 ERROR at chr 3 pos 2478, 1 != 0 ERROR at chr 3 pos 2564, 1 != 0 ERROR at chr 3 pos 2604, 1 != 0 ERROR at chr 3 pos 2605, 1 != 0 ERROR at chr 3 pos 2739, 1 != 0 ERROR at chr 3 pos 2784, 1 != 0 ERROR at chr 3 pos 2850, 1 != 0 ERROR at chr 3 pos 2856, 1 != 0 ERROR at chr 3 pos 2895, 1 != 0 ERROR at chr 3 pos 2909, 1 != 0 ERROR at chr 3 pos 2913, 1 != 0 ERROR at chr 3 pos 3032, 1 != 0 ERROR at chr 3 pos 3083, 1 != 0 ERROR at chr 3 pos 3159, 1 != 0 ERROR at chr 3 pos 3486, 1 != 0 ERROR at chr 3 pos 3529, 1 != 0 ERROR at chr 3 pos 3576, 1 != 0 ERROR at chr 3 pos 3695, 1 != 0 ERROR at chr 3 pos 3798, 1 != 0 ERROR at chr 3 pos 3845, 1 != 0 ERROR at chr 3 pos 3870, 1 != 0 ERROR at chr 3 pos 3930, 1 != 0 ERROR at chr 3 pos 4060, 1 != 0 ERROR at chr 3 pos 4212, 1 != 0 ERROR at chr 3 pos 4218, 1 != 0 ERROR at chr 3 pos 4252, 1 != 0 ERROR at chr 3 pos 4258, 1 != 0 ERROR at chr 3 pos 4280, 1 != 0 ERROR at chr 3 pos 4335, 1 != 0 ERROR at chr 3 pos 4396, 1 != 0 ERROR at chr 3 pos 4450, 1 != 0 ERROR at chr 3 pos 4609, 1 != 0 ERROR at chr 3 pos 4648, 1 != 0 ERROR at chr 3 pos 4649, 1 != 0 ERROR at chr 3 pos 4655, 1 != 0 ERROR at chr 3 pos 4693, 1 != 0 ERROR at chr 3 pos 4730, 1 != 0 ERROR at chr 3 pos 4841, 1 != 0 ERROR at chr 3 pos 4864, 1 != 0 ERROR at chr 3 pos 4957, 1 != 0 ERROR at chr 3 pos 5096, 1 != 0 ERROR at chr 3 pos 5107, 1 != 0 ERROR at chr 3 pos 5228, 1 != 0 ERROR at chr 3 pos 5317, 1 != 0 ERROR at chr 3 pos 5386, 1 != 0 ERROR at chr 3 pos 5391, 1 != 0 ERROR at chr 3 pos 5408, 1 != 0 ERROR at chr 3 pos 5413, 1 != 0 ERROR at chr 3 pos 5577, 1 != 0 ERROR at chr 3 pos 5675, 1 != 0 ERROR at chr 3 pos 5694, 1 != 0 ERROR at chr 3 pos 5707, 1 != 0 ERROR at chr 3 pos 5722, 1 != 0 ERROR at chr 3 pos 5857, 1 != 0 ERROR at chr 3 pos 5879, 1 != 0 ERROR at chr 3 pos 5894, 1 != 0 ERROR at chr 3 pos 5939, 1 != 0 ERROR at chr 3 pos 6033, 1 != 0 ERROR at chr 3 pos 6066, 1 != 0 ERROR at chr 3 pos 6071, 1 != 0 ERROR at chr 3 pos 6140, 1 != 0 ERROR at chr 3 pos 6151, 1 != 0 ERROR at chr 3 pos 6202, 1 != 0 ERROR at chr 3 pos 6259, 1 != 0 ERROR at chr 3 pos 6308, 1 != 0 ERROR at chr 3 pos 6535, 1 != 0 ERROR at chr 3 pos 6559, 1 != 0 ERROR at chr 3 pos 6623, 1 != 0 ERROR at chr 3 pos 6845, 1 != 0 ERROR at chr 3 pos 6879, 1 != 0 ERROR at chr 3 pos 6909, 1 != 0 ERROR at chr 3 pos 6957, 1 != 0 ERROR at chr 3 pos 7131, 1 != 0 ERROR at chr 3 pos 7176, 1 != 0 ERROR at chr 3 pos 7317, 1 != 0 ERROR at chr 3 pos 7377, 1 != 0 ERROR at chr 3 pos 7387, 1 != 0 ERROR at chr 3 pos 7432, 1 != 0 ERROR at chr 3 pos 7646, 1 != 0 ERROR at chr 3 pos 7714, 1 != 0 ERROR at chr 3 pos 7826, 1 != 0 ERROR at chr 3 pos 7832, 1 != 0 ERROR at chr 3 pos 7839, 1 != 0 ERROR at chr 3 pos 7911, 1 != 0 ERROR at chr 3 pos 8013, 1 != 0 ERROR at chr 3 pos 8041, 1 != 0 ERROR at chr 3 pos 8070, 1 != 0 ERROR at chr 3 pos 8118, 1 != 0 ERROR at chr 3 pos 8182, 1 != 0 ERROR at chr 3 pos 8213, 1 != 0 ERROR at chr 3 pos 8225, 1 != 0 ERROR at chr 3 pos 8233, 1 != 0 ERROR at chr 3 pos 8244, 1 != 0 ERROR at chr 3 pos 8383, 1 != 0 ERROR at chr 3 pos 8438, 1 != 0 ERROR at chr 3 pos 8483, 1 != 0 ERROR at chr 3 pos 8565, 1 != 0 ERROR at chr 3 pos 8878, 1 != 0 ERROR at chr 4 pos 47, 1 != 0 ERROR at chr 4 pos 102, 1 != 0 ERROR at chr 4 pos 197, 1 != 0 ERROR at chr 4 pos 220, 1 != 0 ERROR at chr 4 pos 294, 1 != 0 ERROR at chr 4 pos 424, 1 != 0 ERROR at chr 4 pos 576, 1 != 0 ERROR at chr 4 pos 667, 1 != 0 ERROR at chr 4 pos 1007, 1 != 0 ERROR at chr 4 pos 1008, 1 != 0 ERROR at chr 4 pos 1230, 1 != 0 ERROR at chr 4 pos 1326, 1 != 0 ERROR at chr 4 pos 1466, 1 != 0 ERROR at chr 4 pos 1555, 1 != 0 ERROR at chr 4 pos 1604, 1 != 0 ERROR at chr 4 pos 1645, 1 != 0 ERROR at chr 4 pos 1826, 1 != 0 ERROR at chr 4 pos 1840, 1 != 0 ERROR at chr 4 pos 2019, 1 != 0 ERROR at chr 4 pos 2044, 1 != 0 ERROR at chr 4 pos 2203, 1 != 0 ERROR at chr 4 pos 2258, 1 != 0 ERROR at chr 4 pos 2266, 1 != 0 ERROR at chr 4 pos 2475, 1 != 0 ERROR at chr 4 pos 2493, 1 != 0 ERROR at chr 4 pos 2499, 1 != 0 ERROR at chr 4 pos 2560, 1 != 0 ERROR at chr 4 pos 2598, 1 != 0 ERROR at chr 4 pos 2599, 1 != 0 ERROR at chr 4 pos 2734, 1 != 0 ERROR at chr 4 pos 2846, 1 != 0 ERROR at chr 4 pos 2852, 1 != 0 ERROR at chr 4 pos 2877, 1 != 0 ERROR at chr 4 pos 2893, 1 != 0 ERROR at chr 4 pos 2980, 1 != 0 ERROR at chr 4 pos 3027, 1 != 0 ERROR at chr 4 pos 3032, 1 != 0 ERROR at chr 4 pos 3038, 1 != 0 ERROR at chr 4 pos 3073, 1 != 0 ERROR at chr 4 pos 3077, 1 != 0 ERROR at chr 4 pos 3131, 1 != 0 ERROR at chr 4 pos 3151, 1 != 0 ERROR at chr 4 pos 3261, 1 != 0 ERROR at chr 4 pos 3302, 1 != 0 ERROR at chr 4 pos 3563, 1 != 0 ERROR at chr 4 pos 3678, 1 != 0 ERROR at chr 4 pos 3733, 1 != 0 ERROR at chr 4 pos 3790, 1 != 0 ERROR at chr 4 pos 3838, 1 != 0 ERROR at chr 4 pos 3877, 1 != 0 ERROR at chr 4 pos 3927, 1 != 0 ERROR at chr 4 pos 4158, 1 != 0 ERROR at chr 4 pos 4183, 1 != 0 ERROR at chr 4 pos 4233, 1 != 0 ERROR at chr 4 pos 4286, 1 != 0 ERROR at chr 4 pos 4313, 1 != 0 ERROR at chr 4 pos 4372, 1 != 0 ERROR at chr 4 pos 4413, 1 != 0 ERROR at chr 4 pos 4460, 1 != 0 ERROR at chr 4 pos 4502, 1 != 0 ERROR at chr 4 pos 4634, 1 != 0 ERROR at chr 4 pos 4635, 1 != 0 ERROR at chr 4 pos 4641, 1 != 0 ERROR at chr 4 pos 4734, 1 != 0 ERROR at chr 4 pos 4834, 1 != 0 ERROR at chr 4 pos 4846, 1 != 0 ERROR at chr 4 pos 5043, 1 != 0 ERROR at chr 4 pos 5082, 1 != 0 ERROR at chr 4 pos 5094, 1 != 0 ERROR at chr 4 pos 5210, 1 != 0 ERROR at chr 4 pos 5296, 1 != 0 ERROR at chr 4 pos 5306, 1 != 0 ERROR at chr 4 pos 5386, 1 != 0 ERROR at chr 4 pos 5488, 1 != 0 ERROR at chr 4 pos 5542, 1 != 0 ERROR at chr 4 pos 5553, 1 != 0 ERROR at chr 4 pos 5592, 1 != 0 ERROR at chr 4 pos 5651, 1 != 0 ERROR at chr 4 pos 5671, 1 != 0 ERROR at chr 4 pos 5685, 1 != 0 ERROR at chr 4 pos 5700, 1 != 0 ERROR at chr 4 pos 5744, 1 != 0 ERROR at chr 4 pos 5836, 1 != 0 ERROR at chr 4 pos 5857, 1 != 0 ERROR at chr 4 pos 5865, 1 != 0 ERROR at chr 4 pos 5872, 1 != 0 ERROR at chr 4 pos 5979, 1 != 0 ERROR at chr 4 pos 5983, 1 != 0 ERROR at chr 4 pos 6050, 1 != 0 ERROR at chr 4 pos 6085, 1 != 0 ERROR at chr 4 pos 6116, 1 != 0 ERROR at chr 4 pos 6238, 1 != 0 ERROR at chr 4 pos 6288, 1 != 0 ERROR at chr 4 pos 6333, 1 != 0 ERROR at chr 4 pos 6400, 1 != 0 ERROR at chr 4 pos 6485, 1 != 0 ERROR at chr 4 pos 6519, 1 != 0 ERROR at chr 4 pos 6542, 1 != 0 ERROR at chr 4 pos 6573, 1 != 0 ERROR at chr 4 pos 6609, 1 != 0 ERROR at chr 4 pos 6668, 1 != 0 ERROR at chr 4 pos 6695, 1 != 0 ERROR at chr 4 pos 6730, 1 != 0 ERROR at chr 4 pos 6778, 1 != 0 ERROR at chr 4 pos 6837, 1 != 0 ERROR at chr 4 pos 6844, 1 != 0 ERROR at chr 4 pos 6870, 1 != 0 ERROR at chr 4 pos 6902, 1 != 0 ERROR at chr 4 pos 6951, 1 != 0 ERROR at chr 4 pos 7036, 1 != 0 ERROR at chr 4 pos 7051, 1 != 0 ERROR at chr 4 pos 7120, 1 != 0 ERROR at chr 4 pos 7124, 1 != 0 ERROR at chr 4 pos 7249, 1 != 0 ERROR at chr 4 pos 7289, 1 != 0 ERROR at chr 4 pos 7297, 1 != 0 ERROR at chr 4 pos 7366, 1 != 0 ERROR at chr 4 pos 7376, 1 != 0 ERROR at chr 4 pos 7416, 1 != 0 ERROR at chr 4 pos 7449, 1 != 0 ERROR at chr 4 pos 7601, 1 != 0 ERROR at chr 4 pos 7635, 1 != 0 ERROR at chr 4 pos 7647, 1 != 0 ERROR at chr 4 pos 7705, 1 != 0 ERROR at chr 4 pos 7712, 1 != 0 ERROR at chr 4 pos 7727, 1 != 0 ERROR at chr 4 pos 7824, 1 != 0 ERROR at chr 4 pos 7830, 1 != 0 ERROR at chr 4 pos 7896, 1 != 0 ERROR at chr 4 pos 7911, 1 != 0 ERROR at chr 4 pos 8016, 1 != 0 ERROR at chr 4 pos 8074, 1 != 0 ERROR at chr 4 pos 8124, 1 != 0 ERROR at chr 4 pos 8196, 1 != 0 ERROR at chr 4 pos 8214, 1 != 0 ERROR at chr 4 pos 8384, 1 != 0 ERROR at chr 4 pos 8411, 1 != 0 ERROR at chr 4 pos 8567, 1 != 0 ERROR at chr 4 pos 8882, 1 != 0 ERROR at chr 5 pos 15, 1 != 0 ERROR at chr 5 pos 195, 1 != 0 ERROR at chr 5 pos 282, 1 != 0 ERROR at chr 5 pos 431, 1 != 0 ERROR at chr 5 pos 540, 1 != 0 ERROR at chr 5 pos 577, 1 != 0 ERROR at chr 5 pos 685, 1 != 0 ERROR at chr 5 pos 772, 1 != 0 ERROR at chr 5 pos 797, 1 != 0 ERROR at chr 5 pos 882, 1 != 0 ERROR at chr 5 pos 914, 1 != 0 ERROR at chr 5 pos 916, 1 != 0 ERROR at chr 5 pos 1371, 1 != 0 ERROR at chr 5 pos 1552, 1 != 0 ERROR at chr 5 pos 1605, 1 != 0 ERROR at chr 5 pos 1664, 1 != 0 ERROR at chr 5 pos 1826, 1 != 0 ERROR at chr 5 pos 1840, 1 != 0 ERROR at chr 5 pos 1922, 1 != 0 ERROR at chr 5 pos 2042, 1 != 0 ERROR at chr 5 pos 2149, 1 != 0 ERROR at chr 5 pos 2187, 1 != 0 ERROR at chr 5 pos 2218, 1 != 0 ERROR at chr 5 pos 2475, 1 != 0 ERROR at chr 5 pos 2562, 1 != 0 ERROR at chr 5 pos 2600, 1 != 0 ERROR at chr 5 pos 2601, 1 != 0 ERROR at chr 5 pos 2657, 1 != 0 ERROR at chr 5 pos 2783, 1 != 0 ERROR at chr 5 pos 2848, 1 != 0 ERROR at chr 5 pos 2854, 1 != 0 ERROR at chr 5 pos 2879, 1 != 0 ERROR at chr 5 pos 3166, 1 != 0 ERROR at chr 5 pos 3439, 1 != 0 ERROR at chr 5 pos 3520, 1 != 0 ERROR at chr 5 pos 3564, 1 != 0 ERROR at chr 5 pos 3677, 1 != 0 ERROR at chr 5 pos 3686, 1 != 0 ERROR at chr 5 pos 3835, 1 != 0 ERROR at chr 5 pos 3926, 1 != 0 ERROR at chr 5 pos 4101, 1 != 0 ERROR at chr 5 pos 4186, 1 != 0 ERROR at chr 5 pos 4201, 1 != 0 ERROR at chr 5 pos 4207, 1 != 0 ERROR at chr 5 pos 4215, 1 != 0 ERROR at chr 5 pos 4239, 1 != 0 ERROR at chr 5 pos 4324, 1 != 0 ERROR at chr 5 pos 4389, 1 != 0 ERROR at chr 5 pos 4448, 1 != 0 ERROR at chr 5 pos 4476, 1 != 0 ERROR at chr 5 pos 4603, 1 != 0 ERROR at chr 5 pos 4640, 1 != 0 ERROR at chr 5 pos 4641, 1 != 0 ERROR at chr 5 pos 4647, 1 != 0 ERROR at chr 5 pos 4682, 1 != 0 ERROR at chr 5 pos 4705, 1 != 0 ERROR at chr 5 pos 4736, 1 != 0 ERROR at chr 5 pos 4830, 1 != 0 ERROR at chr 5 pos 4872, 1 != 0 ERROR at chr 5 pos 4947, 1 != 0 ERROR at chr 5 pos 5087, 1 != 0 ERROR at chr 5 pos 5141, 1 != 0 ERROR at chr 5 pos 5219, 1 != 0 ERROR at chr 5 pos 5377, 1 != 0 ERROR at chr 5 pos 5382, 1 != 0 ERROR at chr 5 pos 5398, 1 != 0 ERROR at chr 5 pos 5569, 1 != 0 ERROR at chr 5 pos 5669, 1 != 0 ERROR at chr 5 pos 5690, 1 != 0 ERROR at chr 5 pos 5704, 1 != 0 ERROR at chr 5 pos 5719, 1 != 0 ERROR at chr 5 pos 5750, 1 != 0 ERROR at chr 5 pos 5765, 1 != 0 ERROR at chr 5 pos 5858, 1 != 0 ERROR at chr 5 pos 5895, 1 != 0 ERROR at chr 5 pos 5999, 1 != 0 ERROR at chr 5 pos 6069, 1 != 0 ERROR at chr 5 pos 6074, 1 != 0 ERROR at chr 5 pos 6153, 1 != 0 ERROR at chr 5 pos 6342, 1 != 0 ERROR at chr 5 pos 6365, 1 != 0 ERROR at chr 5 pos 6390, 1 != 0 ERROR at chr 5 pos 6499, 1 != 0 ERROR at chr 5 pos 6571, 1 != 0 ERROR at chr 5 pos 6588, 1 != 0 ERROR at chr 5 pos 6594, 1 != 0 ERROR at chr 5 pos 6595, 1 != 0 ERROR at chr 5 pos 6624, 1 != 0 ERROR at chr 5 pos 6710, 1 != 0 ERROR at chr 5 pos 6800, 1 != 0 ERROR at chr 5 pos 6847, 1 != 0 ERROR at chr 5 pos 6863, 1 != 0 ERROR at chr 5 pos 6912, 1 != 0 ERROR at chr 5 pos 6962, 1 != 0 ERROR at chr 5 pos 7049, 1 != 0 ERROR at chr 5 pos 7382, 1 != 0 ERROR at chr 5 pos 7392, 1 != 0 ERROR at chr 5 pos 7438, 1 != 0 ERROR at chr 5 pos 7615, 1 != 0 ERROR at chr 5 pos 7650, 1 != 0 ERROR at chr 5 pos 7717, 1 != 0 ERROR at chr 5 pos 7733, 1 != 0 ERROR at chr 5 pos 7795, 1 != 0 ERROR at chr 5 pos 7825, 1 != 0 ERROR at chr 5 pos 7831, 1 != 0 ERROR at chr 5 pos 7837, 1 != 0 ERROR at chr 5 pos 7848, 1 != 0 ERROR at chr 5 pos 7900, 1 != 0 ERROR at chr 5 pos 7915, 1 != 0 ERROR at chr 5 pos 8017, 1 != 0 ERROR at chr 5 pos 8045, 1 != 0 ERROR at chr 5 pos 8122, 1 != 0 ERROR at chr 5 pos 8138, 1 != 0 ERROR at chr 5 pos 8192, 1 != 0 ERROR at chr 5 pos 8223, 1 != 0 ERROR at chr 5 pos 8247, 1 != 0 ERROR at chr 5 pos 8320, 1 != 0 ERROR at chr 5 pos 8386, 1 != 0 ERROR at chr 5 pos 8572, 1 != 0 ERROR at chr 5 pos 8593, 1 != 0 ERROR at chr 5 pos 8708, 1 != 0 ERROR at chr 5 pos 8764, 1 != 0 ERROR at chr 5 pos 8846, 1 != 0 ERROR at chr 5 pos 8889, 1 != 0 ERROR at chr 5 pos 9016, 1 != 0 Test # 0 FAILED obj-*/graphconstructor/twopaco -f 20 -k 11 example/example.fa -o example/example.dbg Threads = 1 Vertex length = 11 Hash functions = 5 Filter size = 1048576 Capacity = 1 Files: example/example.fa -------------------------------------------------------------------------------- Round 0, 0:1048576 Pass Filling Filtering 1 0 0 2 0 0 True junctions count = 7 False junctions count = 0 Hash table size = 7 Candidate marks count = 16 -------------------------------------------------------------------------------- Reallocating bifurcations time: 0 True marks count: 16 Edges construction time: 0 -------------------------------------------------------------------------------- Distinct junctions = 7 TwoPaCo::buildGraphMain:: allocated with scalable_malloc; freeing. TwoPaCo::buildGraphMain:: Calling scalable_allocation_command(TBBMALLOC_CLEAN_ALL_BUFFERS, 0); obj-*/graphdump/graphdump -f dot example/example.dbg -k 11 > example/example.dot make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedir=src dh_prep -O--sourcedir=src dh_auto_install --destdir=debian/twopaco/ -O--sourcedir=src cd obj-i686-linux-gnu && make -j8 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELEASE" -- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/graphdump -- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/twopaco make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' dh_installdocs -O--sourcedir=src dh_installchangelogs -O--sourcedir=src debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_installexamples --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_installman --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_installsystemduser -O--sourcedir=src dh_perl -O--sourcedir=src dh_link -O--sourcedir=src dh_strip_nondeterminism -O--sourcedir=src dh_compress -O--sourcedir=src dh_fixperms -O--sourcedir=src debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_missing --list-missing dh_missing: warning: CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: common/dnachar.cpp exists in src but is not installed to anywhere dh_missing: warning: common/dnachar.h exists in src but is not installed to anywhere dh_missing: warning: common/junctionapi.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/Makefile exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/README.md exists in src but is not installed to anywhere (related file: "/build/reproducible-path/twopaco-1.0.0+dfsg/example/README.md") dh_missing: warning: common/ngramhashing/characterhash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/cyclichash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example2.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example3.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example4.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example64bits.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/generalhash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/mersennetwister.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/rabinkarphash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/speedtesting.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/threewisehash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/unit.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/ztimer.h exists in src but is not installed to anywhere dh_missing: warning: common/spooky/SpookyV2.cpp exists in src but is not installed to anywhere dh_missing: warning: common/spooky/SpookyV2.h exists in src but is not installed to anywhere dh_missing: warning: common/streamfastaparser.cpp exists in src but is not installed to anywhere dh_missing: warning: common/streamfastaparser.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/assemblyedgeconstructor.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/assemblyedgeconstructor.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/bifurcationstorage.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/candidateoccurence.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/common.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/common.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/compressedstring.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/compressedstring.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/concurrentbitvector.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/concurrentbitvector.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/constructor.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/test.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/test.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/vertexenumerator.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/vertexenumerator.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/vertexrollinghash.h exists in src but is not installed to anywhere dh_missing: warning: graphdump/CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: graphdump/glueGfa1.py exists in src but is not installed to anywhere dh_missing: warning: graphdump/glueGfa2.py exists in src but is not installed to anywhere dh_missing: warning: graphdump/graphdump.cpp exists in src but is not installed to anywhere dh_missing: warning: naiveconstructor/naiveconstructor.cpp exists in src but is not installed to anywhere While detecting missing files, dh_missing noted some files with a similar name to those that were missing. This warning /might/ be resolved by replacing references to the missing files with the similarly named ones that dh_missing found - assuming the content is identical. As an example, you might want to replace: * /build/reproducible-path/twopaco-1.0.0+dfsg/example/README.md with: * common/ngramhashing/README.md in a file in debian/ or as argument to one of the dh_* tools called from debian/rules. (Note it is possible the paths are not used verbatim but instead directories containing or globs matching them are used instead) Alternatively, add the missing file to debian/not-installed if it cannot and should not be used. The following debhelper tools have reported what they installed (with files per package) * dh_installdocs: twopaco (0) * dh_installexamples: twopaco (10) * dh_installman: twopaco (2) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_dwz -a -O--sourcedir=src dh_strip -a -O--sourcedir=src dh_makeshlibs -a -O--sourcedir=src dh_shlibdeps -a -O--sourcedir=src dh_installdeb -O--sourcedir=src dh_gencontrol -O--sourcedir=src dh_md5sums -O--sourcedir=src dh_builddeb -O--sourcedir=src dpkg-deb: building package 'twopaco-dbgsym' in '../twopaco-dbgsym_1.0.0+dfsg-1_i386.deb'. dpkg-deb: building package 'twopaco' in '../twopaco_1.0.0+dfsg-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../twopaco_1.0.0+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../twopaco_1.0.0+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/13609 and its subdirectories I: Current time: Tue Jan 16 14:44:08 -12 2024 I: pbuilder-time-stamp: 1705459448 Wed Jan 17 02:44:09 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Wed Jan 17 02:44:09 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Wed Jan 17 02:47:33 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Wed Jan 17 02:47:33 UTC 2024 I: twopaco_1.0.0+dfsg-1_i386.changes: Format: 1.8 Date: Thu, 29 Sep 2022 01:51:49 -0400 Source: twopaco Binary: twopaco twopaco-dbgsym Architecture: i386 Version: 1.0.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andrius Merkys Description: twopaco - build the compacted de Bruijn graph from many complete genomes Closes: 1013182 Changes: twopaco (1.0.0+dfsg-1) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * Standards-Version: 4.6.1 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. . [ Andrius Merkys ] * New upstream version 1.0.0+dfsg (Closes: #1013182) * Drop upstream-integrated patches. * Update manpages. Checksums-Sha1: 25b2e122574ceda88517061d3602e09ddc4e074b 5914100 twopaco-dbgsym_1.0.0+dfsg-1_i386.deb 036edcb2aba764204217848d4736f0dad097978b 6096 twopaco_1.0.0+dfsg-1_i386.buildinfo 61b84714bbce606f857364568acb69b67b7a7be6 422572 twopaco_1.0.0+dfsg-1_i386.deb Checksums-Sha256: 520b17720f5bdfd150bb49cf5f6c830ae3869418e9ecc3dee52c9700923803d5 5914100 twopaco-dbgsym_1.0.0+dfsg-1_i386.deb 77ca18e3fefbd56439a8bc05b2b99d4c4efc21894c41fb3a2ea84724d6872aa8 6096 twopaco_1.0.0+dfsg-1_i386.buildinfo d13dfaa8f6001891409bd37816c82a19ba71902f3473b62407bfa658451fd255 422572 twopaco_1.0.0+dfsg-1_i386.deb Files: 2dc33c7eb5bad73d395bf99045c96ec8 5914100 debug optional twopaco-dbgsym_1.0.0+dfsg-1_i386.deb 8c517c4162e269f1476b6b0bfc6dc631 6096 science optional twopaco_1.0.0+dfsg-1_i386.buildinfo 213d9327f8730f03f506d4194fd558be 422572 science optional twopaco_1.0.0+dfsg-1_i386.deb Wed Jan 17 02:47:34 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.iRbgkh38/twopaco_1.0.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.iRbgkh38/twopaco_1.0.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.iRbgkh38/twopaco_1.0.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.iRbgkh38/b1/twopaco_1.0.0+dfsg-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.iRbgkh38/b2/twopaco_1.0.0+dfsg-1_i386.changes ## close_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 0.161s) 0.101s 6 calls xz 0.033s 7 calls diff 0.013s 2 calls cmp 0.013s 2 calls cmp (external) 0.001s 10 calls xxd 0.001s 11 calls cmp (internal) ## compare_files (cumulative) (total time: 0.997s) 0.309s 1 call abc.DotChangesFile 0.274s 1 call abc.DebFile 0.247s 2 calls abc.XzFile 0.108s 1 call abc.DebDataTarFile 0.027s 1 call abc.TarFile 0.019s 1 call abc.TextFile 0.008s 1 call diffoscope.comparators.utils.libarchive.LibarchiveMember 0.005s 1 call abc.Md5sumsFile ## container_extract (total time: 0.127s) 0.101s 6 calls diffoscope.comparators.xz.XzContainer 0.018s 32 calls diffoscope.comparators.deb.DebTarContainer 0.005s 8 calls diffoscope.comparators.deb.DebContainer 0.003s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.033s) 0.033s 29 calls linediff ## has_same_content_as (total time: 0.015s) 0.010s 2 calls abc.DebFile 0.004s 1 call abc.DebDataTarFile 0.001s 3 calls abc.TextFile 0.000s 2 calls abc.Md5sumsFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.TarFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveMember ## main (total time: 0.896s) 0.896s 2 calls outputs 0.000s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer ## output (total time: 0.175s) 0.174s 1 call html 0.001s 1 call text 0.000s 1 call json ## recognizes (total time: 0.156s) 0.083s 12 calls diffoscope.comparators.binary.FilesystemFile 0.044s 900 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.015s 108 calls diffoscope.comparators.debian.DebControlMember 0.013s 256 calls diffoscope.comparators.utils.archive.ArchiveMember 0.000s 10 calls abc.DotChangesFile 0.000s 16 calls abc.Md5sumsFile ## specialize (total time: 0.068s) 0.068s 13 calls specialize Wed Jan 17 02:47:35 UTC 2024 E: twopaco failed to build reproducibly in bookworm on i386. Wed Jan 17 02:47:35 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bookworm/i386/twopaco_1.0.0+dfsg-1.diffoscope.html Wed Jan 17 02:47:37 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Jan 17 02:47:37 UTC 2024 I: Submitting 8.0K b1/twopaco_1.0.0+dfsg-1_i386.buildinfo.asc Wed Jan 17 02:47:38 UTC 2024 I: Submitting 8.0K b2/twopaco_1.0.0+dfsg-1_i386.buildinfo.asc Wed Jan 17 02:47:39 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jan 17 02:47:39 UTC 2024 I: Done submitting .buildinfo files. Wed Jan 17 02:47:39 UTC 2024 I: Removing signed twopaco_1.0.0+dfsg-1_i386.buildinfo.asc files: removed './b1/twopaco_1.0.0+dfsg-1_i386.buildinfo.asc' removed './b2/twopaco_1.0.0+dfsg-1_i386.buildinfo.asc'