Tue Apr 18 13:27:07 UTC 2023 I: starting to build theseus/bookworm/i386 on jenkins on '2023-04-18 13:27' Tue Apr 18 13:27:07 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/10386/console.log Tue Apr 18 13:27:07 UTC 2023 I: Downloading source for bookworm/theseus=3.3.0-14 --2023-04-18 13:27:08-- http://cdn-fastly.deb.debian.org/debian/pool/main/t/theseus/theseus_3.3.0-14.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2085 (2.0K) [text/prs.lines.tag] Saving to: ‘theseus_3.3.0-14.dsc’ 0K .. 100% 153M=0s 2023-04-18 13:27:08 (153 MB/s) - ‘theseus_3.3.0-14.dsc’ saved [2085/2085] Tue Apr 18 13:27:08 UTC 2023 I: theseus_3.3.0-14.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: theseus Binary: theseus, theseus-examples Architecture: amd64 i386 all Version: 3.3.0-14 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Pierre Gruet Homepage: http://www.theseus3d.org Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/theseus Vcs-Git: https://salsa.debian.org/med-team/theseus.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), libgsl-dev Package-List: theseus deb science optional arch=amd64,i386 theseus-examples deb science optional arch=all Checksums-Sha1: b078079cfa0022b6755a4252b20a80312d4f8964 22548124 theseus_3.3.0.orig.tar.gz e01725bb93c68c5ab5d15d0b4c47dc57c2fa7009 16548 theseus_3.3.0-14.debian.tar.xz Checksums-Sha256: 3cfd4f906717f9cb8e77f689fc97059b32df355c0696077034ea99a485e3f2fe 22548124 theseus_3.3.0.orig.tar.gz 9933c3b28db456144e0d18b1d57f61f0b8024ba9d98e147866f4ea893311c2c2 16548 theseus_3.3.0-14.debian.tar.xz Files: 394c8676760cc3a8adc42d9623d94dfc 22548124 theseus_3.3.0.orig.tar.gz 4a41839e92ed70ec952fe1e22e5415fb 16548 theseus_3.3.0-14.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmN3wLoACgkQYAMWptwn dHbp2w//XvJ36zO+vZIV9HleGhTMYCLnsDWeKLqvPyo54bM8aaqjCFr445o5pe1f EHF20SUgCMoOJZ++0SOWH1C0rEAWEGMr2JKsPEDKEemh13LiXioqzefvji4Y9RJ9 mqXkGCJikMhj09VIlKkHmc+mrWjUagaSAXvaqy0UdOWgQYs235g4fyuX4MsnVELO qza3ybF23/n1gMgh++7PtkIa823NHipI6DPCXiNJiKtluvi5lgO6hnbZKGTGNSUj EWBrjeni/GW8Aofhw7PEzniEir1TX8nxn03J4+Voshbx9fTL7mPxXBVoWtiFwLfO OdtV3rILQLV3IcwzhNHW92lkCvX8k+NLiL/63pSXCmJHXEcAo7ocdNMBEqe8d4hY 1skO0zcYMoXdWePJ6CVnWar4VTdiAZlAo4pmiGR84xfFn2L/omxmg++xsyy3yOBU JAl1QthCGC78xw2DZyxUe7m8pX5kel3eN19xkym6NrZbyGjBluZLrYnQpjrbKFk7 ZXcnqne1F3NICCcQA6HE2JyPeW4shdX4K1ATfYjzJNPWAsELd2/DCHi1JF5R8e8+ hQPr8k6OEY65q0VXOERLc2DSOADSCVVpvvtkU07GQBZ5UtWhJFVfaOXgldgVnTuR 6PuMl3K//uFT98gkN2tDtfuyLkXdm0rOX4zNwjGKdhndLuqFlgo= =Zn5O -----END PGP SIGNATURE----- Tue Apr 18 13:27:08 UTC 2023 I: Checking whether the package is not for us Tue Apr 18 13:27:08 UTC 2023 I: Starting 1st build on remote node ionos16-i386.debian.net. Tue Apr 18 13:27:08 UTC 2023 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Tue Apr 18 13:28:36 UTC 2023 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 20 07:50:09 -12 2024 I: pbuilder-time-stamp: 1716234609 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [theseus_3.3.0-14.dsc] I: copying [./theseus_3.3.0.orig.tar.gz] I: copying [./theseus_3.3.0-14.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 18 05:28:26 2022 -12 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./theseus_3.3.0-14.dsc: no acceptable signature found dpkg-source: info: extracting theseus in theseus-3.3.0 dpkg-source: info: unpacking theseus_3.3.0.orig.tar.gz dpkg-source: info: unpacking theseus_3.3.0-14.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 30_fix_gcc_options.patch dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying 0003-fix-issues-uncovered-by-gcc8.patch dpkg-source: info: applying 0004-create-lib-dir.patch dpkg-source: info: applying 0005_stringbuffer.patch dpkg-source: info: applying adapt_to_muscle5.patch dpkg-source: info: applying remove_linefix.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5654/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='7a8bf6fa05014fb1806772c7f77c4a3e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5654' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HUv7qO3Y/pbuilderrc_54dT --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HUv7qO3Y/b1 --logfile b1/build.log theseus_3.3.0-14.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/5654/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libgsl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 21.2 MB of archives. After unpacking 82.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libgslcblas0 i386 2.7.1+dfsg-3+b1 [107 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libgsl27 i386 2.7.1+dfsg-3+b1 [929 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libgsl-dev i386 2.7.1+dfsg-3+b1 [1176 kB] Fetched 21.2 MB in 0s (62.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/theseus-3.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../theseus_3.3.0-14_source.changes dpkg-buildpackage: info: source package theseus dpkg-buildpackage: info: source version 3.3.0-14 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/theseus-3.3.0' find . -name '*.[oa]' -exec rm -f {} \; rm -f theseus distfit make[1]: Leaving directory '/build/theseus-3.3.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/theseus-3.3.0' dh_auto_build --no-parallel make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/theseus-3.3.0' mkdir -p lib ( cd libdistfit; make && cp libdistfit.a ../lib ) make[3]: Entering directory '/build/theseus-3.3.0/libdistfit' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c statistics.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c beta_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c betaprime_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c betasym_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c binomial_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c cauchy_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c chi_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c chisqr_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c chisqrgen_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c EVD_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c exp_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c gamma_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c invchisqr_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c invgamma_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c invgauss_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c laplace_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c logistic_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c lognormal_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c maxwell_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c negbinom_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c normal_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pareto_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c rayleigh_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c recinvgauss_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c rice_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c uniform_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c vonmises_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c weibull_dist.c ar -rvs libdistfit.a statistics.o beta_dist.o betaprime_dist.o betasym_dist.o binomial_dist.o cauchy_dist.o chi_dist.o chisqr_dist.o chisqrgen_dist.o EVD_dist.o exp_dist.o gamma_dist.o invchisqr_dist.o invgamma_dist.o invgauss_dist.o laplace_dist.o logistic_dist.o lognormal_dist.o maxwell_dist.o negbinom_dist.o normal_dist.o pareto_dist.o rayleigh_dist.o recinvgauss_dist.o rice_dist.o uniform_dist.o vonmises_dist.o weibull_dist.o ar: creating libdistfit.a a - statistics.o a - beta_dist.o a - betaprime_dist.o a - betasym_dist.o a - binomial_dist.o a - cauchy_dist.o a - chi_dist.o a - chisqr_dist.o a - chisqrgen_dist.o a - EVD_dist.o a - exp_dist.o a - gamma_dist.o a - invchisqr_dist.o a - invgamma_dist.o a - invgauss_dist.o a - laplace_dist.o a - logistic_dist.o a - lognormal_dist.o a - maxwell_dist.o a - negbinom_dist.o a - normal_dist.o a - pareto_dist.o a - rayleigh_dist.o a - recinvgauss_dist.o a - rice_dist.o a - uniform_dist.o a - vonmises_dist.o a - weibull_dist.o ranlib libdistfit.a make[3]: Leaving directory '/build/theseus-3.3.0/libdistfit' ( cd libDLTutils; make && cp libDLTutils.a ../lib ) make[3]: Entering directory '/build/theseus-3.3.0/libDLTutils' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c DLTutils.c ar -rvs libDLTutils.a DLTutils.o ar: creating libDLTutils.a a - DLTutils.o ranlib libDLTutils.a make[3]: Leaving directory '/build/theseus-3.3.0/libDLTutils' ( cd libmsa; make && cp libmsa.a ../lib ) make[3]: Entering directory '/build/theseus-3.3.0/libmsa' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c msa.c ar -rvs libmsa.a msa.o ar: creating libmsa.a a - msa.o ranlib libmsa.a make[3]: Leaving directory '/build/theseus-3.3.0/libmsa' ( cd libdltmath; make && cp libdltmath.a ../lib ) make[3]: Entering directory '/build/theseus-3.3.0/libdltmath' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ludcmp.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MatUtils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Mat3Utils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Mat4Utils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c VecUtils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c quicksort.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c integrate.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c eigen_gsl.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultivarGamma.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c specfunc.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c RegGamma.c ar -rvs libdltmath.a ludcmp.o MatUtils.o Mat3Utils.o Mat4Utils.o VecUtils.o quicksort.o integrate.o eigen_gsl.o MultivarGamma.o specfunc.o RegGamma.o ar: creating libdltmath.a a - ludcmp.o a - MatUtils.o a - Mat3Utils.o a - Mat4Utils.o a - VecUtils.o a - quicksort.o a - integrate.o a - eigen_gsl.o a - MultivarGamma.o a - specfunc.o a - RegGamma.o ranlib libdltmath.a make[3]: Leaving directory '/build/theseus-3.3.0/libdltmath' ( cd libdssplite; make && cp libdssplite.a ../lib ) make[3]: Entering directory '/build/theseus-3.3.0/libdssplite' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c dssplite.c ar -rvs libdssplite.a dssplite.o ar: creating libdssplite.a a - dssplite.o ranlib libdssplite.a make[3]: Leaving directory '/build/theseus-3.3.0/libdssplite' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c CovMat.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c DistMat.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Embed.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Error.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c FragCds.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c FragDist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c HierarchVars.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c lodmats.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultiPose.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultiPose2MSA.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultiPosePth.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c PCAstats.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbIO.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbMalloc.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbStats.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbUtils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c QuarticHornFrag.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c RandCds.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbSSM.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ProcGSLSVD.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ProcGSLSVDNu.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ProcJacobiSVD.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c GibbsMet.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c qcprot.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c StructAlign.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c NWfill.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c termcol.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c theseuslib.c ar -rvs libtheseus.a CovMat.o DistMat.o Embed.o Error.o FragCds.o FragDist.o HierarchVars.o lodmats.o MultiPose.o MultiPose2MSA.o MultiPosePth.o PCAstats.o pdbIO.o pdbMalloc.o pdbStats.o pdbUtils.o QuarticHornFrag.o RandCds.o pdbSSM.o ProcGSLSVD.o ProcGSLSVDNu.o ProcJacobiSVD.o GibbsMet.o qcprot.o StructAlign.o NWfill.o termcol.o theseuslib.o ar: creating libtheseus.a a - CovMat.o a - DistMat.o a - Embed.o a - Error.o a - FragCds.o a - FragDist.o a - HierarchVars.o a - lodmats.o a - MultiPose.o a - MultiPose2MSA.o a - MultiPosePth.o a - PCAstats.o a - pdbIO.o a - pdbMalloc.o a - pdbStats.o a - pdbUtils.o a - QuarticHornFrag.o a - RandCds.o a - pdbSSM.o a - ProcGSLSVD.o a - ProcGSLSVDNu.o a - ProcJacobiSVD.o a - GibbsMet.o a - qcprot.o a - StructAlign.o a - NWfill.o a - termcol.o a - theseuslib.o mv libtheseus.a lib/libtheseus.a ranlib lib/libtheseus.a /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c theseus.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -Wl,-z,relro -Wl,-z,now -L./lib theseus.o CovMat.o DistMat.o Embed.o Error.o FragCds.o FragDist.o HierarchVars.o lodmats.o MultiPose.o MultiPose2MSA.o MultiPosePth.o PCAstats.o pdbIO.o pdbMalloc.o pdbStats.o pdbUtils.o QuarticHornFrag.o RandCds.o pdbSSM.o ProcGSLSVD.o ProcGSLSVDNu.o ProcJacobiSVD.o GibbsMet.o qcprot.o StructAlign.o NWfill.o termcol.o theseuslib.o -lgsl -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus -lpthread -lgsl -lgslcblas -lm -lc -o theseus make[2]: Leaving directory '/build/theseus-3.3.0' make[1]: Leaving directory '/build/theseus-3.3.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/theseus-3.3.0' make install INSTALLDIR=/build/theseus-3.3.0/debian/theseus/usr/bin make[2]: Entering directory '/build/theseus-3.3.0' chmod +x theseus theseus_align cp theseus theseus_align /build/theseus-3.3.0/debian/theseus/usr/bin make[2]: Leaving directory '/build/theseus-3.3.0' # Fix wrong path used in upstream script. Fixing it here is safer than # changing the patch for any new upstream release sed -e 's?/usr/local/bin?/usr/bin?' \ -e 's?/usr/bin/sed?/bin/sed?' \ theseus_align > debian/theseus/usr/bin/theseus_align make[1]: Leaving directory '/build/theseus-3.3.0' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/theseus-3.3.0' # nothing to do here make[1]: Leaving directory '/build/theseus-3.3.0' debian/rules override_dh_install make[1]: Entering directory '/build/theseus-3.3.0' dh_install # remove macos resource files find debian -name "._*" -delete find debian -name ".DS_*" -delete make[1]: Leaving directory '/build/theseus-3.3.0' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'theseus-dbgsym' in '../theseus-dbgsym_3.3.0-14_i386.deb'. dpkg-deb: building package 'theseus' in '../theseus_3.3.0-14_i386.deb'. dpkg-deb: building package 'theseus-examples' in '../theseus-examples_3.3.0-14_all.deb'. dpkg-genbuildinfo --build=binary -O../theseus_3.3.0-14_i386.buildinfo dpkg-genchanges --build=binary -O../theseus_3.3.0-14_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5654 and its subdirectories I: Current time: Mon May 20 07:51:35 -12 2024 I: pbuilder-time-stamp: 1716234695 Tue Apr 18 13:28:36 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Tue Apr 18 13:28:36 UTC 2023 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Tue Apr 18 13:30:56 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. Tue Apr 18 13:30:56 UTC 2023 I: theseus_3.3.0-14_i386.changes: Format: 1.8 Date: Fri, 18 Nov 2022 18:15:57 +0100 Source: theseus Binary: theseus theseus-dbgsym theseus-examples Architecture: i386 all Version: 3.3.0-14 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: theseus - superimpose macromolecules using maximum likelihood theseus-examples - superimpose macromolecules using maximum likelihood (examples) Changes: theseus (3.3.0-14) unstable; urgency=medium . * Building theseus only on amd64 and i386, see Bug #1017563 * Adding myself as uploader Checksums-Sha1: 5ec0e4e87587098b9208890acb529f90b3739742 15712 theseus-dbgsym_3.3.0-14_i386.deb a8712359acc50cd7f60ddf5b70b75d581ed77a46 20814372 theseus-examples_3.3.0-14_all.deb 8d287daa6e4c47169f3653a0975acf9dca6a0526 5465 theseus_3.3.0-14_i386.buildinfo 74b716aefcd561ee7708b4bfae329430d20e0f5e 290296 theseus_3.3.0-14_i386.deb Checksums-Sha256: ea14b4406ed290b3c1fbe09682249aade4c78b60687ab04a6d5505e513a41bb8 15712 theseus-dbgsym_3.3.0-14_i386.deb 28edee17ca89b2d75d34c022cb8dd8ed60d4b0597a2f26f3c655f497eb776978 20814372 theseus-examples_3.3.0-14_all.deb d5e5f491783aa4c04de136490a4e28dfe25026fd1f86073de748746558173cd7 5465 theseus_3.3.0-14_i386.buildinfo 96e9e0e6748216223e3b12bf092ad166fec29069ae2063e34ff28dfa01e0e02d 290296 theseus_3.3.0-14_i386.deb Files: d58d5ef1f7d1be459317f7c262483567 15712 debug optional theseus-dbgsym_3.3.0-14_i386.deb 9e4be7bc3be47452e9e344aabf66bf1b 20814372 science optional theseus-examples_3.3.0-14_all.deb 1a38952a5713f4d13b66f2a8b8a3732b 5465 science optional theseus_3.3.0-14_i386.buildinfo 3a38aaa70cb3e24fb5dac7d86eca7f58 290296 science optional theseus_3.3.0-14_i386.deb Tue Apr 18 13:30:57 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.HUv7qO3Y/theseus_3.3.0-14.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.HUv7qO3Y/theseus_3.3.0-14.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.HUv7qO3Y/theseus_3.3.0-14.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.HUv7qO3Y/b1/theseus_3.3.0-14_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.HUv7qO3Y/b2/theseus_3.3.0-14_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.801s) 0.801s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.310s) 0.310s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue Apr 18 13:30:59 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 18 13:30:59 UTC 2023 I: theseus from bookworm built successfully and reproducibly on i386. Tue Apr 18 13:31:00 UTC 2023 I: Submitting .buildinfo files to external archives: Tue Apr 18 13:31:00 UTC 2023 I: Submitting 8.0K b1/theseus_3.3.0-14_i386.buildinfo.asc Tue Apr 18 13:31:01 UTC 2023 I: Submitting 8.0K b2/theseus_3.3.0-14_i386.buildinfo.asc Tue Apr 18 13:31:02 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 18 13:31:02 UTC 2023 I: Done submitting .buildinfo files. Tue Apr 18 13:31:02 UTC 2023 I: Removing signed theseus_3.3.0-14_i386.buildinfo.asc files: removed './b1/theseus_3.3.0-14_i386.buildinfo.asc' removed './b2/theseus_3.3.0-14_i386.buildinfo.asc'