Fri Apr 28 01:24:01 UTC 2023 I: starting to build r-bioc-scrnaseq/bookworm/i386 on jenkins on '2023-04-28 01:23' Fri Apr 28 01:24:01 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/11242/console.log Fri Apr 28 01:24:01 UTC 2023 I: Downloading source for bookworm/r-bioc-scrnaseq=2.12.0+ds-1 --2023-04-28 01:24:02-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-scrnaseq/r-bioc-scrnaseq_2.12.0%2bds-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2360 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-scrnaseq_2.12.0+ds-1.dsc’ 0K .. 100% 178M=0s 2023-04-28 01:24:02 (178 MB/s) - ‘r-bioc-scrnaseq_2.12.0+ds-1.dsc’ saved [2360/2360] Fri Apr 28 01:24:02 UTC 2023 I: r-bioc-scrnaseq_2.12.0+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-scrnaseq Binary: r-bioc-scrnaseq Architecture: all Version: 2.12.0+ds-1 Maintainer: Debian R Packages Maintainers Uploaders: Michael R. Crusoe Homepage: https://bioconductor.org/packages/data/experiment/scRNAseq/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-scrnaseq Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-scrnaseq.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-experimenthub (>= 2.3.4), r-bioc-annotationhub (>= 3.3.6), r-bioc-annotationdbi, r-bioc-ensembldb, r-bioc-genomicfeatures Package-List: r-bioc-scrnaseq deb gnu-r optional arch=all Checksums-Sha1: 94eb6e95a7c78a476f89cff4642a2d6f575b587b 87016 r-bioc-scrnaseq_2.12.0+ds.orig.tar.xz 5aee787750d832c3496a067b9f6009677fdc0b41 5648 r-bioc-scrnaseq_2.12.0+ds-1.debian.tar.xz Checksums-Sha256: 43ec8bdef76eea71f8c4c7a4abe05897ef7a8db0c3f745acaaf3537d63fab602 87016 r-bioc-scrnaseq_2.12.0+ds.orig.tar.xz d9c7e6129b2991ea9344cc600bae2f1febe534e4056a8e24c67b0ba4407146d3 5648 r-bioc-scrnaseq_2.12.0+ds-1.debian.tar.xz Files: e03d74c7a7e8d355f45557c87f1ab6ea 87016 r-bioc-scrnaseq_2.12.0+ds.orig.tar.xz da791abf4a7883fa5ade5b6f7015561c 5648 r-bioc-scrnaseq_2.12.0+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN8dSQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEupQ//Qy9CJw5U1zBA/AZogLktMuRUlJanVhJn S8eznBU/0jb8q5gl/jIhFZ0PgJPqsTiY2zPGD+JKMd5YmjSJSQiDk9YmS5SVcSVr KF/8ih+Cr992EJJvX6B6ILh+zuiQNUPBaL2oillzgx0nkBnwyZhpma7mZcqzeDB9 5Vbf9y5prmFZauJkbucbIPTaleQzBH1v9iqtf+Rr4dtpUVGpzarls91V5gic93fv fF3LGdD9hcb8IwloewtLPOJ6LkvPM+eIGBHeC4abza1GAPDK5nT7XJHKa2WA85mv xe5wPW/vWt8D+ZQMJZKia6wcJM28CaZgiBbC9vZW6JVZjHW7N9nzsFOI1V+zI+IZ TKl8VMyaw1I3LT/1gbYUHIxdIGJl5vB3r+9hGWX4oJQGtI2F0mDV6gSx6q/Hn3y1 +y+oEJWX+BrzqcMysTU0m+0QL6IZUKXy8A0jeyozAFtbClwIPkuMmbxhRKrx0Feq VVD+d0X1xYp8bTLWMO1nAa+xk3YFDENjRO8zFGfFN2L+77MaVLdHuPs/n+dP1gyW X6dTXyYzRmZDlUPSg8IGjfWiq97GpGbU0AceeyEEMa91DYyVrPFHagBk5iuuTxmt kZaVOWhwMm9pB5oYTduTBoLMe83MBf2/XD/FUfuakg+drz/07BVm6jibH0AN9m8a EsFePuVFL/k= =0xba -----END PGP SIGNATURE----- Fri Apr 28 01:24:02 UTC 2023 I: Checking whether the package is not for us Fri Apr 28 01:24:02 UTC 2023 I: Starting 1st build on remote node ionos16-i386.debian.net. Fri Apr 28 01:24:02 UTC 2023 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Fri Apr 28 01:25:36 UTC 2023 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 29 19:47:03 -12 2024 I: pbuilder-time-stamp: 1717055223 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-scrnaseq_2.12.0+ds-1.dsc] I: copying [./r-bioc-scrnaseq_2.12.0+ds.orig.tar.xz] I: copying [./r-bioc-scrnaseq_2.12.0+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 21 19:07:16 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-scrnaseq_2.12.0+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-scrnaseq in r-bioc-scrnaseq-2.12.0+ds dpkg-source: info: unpacking r-bioc-scrnaseq_2.12.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-scrnaseq_2.12.0+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-online-tests I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/45285/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='a212e5fbc01343c98344a02e6e9fc14b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='45285' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.faUmXtYj/pbuilderrc_dGHb --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.faUmXtYj/b1 --logfile b1/build.log r-bioc-scrnaseq_2.12.0+ds-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/45285/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-experimenthub (>= 2.3.4), r-bioc-annotationhub (>= 3.3.6), r-bioc-annotationdbi, r-bioc-ensembldb, r-bioc-genomicfeatures dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-singlecellexperiment; however: Package r-bioc-singlecellexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-experimenthub (>= 2.3.4); however: Package r-bioc-experimenthub is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotationhub (>= 3.3.6); however: Package r-bioc-annotationhub is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotationdbi; however: Package r-bioc-annotationdbi is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-ensembldb; however: Package r-bioc-ensembldb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicfeatures; however: Package r-bioc-genomicfeatures is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-datatables-extensions{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblua5.3-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} libyaml-0-2{a} littler{a} m4{a} man-db{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-annotationdbi{a} r-bioc-annotationfilter{a} r-bioc-annotationhub{a} r-bioc-biobase{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biocversion{a} r-bioc-biomart{a} r-bioc-biostrings{a} r-bioc-delayedarray{a} r-bioc-ensembldb{a} r-bioc-experimenthub{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicfeatures{a} r-bioc-genomicranges{a} r-bioc-interactivedisplaybase{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-matrixgenerics{a} r-bioc-protgenerics{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4vectors{a} r-bioc-singlecellexperiment{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-assertthat{a} r-cran-base64enc{a} r-cran-bh{a} r-cran-biocmanager{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-codetools{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-dt{a} r-cran-ellipsis{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-fontawesome{a} r-cran-formatr{a} r-cran-fs{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-generics{a} r-cran-glue{a} r-cran-highr{a} r-cran-hms{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-httr{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-lambda.r{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-promises{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rsqlite{a} r-cran-sass{a} r-cran-shiny{a} r-cran-snow{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xml{a} r-cran-xml2{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-covr r-cran-data.table r-cran-dbitest r-cran-decor r-cran-dygraphs r-cran-formattable r-cran-future r-cran-ggplot2 r-cran-lobstr r-cran-lubridate r-cran-markdown r-cran-mockery r-cran-mockr r-cran-pkgload r-cran-rmysql r-cran-rpostgresql r-cran-rsconnect r-cran-rsvg r-cran-runit r-cran-sodium r-cran-sp r-cran-survival r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyr r-cran-tikzdevice r-cran-tufte r-cran-waldo r-cran-webutils r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 334 newly installed, 0 to remove and 0 not upgraded. Need to get 262 MB of archives. After unpacking 956 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.8-1 [1412 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 26 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 zip i386 3.0-13 [236 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 unzip i386 6.0-28 [166 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libpaper1 i386 1.1.29 [12.7 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libpaper-utils i386 1.1.29 [8972 B] Get: 40 http://deb.debian.org/debian bookworm/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-4 [410 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-9 [420 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libthai-data all 0.1.29-1 [176 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libdatrie1 i386 0.2.13-2+b1 [45.0 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libthai0 i386 0.1.29-1 [58.6 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libpango-1.0-0 i386 1.50.12+ds-1 [220 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libpangoft2-1.0-0 i386 1.50.12+ds-1 [50.5 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libpangocairo-1.0-0 i386 1.50.12+ds-1 [35.4 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libtcl8.6 i386 8.6.13+dfsg-2 [1095 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libxft2 i386 2.3.6-1 [62.8 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libtk8.6 i386 8.6.13-2 [824 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 r-base-core i386 4.2.2.20221110-2 [26.1 MB] Get: 98 http://deb.debian.org/debian bookworm/main i386 libgfortran-12-dev i386 12.2.0-14 [761 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 gfortran-12 i386 12.2.0-14 [10.5 MB] Get: 100 http://deb.debian.org/debian bookworm/main i386 gfortran i386 4:12.2.0-3 [1432 B] Get: 101 http://deb.debian.org/debian bookworm/main i386 libblas-dev i386 3.11.0-2 [151 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 liblapack-dev i386 3.11.0-2 [4187 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 libncurses6 i386 6.4-2 [111 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libncurses-dev i386 6.4-2 [379 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libncurses5-dev i386 6.4-2 [932 B] Get: 106 http://deb.debian.org/debian bookworm/main i386 libreadline-dev i386 8.2-1.3 [164 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2 [304 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 libjpeg-dev i386 1:2.1.5-2 [71.8 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libpcre2-16-0 i386 10.42-1 [243 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 libpcre2-32-0 i386 10.42-1 [232 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 libpcre2-posix3 i386 10.42-1 [55.4 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 libpcre2-dev i386 10.42-1 [761 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 libpcre3 i386 2:8.39-15 [340 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 libpcre16-3 i386 2:8.39-15 [258 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 libpcre32-3 i386 2:8.39-15 [248 kB] Get: 116 http://deb.debian.org/debian bookworm/main i386 libpcrecpp0v5 i386 2:8.39-15 [144 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libpcre3-dev i386 2:8.39-15 [669 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 libpng-dev i386 1.6.39-2 [367 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 libbz2-dev i386 1.0.8-5+b1 [31.5 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 liblzma-dev i386 5.4.1-0.2 [272 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libxmuu1 i386 2:1.1.3-3 [24.1 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 xauth i386 1:1.1.2-1 [36.7 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 libpkgconf3 i386 1.8.1-1 [38.3 kB] Get: 127 http://deb.debian.org/debian bookworm/main i386 pkgconf-bin i386 1.8.1-1 [29.8 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 pkgconf i386 1.8.1-1 [25.9 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 pkg-config i386 1.8.1-1 [13.7 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 r-base-dev all 4.2.2.20221110-2 [4492 B] Get: 131 http://deb.debian.org/debian bookworm/main i386 libfile-which-perl all 1.27-2 [15.1 kB] Get: 132 http://deb.debian.org/debian bookworm/main i386 libswitch-perl all 2.17-3 [20.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main i386 libclone-perl i386 0.46-1 [13.8 kB] Get: 134 http://deb.debian.org/debian bookworm/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 libhttp-date-perl all 6.05-2 [10.5 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 138 http://deb.debian.org/debian bookworm/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main i386 libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 140 http://deb.debian.org/debian bookworm/main i386 liburi-perl all 5.17-1 [90.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main i386 libhttp-message-perl all 6.44-1 [81.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main i386 libparams-util-perl i386 1.102-2+b1 [25.0 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 libsub-install-perl all 0.929-1 [10.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main i386 libdata-optlist-perl all 0.113-1 [10.6 kB] Get: 145 http://deb.debian.org/debian bookworm/main i386 libb-hooks-op-check-perl i386 0.22-2+b1 [10.6 kB] Get: 146 http://deb.debian.org/debian bookworm/main i386 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main i386 libdevel-callchecker-perl i386 0.008-2 [15.8 kB] Get: 148 http://deb.debian.org/debian bookworm/main i386 libparams-classify-perl i386 0.015-2+b1 [23.7 kB] Get: 149 http://deb.debian.org/debian bookworm/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 150 http://deb.debian.org/debian bookworm/main i386 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 151 http://deb.debian.org/debian bookworm/main i386 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 152 http://deb.debian.org/debian bookworm/main i386 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 153 http://deb.debian.org/debian bookworm/main i386 libclass-load-perl all 0.25-2 [15.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main i386 libclass-load-xs-perl i386 0.10-2+b1 [14.1 kB] Get: 155 http://deb.debian.org/debian bookworm/main i386 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 156 http://deb.debian.org/debian bookworm/main i386 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 157 http://deb.debian.org/debian bookworm/main i386 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 158 http://deb.debian.org/debian bookworm/main i386 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 159 http://deb.debian.org/debian bookworm/main i386 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 160 http://deb.debian.org/debian bookworm/main i386 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 161 http://deb.debian.org/debian bookworm/main i386 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 162 http://deb.debian.org/debian bookworm/main i386 libsub-exporter-perl all 0.989-1 [50.5 kB] Get: 163 http://deb.debian.org/debian bookworm/main i386 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 164 http://deb.debian.org/debian bookworm/main i386 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 165 http://deb.debian.org/debian bookworm/main i386 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 166 http://deb.debian.org/debian bookworm/main i386 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 167 http://deb.debian.org/debian bookworm/main i386 libpackage-stash-xs-perl i386 0.30-1+b1 [20.2 kB] Get: 168 http://deb.debian.org/debian bookworm/main i386 libmoose-perl i386 2.2203-1 [795 kB] Get: 169 http://deb.debian.org/debian bookworm/main i386 libvariable-magic-perl i386 0.63-1+b1 [44.5 kB] Get: 170 http://deb.debian.org/debian bookworm/main i386 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get: 171 http://deb.debian.org/debian bookworm/main i386 libsub-identify-perl i386 0.14-3 [10.9 kB] Get: 172 http://deb.debian.org/debian bookworm/main i386 libsub-name-perl i386 0.26-2+b1 [12.7 kB] Get: 173 http://deb.debian.org/debian bookworm/main i386 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 174 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB] Get: 175 http://deb.debian.org/debian bookworm/main i386 libwww-curl-perl i386 4.17-10 [62.0 kB] Get: 176 http://deb.debian.org/debian bookworm/main i386 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 177 http://deb.debian.org/debian bookworm/main i386 dh-r all 20230121 [37.9 kB] Get: 178 http://deb.debian.org/debian bookworm/main i386 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 179 http://deb.debian.org/debian bookworm/main i386 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 180 http://deb.debian.org/debian bookworm/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 181 http://deb.debian.org/debian bookworm/main i386 javascript-common all 11+nmu1 [6260 B] Get: 182 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB] Get: 183 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 184 http://deb.debian.org/debian bookworm/main i386 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 185 http://deb.debian.org/debian bookworm/main i386 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 186 http://deb.debian.org/debian bookworm/main i386 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 187 http://deb.debian.org/debian bookworm/main i386 libjs-d3 all 3.5.17-4 [132 kB] Get: 188 http://deb.debian.org/debian bookworm/main i386 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 189 http://deb.debian.org/debian bookworm/main i386 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 190 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 191 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 192 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get: 193 http://deb.debian.org/debian bookworm/main i386 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 194 http://deb.debian.org/debian bookworm/main i386 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 195 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 196 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 197 http://deb.debian.org/debian bookworm/main i386 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 198 http://deb.debian.org/debian bookworm/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 199 http://deb.debian.org/debian bookworm/main i386 libjs-modernizr all 2.6.2+ds1-5 [47.1 kB] Get: 200 http://deb.debian.org/debian bookworm/main i386 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 201 http://deb.debian.org/debian bookworm/main i386 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 202 http://deb.debian.org/debian bookworm/main i386 liblua5.3-0 i386 5.3.6-2 [144 kB] Get: 203 http://deb.debian.org/debian bookworm/main i386 libuv1 i386 1.44.2-1 [147 kB] Get: 204 http://deb.debian.org/debian bookworm/main i386 libyaml-0-2 i386 0.2.5-1 [55.9 kB] Get: 205 http://deb.debian.org/debian bookworm/main i386 r-cran-littler i386 0.3.17-1 [93.1 kB] Get: 206 http://deb.debian.org/debian bookworm/main i386 littler all 0.3.17-1 [14.4 kB] Get: 207 http://deb.debian.org/debian bookworm/main i386 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 208 http://deb.debian.org/debian bookworm/main i386 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 209 http://deb.debian.org/debian bookworm/main i386 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 210 http://deb.debian.org/debian bookworm/main i386 pandoc-data all 2.17.1.1-1.1 [417 kB] Get: 211 http://deb.debian.org/debian bookworm/main i386 pandoc i386 2.17.1.1-1.1 [27.5 MB] Get: 212 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get: 213 http://deb.debian.org/debian bookworm/main i386 r-bioc-biobase i386 2.58.0-2 [2113 kB] Get: 214 http://deb.debian.org/debian bookworm/main i386 r-bioc-s4vectors i386 0.36.1-1 [2033 kB] Get: 215 http://deb.debian.org/debian bookworm/main i386 r-bioc-iranges i386 2.32.0-1 [2197 kB] Get: 216 http://deb.debian.org/debian bookworm/main i386 r-cran-dbi all 1.1.3-1 [687 kB] Get: 217 http://deb.debian.org/debian bookworm/main i386 r-cran-bit i386 4.0.5-1 [1070 kB] Get: 218 http://deb.debian.org/debian bookworm/main i386 r-cran-bit64 i386 4.0.5-1 [470 kB] Get: 219 http://deb.debian.org/debian bookworm/main i386 r-cran-rlang i386 1.0.6-1 [1634 kB] Get: 220 http://deb.debian.org/debian bookworm/main i386 r-cran-cli i386 3.6.0-1 [1288 kB] Get: 221 http://deb.debian.org/debian bookworm/main i386 r-cran-glue i386 1.6.2-1 [152 kB] Get: 222 http://deb.debian.org/debian bookworm/main i386 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get: 223 http://deb.debian.org/debian bookworm/main i386 r-cran-vctrs i386 0.5.2-1 [1388 kB] Get: 224 http://deb.debian.org/debian bookworm/main i386 r-cran-blob all 1.2.3-1 [49.5 kB] Get: 225 http://deb.debian.org/debian bookworm/main i386 r-cran-fastmap i386 1.1.1-1 [70.3 kB] Get: 226 http://deb.debian.org/debian bookworm/main i386 r-cran-cachem i386 1.0.7-1 [71.8 kB] Get: 227 http://deb.debian.org/debian bookworm/main i386 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 228 http://deb.debian.org/debian bookworm/main i386 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 229 http://deb.debian.org/debian bookworm/main i386 r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get: 230 http://deb.debian.org/debian bookworm/main i386 r-cran-rcpp i386 1.0.10-1 [2071 kB] Get: 231 http://deb.debian.org/debian bookworm/main i386 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 232 http://deb.debian.org/debian bookworm/main i386 r-cran-rsqlite i386 2.2.20-1 [1161 kB] Get: 233 http://deb.debian.org/debian bookworm/main i386 r-cran-curl i386 5.0.0+dfsg-1 [174 kB] Get: 234 http://deb.debian.org/debian bookworm/main i386 r-cran-jsonlite i386 1.8.4+dfsg-1 [445 kB] Get: 235 http://deb.debian.org/debian bookworm/main i386 r-cran-mime i386 0.12-1+b1 [36.1 kB] Get: 236 http://deb.debian.org/debian bookworm/main i386 r-cran-sys i386 3.4.1-1 [43.1 kB] Get: 237 http://deb.debian.org/debian bookworm/main i386 r-cran-askpass i386 1.1-2 [22.3 kB] Get: 238 http://deb.debian.org/debian bookworm/main i386 r-cran-openssl i386 2.0.5+dfsg-1 [394 kB] Get: 239 http://deb.debian.org/debian bookworm/main i386 r-cran-r6 all 2.5.1-1 [105 kB] Get: 240 http://deb.debian.org/debian bookworm/main i386 r-cran-httr all 1.4.5+dfsg-1 [465 kB] Get: 241 http://deb.debian.org/debian bookworm/main i386 r-cran-png i386 0.1-8-1 [41.7 kB] Get: 242 http://deb.debian.org/debian bookworm/main i386 r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B] Get: 243 http://deb.debian.org/debian bookworm/main i386 r-bioc-xvector i386 0.38.0-1 [621 kB] Get: 244 http://deb.debian.org/debian bookworm/main i386 r-cran-bitops i386 1.0-7-1 [30.5 kB] Get: 245 http://deb.debian.org/debian bookworm/main i386 r-cran-rcurl i386 1.98-1.10+dfsg-1 [785 kB] Get: 246 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB] Get: 247 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomeinfodb all 1.34.9-1 [3938 kB] Get: 248 http://deb.debian.org/debian bookworm/main i386 r-cran-crayon all 1.5.2-1 [165 kB] Get: 249 http://deb.debian.org/debian bookworm/main i386 r-bioc-biostrings i386 2.66.0-1 [13.8 MB] Get: 250 http://deb.debian.org/debian bookworm/main i386 r-bioc-keggrest all 1.38.0+dfsg-1 [179 kB] Get: 251 http://deb.debian.org/debian bookworm/main i386 r-bioc-annotationdbi all 1.60.0-1 [4696 kB] Get: 252 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomicranges i386 1.50.2+dfsg-1 [1796 kB] Get: 253 http://deb.debian.org/debian bookworm/main i386 r-cran-lazyeval i386 0.2.2-1+b1 [142 kB] Get: 254 http://deb.debian.org/debian bookworm/main i386 r-bioc-annotationfilter all 1.22.0+dfsg-1 [234 kB] Get: 255 http://deb.debian.org/debian bookworm/main i386 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get: 256 http://deb.debian.org/debian bookworm/main i386 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 257 http://deb.debian.org/debian bookworm/main i386 r-cran-magrittr i386 2.0.3-1 [201 kB] Get: 258 http://deb.debian.org/debian bookworm/main i386 r-cran-fansi i386 1.0.4-1 [624 kB] Get: 259 http://deb.debian.org/debian bookworm/main i386 r-cran-utf8 i386 1.2.3-1 [135 kB] Get: 260 http://deb.debian.org/debian bookworm/main i386 r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get: 261 http://deb.debian.org/debian bookworm/main i386 r-cran-tibble i386 3.1.8+dfsg-1 [513 kB] Get: 262 http://deb.debian.org/debian bookworm/main i386 r-cran-withr all 2.5.0-1 [236 kB] Get: 263 http://deb.debian.org/debian bookworm/main i386 r-cran-tidyselect i386 1.2.0+dfsg-1 [219 kB] Get: 264 http://deb.debian.org/debian bookworm/main i386 r-cran-dplyr i386 1.0.10-1 [1230 kB] Get: 265 http://deb.debian.org/debian bookworm/main i386 r-cran-purrr i386 1.0.1-1 [508 kB] Get: 266 http://deb.debian.org/debian bookworm/main i386 r-cran-dbplyr all 2.3.0+dfsg-1 [1055 kB] Get: 267 http://deb.debian.org/debian bookworm/main i386 r-cran-rappdirs i386 0.3.3-1 [47.5 kB] Get: 268 http://deb.debian.org/debian bookworm/main i386 r-cran-filelock i386 1.0.2-2 [24.9 kB] Get: 269 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocfilecache all 2.6.1+dfsg-1 [296 kB] Get: 270 http://deb.debian.org/debian bookworm/main i386 r-cran-biocmanager all 1.30.20+dfsg-1 [126 kB] Get: 271 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocversion all 3.16.0-1 [10.6 kB] Get: 272 http://deb.debian.org/debian bookworm/main i386 r-cran-later i386 1.3.0+dfsg-1+b1 [120 kB] Get: 273 http://deb.debian.org/debian bookworm/main i386 r-cran-promises i386 1.2.0.1+dfsg-1 [275 kB] Get: 274 http://deb.debian.org/debian bookworm/main i386 r-cran-httpuv i386 1.6.9+dfsg-1 [491 kB] Get: 275 http://deb.debian.org/debian bookworm/main i386 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 276 http://deb.debian.org/debian bookworm/main i386 r-cran-digest i386 0.6.31-1 [179 kB] Get: 277 http://deb.debian.org/debian bookworm/main i386 r-cran-base64enc i386 0.1-3-3 [28.4 kB] Get: 278 http://deb.debian.org/debian bookworm/main i386 r-cran-ellipsis i386 0.3.2-2 [35.3 kB] Get: 279 http://deb.debian.org/debian bookworm/main i386 r-cran-htmltools i386 0.5.4-1 [365 kB] Get: 280 http://deb.debian.org/debian bookworm/main i386 r-cran-fontawesome all 0.5.0-1 [1304 kB] Get: 281 http://deb.debian.org/debian bookworm/main i386 r-cran-sourcetools i386 0.1.7-1-1 [47.1 kB] Get: 282 http://deb.debian.org/debian bookworm/main i386 r-cran-commonmark i386 1.8.1-1 [120 kB] Get: 283 http://deb.debian.org/debian bookworm/main i386 r-cran-fs i386 1.6.1+dfsg-1 [228 kB] Get: 284 http://deb.debian.org/debian bookworm/main i386 r-cran-sass i386 0.4.5+dfsg-1 [990 kB] Get: 285 http://deb.debian.org/debian bookworm/main i386 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 286 http://deb.debian.org/debian bookworm/main i386 r-cran-bslib all 0.4.2+dfsg-1 [3773 kB] Get: 287 http://deb.debian.org/debian bookworm/main i386 r-cran-shiny all 1.7.4+dfsg-2 [2732 kB] Get: 288 http://deb.debian.org/debian bookworm/main i386 r-cran-yaml i386 2.3.7-1 [108 kB] Get: 289 http://deb.debian.org/debian bookworm/main i386 r-cran-evaluate all 0.20-1 [85.9 kB] Get: 290 http://deb.debian.org/debian bookworm/main i386 r-cran-xfun i386 0.37+dfsg-1 [395 kB] Get: 291 http://deb.debian.org/debian bookworm/main i386 r-cran-highr all 0.10+dfsg-1 [38.1 kB] Get: 292 http://deb.debian.org/debian bookworm/main i386 r-cran-knitr all 1.42+dfsg-1 [901 kB] Get: 293 http://deb.debian.org/debian bookworm/main i386 r-cran-stringi i386 1.7.12-1 [872 kB] Get: 294 http://deb.debian.org/debian bookworm/main i386 r-cran-stringr all 1.5.0-1 [295 kB] Get: 295 http://deb.debian.org/debian bookworm/main i386 r-cran-tinytex all 0.44-1 [138 kB] Get: 296 http://deb.debian.org/debian bookworm/main i386 r-cran-rmarkdown all 2.20+dfsg-1 [2265 kB] Get: 297 http://deb.debian.org/debian bookworm/main i386 r-cran-htmlwidgets all 1.6.1+dfsg-1 [120 kB] Get: 298 http://deb.debian.org/debian bookworm/main i386 r-cran-crosstalk all 1.2.0+dfsg-1 [171 kB] Get: 299 http://deb.debian.org/debian bookworm/main i386 r-cran-dt all 0.27+dfsg-1 [236 kB] Get: 300 http://deb.debian.org/debian bookworm/main i386 r-bioc-interactivedisplaybase all 1.36.0+dfsg-1 [30.0 kB] Get: 301 http://deb.debian.org/debian bookworm/main i386 r-bioc-annotationhub all 3.6.0+dfsg-1 [435 kB] Get: 302 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocio all 1.8.0+dfsg-1 [201 kB] Get: 303 http://deb.debian.org/debian bookworm/main i386 r-cran-formatr all 1.14-1 [152 kB] Get: 304 http://deb.debian.org/debian bookworm/main i386 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 305 http://deb.debian.org/debian bookworm/main i386 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 306 http://deb.debian.org/debian bookworm/main i386 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 307 http://deb.debian.org/debian bookworm/main i386 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 308 http://deb.debian.org/debian bookworm/main i386 r-cran-codetools all 0.2-19-1 [90.9 kB] Get: 309 http://deb.debian.org/debian bookworm/main i386 r-cran-bh all 1.74.0-2 [5524 B] Get: 310 http://deb.debian.org/debian bookworm/main i386 r-cran-cpp11 all 0.4.3-1 [223 kB] Get: 311 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocparallel i386 1.32.5-1 [1338 kB] Get: 312 http://deb.debian.org/debian bookworm/main i386 r-cran-xml i386 3.99-0.13-1 [1721 kB] Get: 313 http://deb.debian.org/debian bookworm/main i386 r-cran-hms all 1.1.2-1 [104 kB] Get: 314 http://deb.debian.org/debian bookworm/main i386 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get: 315 http://deb.debian.org/debian bookworm/main i386 r-cran-progress all 1.2.2-2 [88.9 kB] Get: 316 http://deb.debian.org/debian bookworm/main i386 r-cran-xml2 i386 1.3.3-1+b1 [282 kB] Get: 317 http://deb.debian.org/debian bookworm/main i386 r-bioc-biomart all 2.54.0+dfsg-1 [442 kB] Get: 318 http://deb.debian.org/debian bookworm/main i386 r-cran-lattice i386 0.20-45-3 [1172 kB] Get: 319 http://deb.debian.org/debian bookworm/main i386 r-cran-matrix i386 1.5-3-1 [3821 kB] Get: 320 http://deb.debian.org/debian bookworm/main i386 r-cran-matrixstats i386 0.63.0-1 [466 kB] Get: 321 http://deb.debian.org/debian bookworm/main i386 r-bioc-matrixgenerics all 1.10.0-1 [302 kB] Get: 322 http://deb.debian.org/debian bookworm/main i386 r-bioc-delayedarray i386 0.24.0+dfsg-1 [1939 kB] Get: 323 http://deb.debian.org/debian bookworm/main i386 r-bioc-rhtslib i386 2.0.0+dfsg-1 [1339 kB] Get: 324 http://deb.debian.org/debian bookworm/main i386 r-bioc-rsamtools i386 2.14.0-1 [3802 kB] Get: 325 http://deb.debian.org/debian bookworm/main i386 r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB] Get: 326 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomicalignments i386 1.34.0-1 [2074 kB] Get: 327 http://deb.debian.org/debian bookworm/main i386 r-cran-rjson i386 0.2.21-1 [140 kB] Get: 328 http://deb.debian.org/debian bookworm/main i386 r-cran-restfulr i386 0.0.15-1 [382 kB] Get: 329 http://deb.debian.org/debian bookworm/main i386 r-bioc-rtracklayer i386 1.58.0-1 [5125 kB] Get: 330 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomicfeatures all 1.50.4+dfsg-1 [1676 kB] Get: 331 http://deb.debian.org/debian bookworm/main i386 r-bioc-protgenerics all 1.30.0-1 [215 kB] Get: 332 http://deb.debian.org/debian bookworm/main i386 r-bioc-ensembldb all 2.22.0+dfsg-1 [1484 kB] Get: 333 http://deb.debian.org/debian bookworm/main i386 r-bioc-experimenthub all 2.6.0+ds-1 [79.3 kB] Get: 334 http://deb.debian.org/debian bookworm/main i386 r-bioc-singlecellexperiment all 1.20.0+ds-1 [826 kB] Fetched 262 MB in 5s (53.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.8-1_i386.deb ... 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Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. 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Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package zip. Preparing to unpack .../035-zip_3.0-13_i386.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../036-unzip_6.0-28_i386.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:i386. Preparing to unpack .../037-libpaper1_1.1.29_i386.deb ... Unpacking libpaper1:i386 (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../038-libpaper-utils_1.1.29_i386.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:i386. 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Preparing to unpack .../052-libxcb1_1.15-1_i386.deb ... Unpacking libxcb1:i386 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../053-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../054-libx11-6_2%3a1.8.4-2_i386.deb ... Unpacking libx11-6:i386 (2:1.8.4-2) ... Selecting previously unselected package libxcb-render0:i386. Preparing to unpack .../055-libxcb-render0_1.15-1_i386.deb ... Unpacking libxcb-render0:i386 (1.15-1) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../056-libxcb-shm0_1.15-1_i386.deb ... Unpacking libxcb-shm0:i386 (1.15-1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../057-libxext6_2%3a1.3.4-1+b1_i386.deb ... Unpacking libxext6:i386 (2:1.3.4-1+b1) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../058-libxrender1_1%3a0.9.10-1.1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:i386. Preparing to unpack .../059-libcairo2_1.16.0-7_i386.deb ... Unpacking libcairo2:i386 (1.16.0-7) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../060-libsasl2-modules-db_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../061-libsasl2-2_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../062-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../063-libnghttp2-14_1.52.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.52.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../064-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../065-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../066-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../067-libcurl4_7.88.1-9_i386.deb ... Unpacking libcurl4:i386 (7.88.1-9) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../068-libglib2.0-0_2.74.6-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.74.6-2) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../069-libjpeg62-turbo_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-2) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../070-libgfortran5_12.2.0-14_i386.deb ... Unpacking libgfortran5:i386 (12.2.0-14) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../071-liblapack3_3.11.0-2_i386.deb ... Unpacking liblapack3:i386 (3.11.0-2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../072-fontconfig_2.14.1-4_i386.deb ... Unpacking fontconfig (2.14.1-4) ... Selecting previously unselected package libfribidi0:i386. Preparing to unpack .../073-libfribidi0_1.0.8-2.1_i386.deb ... Unpacking libfribidi0:i386 (1.0.8-2.1) ... Selecting previously unselected package libgraphite2-3:i386. Preparing to unpack .../074-libgraphite2-3_1.3.14-1_i386.deb ... Unpacking libgraphite2-3:i386 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:i386. Preparing to unpack .../075-libharfbuzz0b_6.0.0+dfsg-3_i386.deb ... Unpacking libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Selecting previously unselected package libthai-data. Preparing to unpack .../076-libthai-data_0.1.29-1_all.deb ... Unpacking libthai-data (0.1.29-1) ... Selecting previously unselected package libdatrie1:i386. Preparing to unpack .../077-libdatrie1_0.2.13-2+b1_i386.deb ... Unpacking libdatrie1:i386 (0.2.13-2+b1) ... Selecting previously unselected package libthai0:i386. Preparing to unpack .../078-libthai0_0.1.29-1_i386.deb ... Unpacking libthai0:i386 (0.1.29-1) ... Selecting previously unselected package libpango-1.0-0:i386. Preparing to unpack .../079-libpango-1.0-0_1.50.12+ds-1_i386.deb ... Unpacking libpango-1.0-0:i386 (1.50.12+ds-1) ... Selecting previously unselected package libpangoft2-1.0-0:i386. Preparing to unpack .../080-libpangoft2-1.0-0_1.50.12+ds-1_i386.deb ... Unpacking libpangoft2-1.0-0:i386 (1.50.12+ds-1) ... Selecting previously unselected package libpangocairo-1.0-0:i386. 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No schema files found: doing nothing. Setting up libjs-sifter.js (0.6.0+dfsg-3) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up node-html5shiv (3.7.3+dfsg-5) ... Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up libdeflate0:i386 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up file (1:5.44-3) ... Setting up libjs-modernizr (2.6.2+ds1-5) ... Setting up libjbig0:i386 (2.1-6.1) ... 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Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libicu-dev:i386 (72.1-3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.17-1) ... Setting up libblas-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libbz2-dev:i386 (1.0.8-5+b1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpcrecpp0v5:i386 (2:8.39-15) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up r-cran-bh (1.74.0-2) ... Setting up libice6:i386 (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libncurses-dev:i386 (6.4-2) ... Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libpcre2-dev:i386 (10.42-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up libpcre3-dev:i386 (2:8.39-15) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libreadline8:i386 (8.2-1.3) ... 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Setting up liblapack-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.113-1) ... Setting up pkg-config:i386 (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libncurses5-dev:i386 (6.4-2) ... Setting up libcurl4:i386 (7.88.1-9) ... Setting up libx11-6:i386 (2:1.8.4-2) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up libfontconfig1:i386 (2.14.1-4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libxmuu1:i386 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:i386 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:i386 (0.015-2+b1) ... Setting up libpango-1.0-0:i386 (1.50.12+ds-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:i386 (7.88.1-9) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:i386 (1.16.0-7) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:i386 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... 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Setting up r-bioc-biocversion (3.16.0-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-cran-biocmanager (1.30.20+dfsg-1) ... Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.1-1) ... Setting up r-cran-png (0.1-8-1) ... Setting up r-bioc-biobase (2.58.0-2) ... Setting up r-cran-jsonlite (1.8.4+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.3-1) ... Setting up r-cran-stringi (1.7.12-1) ... Setting up r-cran-cpp11 (0.4.3-1) ... Setting up r-bioc-s4vectors (0.36.1-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-later (1.3.0+dfsg-1+b1) ... Setting up r-cran-matrix (1.5-3-1) ... Setting up r-cran-tinytex (0.44-1) ... Setting up r-cran-knitr (1.42+dfsg-1) ... Setting up r-cran-cachem (1.0.7-1) ... Setting up r-bioc-iranges (2.32.0-1) ... Setting up r-cran-rjson (0.2.21-1) ... Setting up r-cran-rcurl (1.98-1.10+dfsg-1) ... Setting up r-cran-restfulr (0.0.15-1) ... Setting up r-cran-vctrs (0.5.2-1) ... Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ... Setting up r-cran-pillar (1.8.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-openssl (2.0.5+dfsg-1) ... Setting up r-cran-stringr (1.5.0-1) ... Setting up r-bioc-biocparallel (1.32.5-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-rhtslib (2.0.0+dfsg-1) ... Setting up r-cran-tibble (3.1.8+dfsg-1) ... Setting up r-bioc-biocio (1.8.0+dfsg-1) ... Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.34.9-1) ... Setting up r-cran-httr (1.4.5+dfsg-1) ... Setting up r-cran-hms (1.1.2-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up r-cran-purrr (1.0.1-1) ... Setting up r-cran-blob (1.2.3-1) ... Setting up r-cran-htmltools (0.5.4-1) ... Setting up r-bioc-xvector (0.38.0-1) ... Setting up r-cran-sass (0.4.5+dfsg-1) ... Setting up r-cran-dplyr (1.0.10-1) ... Setting up dh-r (20230121) ... Setting up r-cran-dbplyr (2.3.0+dfsg-1) ... Setting up r-cran-rsqlite (2.2.20-1) ... Setting up r-cran-progress (1.2.2-2) ... Setting up r-bioc-biocfilecache (2.6.1+dfsg-1) ... Setting up r-bioc-genomicranges (1.50.2+dfsg-1) ... Setting up r-cran-httpuv (1.6.9+dfsg-1) ... Setting up r-bioc-biostrings (2.66.0-1) ... Setting up r-bioc-annotationfilter (1.22.0+dfsg-1) ... Setting up r-cran-fontawesome (0.5.0-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-bslib (0.4.2+dfsg-1) ... Setting up r-bioc-rsamtools (2.14.0-1) ... Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ... Setting up r-bioc-keggrest (1.38.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.60.0-1) ... Setting up r-cran-shiny (1.7.4+dfsg-2) ... Setting up r-cran-rmarkdown (2.20+dfsg-1) ... Setting up r-bioc-biomart (2.54.0+dfsg-1) ... Setting up r-bioc-genomicalignments (1.34.0-1) ... Setting up r-cran-crosstalk (1.2.0+dfsg-1) ... Setting up r-bioc-rtracklayer (1.58.0-1) ... Setting up r-bioc-singlecellexperiment (1.20.0+ds-1) ... Setting up r-bioc-genomicfeatures (1.50.4+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.1+dfsg-1) ... Setting up r-bioc-ensembldb (2.22.0+dfsg-1) ... Setting up r-cran-dt (0.27+dfsg-1) ... Setting up r-bioc-interactivedisplaybase (1.36.0+dfsg-1) ... Setting up r-bioc-annotationhub (3.6.0+dfsg-1) ... Setting up r-bioc-experimenthub (2.6.0+ds-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-bioc-scrnaseq-2.12.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-scrnaseq_2.12.0+ds-1_source.changes dpkg-buildpackage: info: source package r-bioc-scrnaseq dpkg-buildpackage: info: source version 2.12.0+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-scrnaseq/ -O--buildsystem=R I: R Package: scRNAseq Version: 2.12.0 I: Building using R version 4.2.2.20221110-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 22 Nov 2022 07:36:36 +0100 mkdir -p /build/r-bioc-scrnaseq-2.12.0\+ds/debian/r-bioc-scrnaseq/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-scrnaseq-2.12.0\+ds/debian/r-bioc-scrnaseq/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 22 Nov 2022 07:36:36 +0100'" * installing *source* package 'scRNAseq' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scRNAseq) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. I: Using r-bioc-singlecellexperiment for Depends:SingleCellExperiment I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biocfilecache for Suggests:BiocFileCache I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-rappdirs for Suggests:rappdirs I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-genomicranges for Imports:GenomicRanges I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment I: Using r-bioc-experimenthub for Imports:ExperimentHub (>= 2.3.4) I: Using r-bioc-annotationhub for Imports:AnnotationHub (>= 3.3.6) I: Using r-bioc-annotationdbi for Imports:AnnotationDbi I: Using r-bioc-ensembldb for Imports:ensembldb I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures I: BioConductor API version: r-api-bioc-3.16 I: Use r-bioc-scrnaseq as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-scrnaseq' in '../r-bioc-scrnaseq_2.12.0+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-scrnaseq_2.12.0+ds-1_i386.buildinfo dpkg-genchanges --build=binary -O../r-bioc-scrnaseq_2.12.0+ds-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/45285 and its subdirectories I: Current time: Wed May 29 19:48:36 -12 2024 I: pbuilder-time-stamp: 1717055316 Fri Apr 28 01:25:36 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Fri Apr 28 01:25:36 UTC 2023 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Fri Apr 28 01:28:06 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. Fri Apr 28 01:28:07 UTC 2023 I: r-bioc-scrnaseq_2.12.0+ds-1_i386.changes: Format: 1.8 Date: Tue, 22 Nov 2022 07:36:36 +0100 Source: r-bioc-scrnaseq Binary: r-bioc-scrnaseq Architecture: all Version: 2.12.0+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-scrnaseq - Collection of Public Single-Cell RNA-Seq Datasets Changes: r-bioc-scrnaseq (2.12.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) Checksums-Sha1: f155ebfc3954bca125afdb104d5b4b4272d36c96 286532 r-bioc-scrnaseq_2.12.0+ds-1_all.deb ec866bcff904424579707b9a3854bd49133f6e1a 14704 r-bioc-scrnaseq_2.12.0+ds-1_i386.buildinfo Checksums-Sha256: 3b5f4057632fb808dec12aecad607fdc57a16553a99f5b2a9a5ca7cebbcb9896 286532 r-bioc-scrnaseq_2.12.0+ds-1_all.deb dab2da2b11c16d44876974000b920e0759202c489d1ff5f8ece496971b02ccbc 14704 r-bioc-scrnaseq_2.12.0+ds-1_i386.buildinfo Files: a330946f26ef06bc723a5141f103f899 286532 gnu-r optional r-bioc-scrnaseq_2.12.0+ds-1_all.deb f1cf9397e9351a08173e8cbe95394e71 14704 gnu-r optional r-bioc-scrnaseq_2.12.0+ds-1_i386.buildinfo Fri Apr 28 01:28:08 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.faUmXtYj/r-bioc-scrnaseq_2.12.0+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.faUmXtYj/r-bioc-scrnaseq_2.12.0+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.faUmXtYj/r-bioc-scrnaseq_2.12.0+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.faUmXtYj/b1/r-bioc-scrnaseq_2.12.0+ds-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.faUmXtYj/b2/r-bioc-scrnaseq_2.12.0+ds-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.538s) 0.538s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Apr 28 01:28:10 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 28 01:28:10 UTC 2023 I: r-bioc-scrnaseq from bookworm built successfully and reproducibly on i386. Fri Apr 28 01:28:11 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Apr 28 01:28:11 UTC 2023 I: Submitting 16K b1/r-bioc-scrnaseq_2.12.0+ds-1_i386.buildinfo.asc Fri Apr 28 01:28:12 UTC 2023 I: Submitting 16K b2/r-bioc-scrnaseq_2.12.0+ds-1_i386.buildinfo.asc Fri Apr 28 01:28:13 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 28 01:28:13 UTC 2023 I: Done submitting .buildinfo files. Fri Apr 28 01:28:13 UTC 2023 I: Removing signed r-bioc-scrnaseq_2.12.0+ds-1_i386.buildinfo.asc files: removed './b1/r-bioc-scrnaseq_2.12.0+ds-1_i386.buildinfo.asc' removed './b2/r-bioc-scrnaseq_2.12.0+ds-1_i386.buildinfo.asc'