Wed Apr 19 10:40:33 UTC 2023 I: starting to build r-bioc-gviz/bookworm/i386 on jenkins on '2023-04-19 10:40' Wed Apr 19 10:40:33 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_9/11242/console.log Wed Apr 19 10:40:33 UTC 2023 I: Downloading source for bookworm/r-bioc-gviz=1.42.1+dfsg-1 --2023-04-19 10:40:33-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-gviz/r-bioc-gviz_1.42.1%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2496 (2.4K) [text/prs.lines.tag] Saving to: ‘r-bioc-gviz_1.42.1+dfsg-1.dsc’ 0K .. 100% 169M=0s 2023-04-19 10:40:33 (169 MB/s) - ‘r-bioc-gviz_1.42.1+dfsg-1.dsc’ saved [2496/2496] Wed Apr 19 10:40:33 UTC 2023 I: r-bioc-gviz_1.42.1+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-bioc-gviz Binary: r-bioc-gviz Architecture: all Version: 1.42.1+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/Gviz/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-gviz Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-gviz.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-xvector, r-bioc-rtracklayer, r-cran-lattice, r-cran-rcolorbrewer, r-bioc-biomart, r-bioc-annotationdbi, r-bioc-biobase, r-bioc-genomicfeatures, r-bioc-ensembldb (>= 2.11.3), r-bioc-bsgenome, r-bioc-biostrings, r-bioc-biovizbase, r-bioc-rsamtools, r-cran-latticeextra, r-cran-matrixstats, r-bioc-genomicalignments, r-bioc-genomeinfodb, r-bioc-biocgenerics, r-cran-digest Package-List: r-bioc-gviz deb gnu-r optional arch=all Checksums-Sha1: 756f1cb66b86584f72824cd0676ea9cad925644c 3818000 r-bioc-gviz_1.42.1+dfsg.orig.tar.xz 994cefb2596996f6ed8b04faaeb7bfdb5f2550e2 7048 r-bioc-gviz_1.42.1+dfsg-1.debian.tar.xz Checksums-Sha256: 358092d4eb925a61231cf36ec3946d8ace2754f10fe93f46f572eb923f4d388b 3818000 r-bioc-gviz_1.42.1+dfsg.orig.tar.xz 07495f91290064ee663cfd4c0af0daff5cd7d76a4ff6719ef2905a15b1b0a792 7048 r-bioc-gviz_1.42.1+dfsg-1.debian.tar.xz Files: dbda88239bb09ea74ce5513ee6aa171a 3818000 r-bioc-gviz_1.42.1+dfsg.orig.tar.xz 4d4cab0ec4224a82a5f23a03aaab0b5a 7048 r-bioc-gviz_1.42.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmP7M9MRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHg+w/9FSyvq6Gy9pQW+spA4Ym+faks1OIYwJuv t/PzvYjPFVvzWYXIi6toXx40Sj2hbD0SELCsY6kBEwfSdra63RuHSM3IZJEKcSKq p8rkEVdmU3AgNg6EtpVx/k8R5DIBuYrsAgCEjpCnFrZIattfoS/KLd1nkW+BZrty Rabsxf8nhb+65Fs1zCCnsgMz//qyHI7T8r5qdTXUxnyUWMouYNkizfAUponhRgoo xuxBXkE21KmB2ZDzW2P8ki3Da6uVEuqineLnj2anP9vwLLShcJQYH2QwdoL8BeYa PR65D0pujms3trnYn3PsDh/aMmudT+8lfVLl+GyqYjoeDNkR1aITTew/2OTOviNN UQND6XMRh+p0TEpMe0h9XyuvSVE0J7i/ROpmeH3+haUSjpBuqGusrmWHOPsU2FVn IqwJzWkpb5MfIP7EHAWeP3Q+JgLLIpvTxcl4sPsgkcXJx2wM1idjc1rLfuz1boah zjK1fDX6SEt0dkw7EzSHqtJ2GiS8i7lcHZrI8vHaBysIxCzCF8bd1GwbwpNJmG39 LDDPYxAf2+hPTKa6czUQi918d4hdGOyHtxu7z5+cgluJkYXhpXK2n/hpGCpKye0+ I6Dib1lH4ZBMUiWWLtL8sZMn7RKA37Ps4myNE9S81dg8xZwKMskaW32QLsJMs7E/ F9+hOjHVYuA= =gQaz -----END PGP SIGNATURE----- Wed Apr 19 10:40:33 UTC 2023 I: Checking whether the package is not for us Wed Apr 19 10:40:33 UTC 2023 I: Starting 1st build on remote node ionos2-i386.debian.net. Wed Apr 19 10:40:33 UTC 2023 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Wed Apr 19 10:44:04 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. W: cgroups are not available on the host, not using them. unshare: unshare failed: Cannot allocate memory W: pbuilder: unshare CLONE_NEWNET not available I: pbuilder: network access is available during build! I: Current time: Tue Apr 18 22:40:34 -12 2023 I: pbuilder-time-stamp: 1681900834 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-gviz_1.42.1+dfsg-1.dsc] I: copying [./r-bioc-gviz_1.42.1+dfsg.orig.tar.xz] I: copying [./r-bioc-gviz_1.42.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Feb 25 22:26:27 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-gviz_1.42.1+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-gviz in r-bioc-gviz-1.42.1+dfsg dpkg-source: info: unpacking r-bioc-gviz_1.42.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-gviz_1.42.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_tests.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1952/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1952' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6mh7Ub3x/pbuilderrc_KyjQ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6mh7Ub3x/b1 --logfile b1/build.log r-bioc-gviz_1.42.1+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Feb 12 08:21 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 08:21 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1952/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-xvector, r-bioc-rtracklayer, r-cran-lattice, r-cran-rcolorbrewer, r-bioc-biomart, r-bioc-annotationdbi, r-bioc-biobase, r-bioc-genomicfeatures, r-bioc-ensembldb (>= 2.11.3), r-bioc-bsgenome, r-bioc-biostrings, r-bioc-biovizbase, r-bioc-rsamtools, r-cran-latticeextra, r-cran-matrixstats, r-bioc-genomicalignments, r-bioc-genomeinfodb, r-bioc-biocgenerics, r-cran-digest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer; however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-lattice; however: Package r-cran-lattice is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biomart; however: Package r-bioc-biomart is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotationdbi; however: Package r-bioc-annotationdbi is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicfeatures; however: Package r-bioc-genomicfeatures is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-ensembldb (>= 2.11.3); however: Package r-bioc-ensembldb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-bsgenome; however: Package r-bioc-bsgenome is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biovizbase; however: Package r-bioc-biovizbase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools; however: Package r-bioc-rsamtools is not installed. pbuilder-satisfydepends-dummy depends on r-cran-latticeextra; however: Package r-cran-latticeextra is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixstats; however: Package r-cran-matrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicalignments; however: Package r-bioc-genomicalignments is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb; however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-cran-digest; however: Package r-cran-digest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblua5.3-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} libyaml-0-2{a} m4{a} man-db{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-annotationdbi{a} r-bioc-annotationfilter{a} r-bioc-biobase{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biomart{a} r-bioc-biostrings{a} r-bioc-biovizbase{a} r-bioc-bsgenome{a} r-bioc-delayedarray{a} r-bioc-ensembldb{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicfeatures{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-matrixgenerics{a} r-bioc-protgenerics{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4vectors{a} r-bioc-summarizedexperiment{a} r-bioc-variantannotation{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-acepack{a} r-cran-askpass{a} r-cran-assertthat{a} r-cran-backports{a} r-cran-base64enc{a} r-cran-bh{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-checkmate{a} r-cran-chron{a} r-cran-cli{a} r-cran-cluster{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-data.table{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-deldir{a} r-cran-dichromat{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-fontawesome{a} r-cran-foreign{a} r-cran-formatr{a} r-cran-formula{a} r-cran-fs{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-highr{a} r-cran-hmisc{a} r-cran-hms{a} r-cran-htmltable{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-httr{a} r-cran-interp{a} r-cran-isoband{a} r-cran-jpeg{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-later{a} r-cran-lattice{a} r-cran-latticeextra{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nnet{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-promises{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-rcurl{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rpart{a} r-cran-rsqlite{a} r-cran-rstudioapi{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-snow{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xml{a} r-cran-xml2{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-covr r-cran-dbitest r-cran-decor r-cran-dygraphs r-cran-fastmatch r-cran-formattable r-cran-future r-cran-hexbin r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-maptools r-cran-markdown r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-pkgload r-cran-quantreg r-cran-ragg r-cran-rmysql r-cran-rpostgresql r-cran-rsconnect r-cran-rsvg r-cran-runit r-cran-sf r-cran-sodium r-cran-sp r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tikzdevice r-cran-tufte r-cran-vdiffr r-cran-waldo r-cran-webutils r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 363 newly installed, 0 to remove and 0 not upgraded. Need to get 314 MB of archives. After unpacking 1033 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.8-1 [1412 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 26 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 zip i386 3.0-13 [236 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 unzip i386 6.0-28 [166 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libpaper1 i386 1.1.29 [12.7 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libpaper-utils i386 1.1.29 [8972 B] Get: 40 http://deb.debian.org/debian bookworm/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-4 [410 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-8 [419 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libthai-data all 0.1.29-1 [176 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libdatrie1 i386 0.2.13-2+b1 [45.0 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libthai0 i386 0.1.29-1 [58.6 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libpango-1.0-0 i386 1.50.12+ds-1 [220 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libpangoft2-1.0-0 i386 1.50.12+ds-1 [50.5 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libpangocairo-1.0-0 i386 1.50.12+ds-1 [35.4 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libtcl8.6 i386 8.6.13+dfsg-2 [1095 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libxft2 i386 2.3.6-1 [62.8 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libtk8.6 i386 8.6.13-2 [824 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 r-base-core i386 4.2.2.20221110-2 [26.1 MB] Get: 98 http://deb.debian.org/debian bookworm/main i386 libgfortran-12-dev i386 12.2.0-14 [761 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 gfortran-12 i386 12.2.0-14 [10.5 MB] Get: 100 http://deb.debian.org/debian bookworm/main i386 gfortran i386 4:12.2.0-3 [1432 B] Get: 101 http://deb.debian.org/debian bookworm/main i386 libblas-dev i386 3.11.0-2 [151 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 liblapack-dev i386 3.11.0-2 [4187 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 libncurses6 i386 6.4-2 [111 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libncurses-dev i386 6.4-2 [379 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libncurses5-dev i386 6.4-2 [932 B] Get: 106 http://deb.debian.org/debian bookworm/main i386 libreadline-dev i386 8.2-1.3 [164 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2 [304 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 libjpeg-dev i386 1:2.1.5-2 [71.8 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libpcre2-16-0 i386 10.42-1 [243 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 libpcre2-32-0 i386 10.42-1 [232 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 libpcre2-posix3 i386 10.42-1 [55.4 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 libpcre2-dev i386 10.42-1 [761 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 libpcre3 i386 2:8.39-15 [340 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 libpcre16-3 i386 2:8.39-15 [258 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 libpcre32-3 i386 2:8.39-15 [248 kB] Get: 116 http://deb.debian.org/debian bookworm/main i386 libpcrecpp0v5 i386 2:8.39-15 [144 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libpcre3-dev i386 2:8.39-15 [669 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 libpng-dev i386 1.6.39-2 [367 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 libbz2-dev i386 1.0.8-5+b1 [31.5 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 liblzma-dev i386 5.4.1-0.2 [272 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libxmuu1 i386 2:1.1.3-3 [24.1 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 xauth i386 1:1.1.2-1 [36.7 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 libpkgconf3 i386 1.8.1-1 [38.3 kB] Get: 127 http://deb.debian.org/debian bookworm/main i386 pkgconf-bin i386 1.8.1-1 [29.8 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 pkgconf i386 1.8.1-1 [25.9 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 pkg-config i386 1.8.1-1 [13.7 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 r-base-dev all 4.2.2.20221110-2 [4492 B] Get: 131 http://deb.debian.org/debian bookworm/main i386 libfile-which-perl all 1.27-2 [15.1 kB] Get: 132 http://deb.debian.org/debian bookworm/main i386 libswitch-perl all 2.17-3 [20.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main i386 libclone-perl i386 0.46-1 [13.8 kB] Get: 134 http://deb.debian.org/debian bookworm/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 libhttp-date-perl all 6.05-2 [10.5 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 138 http://deb.debian.org/debian bookworm/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main i386 libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 140 http://deb.debian.org/debian bookworm/main i386 liburi-perl all 5.17-1 [90.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main i386 libhttp-message-perl all 6.44-1 [81.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main i386 libparams-util-perl i386 1.102-2+b1 [25.0 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 libsub-install-perl all 0.929-1 [10.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main i386 libdata-optlist-perl all 0.113-1 [10.6 kB] Get: 145 http://deb.debian.org/debian bookworm/main i386 libb-hooks-op-check-perl i386 0.22-2+b1 [10.6 kB] Get: 146 http://deb.debian.org/debian bookworm/main i386 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main i386 libdevel-callchecker-perl i386 0.008-2 [15.8 kB] Get: 148 http://deb.debian.org/debian bookworm/main i386 libparams-classify-perl i386 0.015-2+b1 [23.7 kB] Get: 149 http://deb.debian.org/debian bookworm/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 150 http://deb.debian.org/debian bookworm/main i386 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 151 http://deb.debian.org/debian bookworm/main i386 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 152 http://deb.debian.org/debian bookworm/main i386 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 153 http://deb.debian.org/debian bookworm/main i386 libclass-load-perl all 0.25-2 [15.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main i386 libclass-load-xs-perl i386 0.10-2+b1 [14.1 kB] Get: 155 http://deb.debian.org/debian bookworm/main i386 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 156 http://deb.debian.org/debian bookworm/main i386 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 157 http://deb.debian.org/debian bookworm/main i386 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 158 http://deb.debian.org/debian bookworm/main i386 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 159 http://deb.debian.org/debian bookworm/main i386 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 160 http://deb.debian.org/debian bookworm/main i386 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 161 http://deb.debian.org/debian bookworm/main i386 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 162 http://deb.debian.org/debian bookworm/main i386 libsub-exporter-perl all 0.989-1 [50.5 kB] Get: 163 http://deb.debian.org/debian bookworm/main i386 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 164 http://deb.debian.org/debian bookworm/main i386 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 165 http://deb.debian.org/debian bookworm/main i386 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 166 http://deb.debian.org/debian bookworm/main i386 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 167 http://deb.debian.org/debian bookworm/main i386 libpackage-stash-xs-perl i386 0.30-1+b1 [20.2 kB] Get: 168 http://deb.debian.org/debian bookworm/main i386 libmoose-perl i386 2.2203-1 [795 kB] Get: 169 http://deb.debian.org/debian bookworm/main i386 libvariable-magic-perl i386 0.63-1+b1 [44.5 kB] Get: 170 http://deb.debian.org/debian bookworm/main i386 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get: 171 http://deb.debian.org/debian bookworm/main i386 libsub-identify-perl i386 0.14-3 [10.9 kB] Get: 172 http://deb.debian.org/debian bookworm/main i386 libsub-name-perl i386 0.26-2+b1 [12.7 kB] Get: 173 http://deb.debian.org/debian bookworm/main i386 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 174 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-8 [412 kB] Get: 175 http://deb.debian.org/debian bookworm/main i386 libwww-curl-perl i386 4.17-10 [62.0 kB] Get: 176 http://deb.debian.org/debian bookworm/main i386 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 177 http://deb.debian.org/debian bookworm/main i386 dh-r all 20230121 [37.9 kB] Get: 178 http://deb.debian.org/debian bookworm/main i386 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 179 http://deb.debian.org/debian bookworm/main i386 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 180 http://deb.debian.org/debian bookworm/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 181 http://deb.debian.org/debian bookworm/main i386 javascript-common all 11+nmu1 [6260 B] Get: 182 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB] Get: 183 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 184 http://deb.debian.org/debian bookworm/main i386 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 185 http://deb.debian.org/debian bookworm/main i386 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 186 http://deb.debian.org/debian bookworm/main i386 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 187 http://deb.debian.org/debian bookworm/main i386 libjs-d3 all 3.5.17-4 [132 kB] Get: 188 http://deb.debian.org/debian bookworm/main i386 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 189 http://deb.debian.org/debian bookworm/main i386 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 190 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 191 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 192 http://deb.debian.org/debian bookworm/main i386 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 193 http://deb.debian.org/debian bookworm/main i386 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 194 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 195 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 196 http://deb.debian.org/debian bookworm/main i386 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 197 http://deb.debian.org/debian bookworm/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 198 http://deb.debian.org/debian bookworm/main i386 libjs-modernizr all 2.6.2+ds1-5 [47.1 kB] Get: 199 http://deb.debian.org/debian bookworm/main i386 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 200 http://deb.debian.org/debian bookworm/main i386 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 201 http://deb.debian.org/debian bookworm/main i386 liblua5.3-0 i386 5.3.6-2 [144 kB] Get: 202 http://deb.debian.org/debian bookworm/main i386 libuv1 i386 1.44.2-1 [147 kB] Get: 203 http://deb.debian.org/debian bookworm/main i386 libyaml-0-2 i386 0.2.5-1 [55.9 kB] Get: 204 http://deb.debian.org/debian bookworm/main i386 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 205 http://deb.debian.org/debian bookworm/main i386 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 206 http://deb.debian.org/debian bookworm/main i386 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 207 http://deb.debian.org/debian bookworm/main i386 pandoc-data all 2.17.1.1-1.1 [417 kB] Get: 208 http://deb.debian.org/debian bookworm/main i386 pandoc i386 2.17.1.1-1.1 [27.5 MB] Get: 209 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get: 210 http://deb.debian.org/debian bookworm/main i386 r-bioc-biobase i386 2.58.0-2 [2113 kB] Get: 211 http://deb.debian.org/debian bookworm/main i386 r-bioc-s4vectors i386 0.36.1-1 [2033 kB] Get: 212 http://deb.debian.org/debian bookworm/main i386 r-bioc-iranges i386 2.32.0-1 [2197 kB] Get: 213 http://deb.debian.org/debian bookworm/main i386 r-cran-dbi all 1.1.3-1 [687 kB] Get: 214 http://deb.debian.org/debian bookworm/main i386 r-cran-bit i386 4.0.5-1 [1070 kB] Get: 215 http://deb.debian.org/debian bookworm/main i386 r-cran-bit64 i386 4.0.5-1 [470 kB] Get: 216 http://deb.debian.org/debian bookworm/main i386 r-cran-rlang i386 1.0.6-1 [1634 kB] Get: 217 http://deb.debian.org/debian bookworm/main i386 r-cran-cli i386 3.6.0-1 [1288 kB] Get: 218 http://deb.debian.org/debian bookworm/main i386 r-cran-glue i386 1.6.2-1 [152 kB] Get: 219 http://deb.debian.org/debian bookworm/main i386 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get: 220 http://deb.debian.org/debian bookworm/main i386 r-cran-vctrs i386 0.5.2-1 [1388 kB] Get: 221 http://deb.debian.org/debian bookworm/main i386 r-cran-blob all 1.2.3-1 [49.5 kB] Get: 222 http://deb.debian.org/debian bookworm/main i386 r-cran-fastmap i386 1.1.1-1 [70.3 kB] Get: 223 http://deb.debian.org/debian bookworm/main i386 r-cran-cachem i386 1.0.7-1 [71.8 kB] Get: 224 http://deb.debian.org/debian bookworm/main i386 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 225 http://deb.debian.org/debian bookworm/main i386 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 226 http://deb.debian.org/debian bookworm/main i386 r-cran-littler i386 0.3.17-1 [93.1 kB] Get: 227 http://deb.debian.org/debian bookworm/main i386 r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get: 228 http://deb.debian.org/debian bookworm/main i386 r-cran-rcpp i386 1.0.10-1 [2071 kB] Get: 229 http://deb.debian.org/debian bookworm/main i386 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 230 http://deb.debian.org/debian bookworm/main i386 r-cran-rsqlite i386 2.2.20-1 [1161 kB] Get: 231 http://deb.debian.org/debian bookworm/main i386 r-cran-curl i386 5.0.0+dfsg-1 [174 kB] Get: 232 http://deb.debian.org/debian bookworm/main i386 r-cran-jsonlite i386 1.8.4+dfsg-1 [445 kB] Get: 233 http://deb.debian.org/debian bookworm/main i386 r-cran-mime i386 0.12-1+b1 [36.1 kB] Get: 234 http://deb.debian.org/debian bookworm/main i386 r-cran-sys i386 3.4.1-1 [43.1 kB] Get: 235 http://deb.debian.org/debian bookworm/main i386 r-cran-askpass i386 1.1-2 [22.3 kB] Get: 236 http://deb.debian.org/debian bookworm/main i386 r-cran-openssl i386 2.0.5+dfsg-1 [394 kB] Get: 237 http://deb.debian.org/debian bookworm/main i386 r-cran-r6 all 2.5.1-1 [105 kB] Get: 238 http://deb.debian.org/debian bookworm/main i386 r-cran-httr all 1.4.5+dfsg-1 [465 kB] Get: 239 http://deb.debian.org/debian bookworm/main i386 r-cran-png i386 0.1-8-1 [41.7 kB] Get: 240 http://deb.debian.org/debian bookworm/main i386 r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B] Get: 241 http://deb.debian.org/debian bookworm/main i386 r-bioc-xvector i386 0.38.0-1 [621 kB] Get: 242 http://deb.debian.org/debian bookworm/main i386 r-cran-bitops i386 1.0-7-1 [30.5 kB] Get: 243 http://deb.debian.org/debian bookworm/main i386 r-cran-rcurl i386 1.98-1.10+dfsg-1 [785 kB] Get: 244 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB] Get: 245 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomeinfodb all 1.34.9-1 [3938 kB] Get: 246 http://deb.debian.org/debian bookworm/main i386 r-cran-crayon all 1.5.2-1 [165 kB] Get: 247 http://deb.debian.org/debian bookworm/main i386 r-bioc-biostrings i386 2.66.0-1 [13.8 MB] Get: 248 http://deb.debian.org/debian bookworm/main i386 r-bioc-keggrest all 1.38.0+dfsg-1 [179 kB] Get: 249 http://deb.debian.org/debian bookworm/main i386 r-bioc-annotationdbi all 1.60.0-1 [4696 kB] Get: 250 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomicranges i386 1.50.2+dfsg-1 [1796 kB] Get: 251 http://deb.debian.org/debian bookworm/main i386 r-cran-lazyeval i386 0.2.2-1+b1 [142 kB] Get: 252 http://deb.debian.org/debian bookworm/main i386 r-bioc-annotationfilter all 1.22.0+dfsg-1 [234 kB] Get: 253 http://deb.debian.org/debian bookworm/main i386 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get: 254 http://deb.debian.org/debian bookworm/main i386 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 255 http://deb.debian.org/debian bookworm/main i386 r-cran-magrittr i386 2.0.3-1 [201 kB] Get: 256 http://deb.debian.org/debian bookworm/main i386 r-cran-fansi i386 1.0.4-1 [624 kB] Get: 257 http://deb.debian.org/debian bookworm/main i386 r-cran-utf8 i386 1.2.3-1 [135 kB] Get: 258 http://deb.debian.org/debian bookworm/main i386 r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get: 259 http://deb.debian.org/debian bookworm/main i386 r-cran-tibble i386 3.1.8+dfsg-1 [513 kB] Get: 260 http://deb.debian.org/debian bookworm/main i386 r-cran-withr all 2.5.0-1 [236 kB] Get: 261 http://deb.debian.org/debian bookworm/main i386 r-cran-tidyselect i386 1.2.0+dfsg-1 [219 kB] Get: 262 http://deb.debian.org/debian bookworm/main i386 r-cran-dplyr i386 1.0.10-1 [1230 kB] Get: 263 http://deb.debian.org/debian bookworm/main i386 r-cran-purrr i386 1.0.1-1 [508 kB] Get: 264 http://deb.debian.org/debian bookworm/main i386 r-cran-dbplyr all 2.3.0+dfsg-1 [1055 kB] Get: 265 http://deb.debian.org/debian bookworm/main i386 r-cran-rappdirs i386 0.3.3-1 [47.5 kB] Get: 266 http://deb.debian.org/debian bookworm/main i386 r-cran-filelock i386 1.0.2-2 [24.9 kB] Get: 267 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocfilecache all 2.6.1+dfsg-1 [296 kB] Get: 268 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocio all 1.8.0+dfsg-1 [201 kB] Get: 269 http://deb.debian.org/debian bookworm/main i386 r-cran-formatr all 1.14-1 [152 kB] Get: 270 http://deb.debian.org/debian bookworm/main i386 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 271 http://deb.debian.org/debian bookworm/main i386 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 272 http://deb.debian.org/debian bookworm/main i386 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 273 http://deb.debian.org/debian bookworm/main i386 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 274 http://deb.debian.org/debian bookworm/main i386 r-cran-codetools all 0.2-19-1 [90.9 kB] Get: 275 http://deb.debian.org/debian bookworm/main i386 r-cran-bh all 1.74.0-2 [5524 B] Get: 276 http://deb.debian.org/debian bookworm/main i386 r-cran-cpp11 all 0.4.3-1 [223 kB] Get: 277 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocparallel i386 1.32.5-1 [1338 kB] Get: 278 http://deb.debian.org/debian bookworm/main i386 r-cran-xml i386 3.99-0.13-1 [1721 kB] Get: 279 http://deb.debian.org/debian bookworm/main i386 r-cran-ellipsis i386 0.3.2-2 [35.3 kB] Get: 280 http://deb.debian.org/debian bookworm/main i386 r-cran-hms all 1.1.2-1 [104 kB] Get: 281 http://deb.debian.org/debian bookworm/main i386 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get: 282 http://deb.debian.org/debian bookworm/main i386 r-cran-progress all 1.2.2-2 [88.9 kB] Get: 283 http://deb.debian.org/debian bookworm/main i386 r-cran-stringi i386 1.7.12-1 [872 kB] Get: 284 http://deb.debian.org/debian bookworm/main i386 r-cran-stringr all 1.5.0-1 [295 kB] Get: 285 http://deb.debian.org/debian bookworm/main i386 r-cran-digest i386 0.6.31-1 [179 kB] Get: 286 http://deb.debian.org/debian bookworm/main i386 r-cran-xml2 i386 1.3.3-1+b1 [282 kB] Get: 287 http://deb.debian.org/debian bookworm/main i386 r-bioc-biomart all 2.54.0+dfsg-1 [442 kB] Get: 288 http://deb.debian.org/debian bookworm/main i386 r-cran-farver i386 2.1.1-1 [1404 kB] Get: 289 http://deb.debian.org/debian bookworm/main i386 r-cran-labeling all 0.4.2-1 [62.7 kB] Get: 290 http://deb.debian.org/debian bookworm/main i386 r-cran-colorspace i386 2.1-0+dfsg-1 [1695 kB] Get: 291 http://deb.debian.org/debian bookworm/main i386 r-cran-munsell all 0.5.0-2 [236 kB] Get: 292 http://deb.debian.org/debian bookworm/main i386 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 293 http://deb.debian.org/debian bookworm/main i386 r-cran-viridislite all 0.4.1-1 [1299 kB] Get: 294 http://deb.debian.org/debian bookworm/main i386 r-cran-scales all 1.2.1-1 [614 kB] Get: 295 http://deb.debian.org/debian bookworm/main i386 r-cran-lattice i386 0.20-45-3 [1172 kB] Get: 296 http://deb.debian.org/debian bookworm/main i386 r-cran-matrix i386 1.5-3-1 [3821 kB] Get: 297 http://deb.debian.org/debian bookworm/main i386 r-cran-survival i386 3.5-3-1 [5922 kB] Get: 298 http://deb.debian.org/debian bookworm/main i386 r-cran-formula all 1.2-4-1 [175 kB] Get: 299 http://deb.debian.org/debian bookworm/main i386 r-cran-gtable all 0.3.1+dfsg-1 [165 kB] Get: 300 http://deb.debian.org/debian bookworm/main i386 r-cran-isoband i386 0.2.7-1 [1617 kB] Get: 301 http://deb.debian.org/debian bookworm/main i386 r-cran-mass i386 7.3-58.2-1 [1123 kB] Get: 302 http://deb.debian.org/debian bookworm/main i386 r-cran-nlme i386 3.1.162-1 [2250 kB] Get: 303 http://deb.debian.org/debian bookworm/main i386 r-cran-mgcv i386 1.8-41-1 [3167 kB] Get: 304 http://deb.debian.org/debian bookworm/main i386 r-cran-ggplot2 all 3.4.1+dfsg-1 [3333 kB] Get: 305 http://deb.debian.org/debian bookworm/main i386 r-cran-jpeg i386 0.1-10-1 [31.5 kB] Get: 306 http://deb.debian.org/debian bookworm/main i386 r-cran-deldir i386 1.0-6-1+b1 [278 kB] Get: 307 http://deb.debian.org/debian bookworm/main i386 r-cran-rcppeigen i386 0.3.3.9.3-1 [1185 kB] Get: 308 http://deb.debian.org/debian bookworm/main i386 r-cran-interp i386 1.1-3-1 [1008 kB] Get: 309 http://deb.debian.org/debian bookworm/main i386 r-cran-latticeextra all 0.6-30-1 [2194 kB] Get: 310 http://deb.debian.org/debian bookworm/main i386 r-cran-cluster i386 2.1.4-1 [566 kB] Get: 311 http://deb.debian.org/debian bookworm/main i386 r-cran-rpart i386 4.1.19-1 [918 kB] Get: 312 http://deb.debian.org/debian bookworm/main i386 r-cran-nnet i386 7.3-18-1 [112 kB] Get: 313 http://deb.debian.org/debian bookworm/main i386 r-cran-foreign i386 0.8.84-1 [254 kB] Get: 314 http://deb.debian.org/debian bookworm/main i386 r-cran-gridextra all 2.3-3 [1024 kB] Get: 315 http://deb.debian.org/debian bookworm/main i386 r-cran-data.table i386 1.14.8+dfsg-1 [1703 kB] Get: 316 http://deb.debian.org/debian bookworm/main i386 r-cran-evaluate all 0.20-1 [85.9 kB] Get: 317 http://deb.debian.org/debian bookworm/main i386 r-cran-xfun i386 0.37+dfsg-1 [395 kB] Get: 318 http://deb.debian.org/debian bookworm/main i386 r-cran-highr all 0.10+dfsg-1 [38.1 kB] Get: 319 http://deb.debian.org/debian bookworm/main i386 r-cran-yaml i386 2.3.7-1 [108 kB] Get: 320 http://deb.debian.org/debian bookworm/main i386 r-cran-knitr all 1.42+dfsg-1 [901 kB] Get: 321 http://deb.debian.org/debian bookworm/main i386 r-cran-backports i386 1.4.1-1 [101 kB] Get: 322 http://deb.debian.org/debian bookworm/main i386 r-cran-checkmate i386 2.1.0-1 [616 kB] Get: 323 http://deb.debian.org/debian bookworm/main i386 r-cran-base64enc i386 0.1-3-3 [28.4 kB] Get: 324 http://deb.debian.org/debian bookworm/main i386 r-cran-htmltools i386 0.5.4-1 [365 kB] Get: 325 http://deb.debian.org/debian bookworm/main i386 r-cran-fs i386 1.6.1+dfsg-1 [228 kB] Get: 326 http://deb.debian.org/debian bookworm/main i386 r-cran-sass i386 0.4.5+dfsg-1 [990 kB] Get: 327 http://deb.debian.org/debian bookworm/main i386 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 328 http://deb.debian.org/debian bookworm/main i386 r-cran-bslib all 0.4.2+dfsg-1 [3773 kB] Get: 329 http://deb.debian.org/debian bookworm/main i386 r-cran-tinytex all 0.44-1 [138 kB] Get: 330 http://deb.debian.org/debian bookworm/main i386 r-cran-later i386 1.3.0+dfsg-1+b1 [120 kB] Get: 331 http://deb.debian.org/debian bookworm/main i386 r-cran-promises i386 1.2.0.1+dfsg-1 [275 kB] Get: 332 http://deb.debian.org/debian bookworm/main i386 r-cran-httpuv i386 1.6.9+dfsg-1 [491 kB] Get: 333 http://deb.debian.org/debian bookworm/main i386 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 334 http://deb.debian.org/debian bookworm/main i386 r-cran-fontawesome all 0.5.0-1 [1304 kB] Get: 335 http://deb.debian.org/debian bookworm/main i386 r-cran-sourcetools i386 0.1.7-1-1 [47.1 kB] Get: 336 http://deb.debian.org/debian bookworm/main i386 r-cran-commonmark i386 1.8.1-1 [120 kB] Get: 337 http://deb.debian.org/debian bookworm/main i386 r-cran-shiny all 1.7.4+dfsg-2 [2732 kB] Get: 338 http://deb.debian.org/debian bookworm/main i386 r-cran-rmarkdown all 2.20+dfsg-1 [2265 kB] Get: 339 http://deb.debian.org/debian bookworm/main i386 r-cran-htmlwidgets all 1.6.1+dfsg-1 [120 kB] Get: 340 http://deb.debian.org/debian bookworm/main i386 r-cran-rstudioapi all 0.14-1 [281 kB] Get: 341 http://deb.debian.org/debian bookworm/main i386 r-cran-tidyr i386 1.3.0-1 [1184 kB] Get: 342 http://deb.debian.org/debian bookworm/main i386 r-cran-htmltable all 2.4.1-1 [386 kB] Get: 343 http://deb.debian.org/debian bookworm/main i386 r-cran-viridis all 0.6.2-1 [2976 kB] Get: 344 http://deb.debian.org/debian bookworm/main i386 r-cran-chron i386 2.3-59-1 [194 kB] Get: 345 http://deb.debian.org/debian bookworm/main i386 r-cran-acepack i386 1.4.1-2+b5 [59.2 kB] Get: 346 http://deb.debian.org/debian bookworm/main i386 r-cran-hmisc i386 4.8-0-1 [3240 kB] Get: 347 http://deb.debian.org/debian bookworm/main i386 r-cran-dichromat all 1:2.0-0.1-1 [149 kB] Get: 348 http://deb.debian.org/debian bookworm/main i386 r-cran-matrixstats i386 0.63.0-1 [466 kB] Get: 349 http://deb.debian.org/debian bookworm/main i386 r-bioc-matrixgenerics all 1.10.0-1 [302 kB] Get: 350 http://deb.debian.org/debian bookworm/main i386 r-bioc-delayedarray i386 0.24.0+dfsg-1 [1939 kB] Get: 351 http://deb.debian.org/debian bookworm/main i386 r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB] Get: 352 http://deb.debian.org/debian bookworm/main i386 r-bioc-rhtslib i386 2.0.0+dfsg-1 [1339 kB] Get: 353 http://deb.debian.org/debian bookworm/main i386 r-bioc-rsamtools i386 2.14.0-1 [3802 kB] Get: 354 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomicalignments i386 1.34.0-1 [2074 kB] Get: 355 http://deb.debian.org/debian bookworm/main i386 r-cran-rjson i386 0.2.21-1 [140 kB] Get: 356 http://deb.debian.org/debian bookworm/main i386 r-cran-restfulr i386 0.0.15-1 [382 kB] Get: 357 http://deb.debian.org/debian bookworm/main i386 r-bioc-rtracklayer i386 1.58.0-1 [5125 kB] Get: 358 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomicfeatures all 1.50.4+dfsg-1 [1676 kB] Get: 359 http://deb.debian.org/debian bookworm/main i386 r-bioc-bsgenome all 1.66.3-1 [6997 kB] Get: 360 http://deb.debian.org/debian bookworm/main i386 r-bioc-variantannotation i386 1.44.1-1 [3683 kB] Get: 361 http://deb.debian.org/debian bookworm/main i386 r-bioc-protgenerics all 1.30.0-1 [215 kB] Get: 362 http://deb.debian.org/debian bookworm/main i386 r-bioc-ensembldb all 2.22.0+dfsg-1 [1484 kB] Get: 363 http://deb.debian.org/debian bookworm/main i386 r-bioc-biovizbase i386 1.46.0-1 [2662 kB] Fetched 314 MB in 10s (32.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.8-1_i386.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../005-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../019-dctrl-tools_2.24-3_i386.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../024-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../027-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../029-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../030-libxml2_2.9.14+dfsg-1.1+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package zip. Preparing to unpack .../035-zip_3.0-13_i386.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../036-unzip_6.0-28_i386.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:i386. Preparing to unpack .../037-libpaper1_1.1.29_i386.deb ... Unpacking libpaper1:i386 (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../038-libpaper-utils_1.1.29_i386.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../040-libblas3_3.11.0-2_i386.deb ... Unpacking libblas3:i386 (3.11.0-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../041-libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../042-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../043-libpng16-16_1.6.39-2_i386.deb ... Unpacking libpng16-16:i386 (1.6.39-2) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../044-libfreetype6_2.12.1+dfsg-4_i386.deb ... Unpacking libfreetype6:i386 (2.12.1+dfsg-4) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../045-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../046-fontconfig-config_2.14.1-4_i386.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../047-libfontconfig1_2.14.1-4_i386.deb ... Unpacking libfontconfig1:i386 (2.14.1-4) ... Selecting previously unselected package libpixman-1-0:i386. Preparing to unpack .../048-libpixman-1-0_0.42.2-1_i386.deb ... Unpacking libpixman-1-0:i386 (0.42.2-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../049-libxau6_1%3a1.0.9-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../050-libbsd0_0.11.7-2_i386.deb ... Unpacking libbsd0:i386 (0.11.7-2) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../051-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../052-libxcb1_1.15-1_i386.deb ... Unpacking libxcb1:i386 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../053-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../054-libx11-6_2%3a1.8.4-2_i386.deb ... Unpacking libx11-6:i386 (2:1.8.4-2) ... Selecting previously unselected package libxcb-render0:i386. Preparing to unpack .../055-libxcb-render0_1.15-1_i386.deb ... Unpacking libxcb-render0:i386 (1.15-1) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../056-libxcb-shm0_1.15-1_i386.deb ... Unpacking libxcb-shm0:i386 (1.15-1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../057-libxext6_2%3a1.3.4-1+b1_i386.deb ... Unpacking libxext6:i386 (2:1.3.4-1+b1) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../058-libxrender1_1%3a0.9.10-1.1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:i386. Preparing to unpack .../059-libcairo2_1.16.0-7_i386.deb ... Unpacking libcairo2:i386 (1.16.0-7) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../060-libsasl2-modules-db_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../061-libsasl2-2_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../062-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../063-libnghttp2-14_1.52.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.52.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../064-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../065-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../066-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../067-libcurl4_7.88.1-8_i386.deb ... Unpacking libcurl4:i386 (7.88.1-8) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../068-libglib2.0-0_2.74.6-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.74.6-2) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../069-libjpeg62-turbo_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-2) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../070-libgfortran5_12.2.0-14_i386.deb ... Unpacking libgfortran5:i386 (12.2.0-14) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../071-liblapack3_3.11.0-2_i386.deb ... Unpacking liblapack3:i386 (3.11.0-2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../072-fontconfig_2.14.1-4_i386.deb ... Unpacking fontconfig (2.14.1-4) ... Selecting previously unselected package libfribidi0:i386. Preparing to unpack .../073-libfribidi0_1.0.8-2.1_i386.deb ... Unpacking libfribidi0:i386 (1.0.8-2.1) ... Selecting previously unselected package libgraphite2-3:i386. Preparing to unpack .../074-libgraphite2-3_1.3.14-1_i386.deb ... Unpacking libgraphite2-3:i386 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:i386. Preparing to unpack .../075-libharfbuzz0b_6.0.0+dfsg-3_i386.deb ... 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Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.17-1) ... Setting up libblas-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libbz2-dev:i386 (1.0.8-5+b1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpcrecpp0v5:i386 (2:8.39-15) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up r-cran-bh (1.74.0-2) ... Setting up libice6:i386 (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libncurses-dev:i386 (6.4-2) ... Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libpcre2-dev:i386 (10.42-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up libpcre3-dev:i386 (2:8.39-15) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libpng-dev:i386 (1.6.39-2) ... Setting up libjpeg-dev:i386 (1:2.1.5-2) ... Setting up libgfortran-12-dev:i386 (12.2.0-14) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:i386 (8.2-1.3) ... Setting up libdevel-callchecker-perl:i386 (0.008-2) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up pkgconf:i386 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:i386 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up gfortran-12 (12.2.0-14) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (2.17.1.1-1.1) ... Setting up libfreetype6:i386 (2.12.1+dfsg-4) ... Setting up liblapack-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.113-1) ... Setting up pkg-config:i386 (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libncurses5-dev:i386 (6.4-2) ... Setting up libcurl4:i386 (7.88.1-8) ... Setting up libx11-6:i386 (2:1.8.4-2) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up libfontconfig1:i386 (2.14.1-4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libxmuu1:i386 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:i386 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:i386 (0.015-2+b1) ... Setting up libpango-1.0-0:i386 (1.50.12+ds-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:i386 (7.88.1-8) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:i386 (1.16.0-7) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:i386 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:i386 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:i386 (1.50.12+ds-1) ... Setting up libxft2:i386 (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:i386 (8.6.13-2) ... Setting up libwww-curl-perl:i386 (4.17-10) ... Setting up debhelper (13.11.4) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.2.2.20221110-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-gtable (0.3.1+dfsg-1) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-sourcetools (0.1.7-1-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-nlme (3.1.162-1) ... Setting up r-cran-farver (2.1.1-1) ... Setting up r-cran-formatr (1.14-1) ... Setting up r-cran-formula (1.2-4-1) ... Setting up r-cran-xml (3.99-0.13-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.1-1) ... Setting up r-cran-cluster (2.1.4-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up r-cran-nnet (7.3-18-1) ... Setting up libclass-load-xs-perl (0.10-2+b1) ... Setting up r-cran-lazyeval (0.2.2-1+b1) ... Setting up r-cran-commonmark (1.8.1-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up r-cran-jpeg (0.1-10-1) ... Setting up r-cran-chron (2.3-59-1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-cran-filelock (1.0.2-2) ... Setting up r-bioc-genomeinfodbdata (1.2.9-1) ... Setting up r-cran-littler (0.3.17-1) ... Setting up r-cran-fs (1.6.1+dfsg-1) ... Setting up r-cran-rcpp (1.0.10-1) ... Setting up r-cran-curl (5.0.0+dfsg-1) ... Setting up r-cran-codetools (0.2-19-1) ... Setting up r-bioc-biocgenerics (0.44.0-2) ... Setting up r-cran-rlang (1.0.6-1) ... Setting up r-cran-matrixstats (0.63.0-1) ... Setting up r-base-dev (4.2.2.20221110-2) ... Setting up r-cran-assertthat (0.2.1-2) ... Setting up r-bioc-matrixgenerics (1.10.0-1) ... Setting up r-cran-xfun (0.37+dfsg-1) ... Setting up r-cran-sys (3.4.1-1) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (2.5.0-1) ... Setting up r-cran-backports (1.4.1-1) ... Setting up r-cran-mime (0.12-1+b1) ... Setting up libmoose-perl:i386 (2.2203-1) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.31-1) ... Setting up r-cran-yaml (2.3.7-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-xml2 (1.3.3-1+b1) ... Setting up r-bioc-protgenerics (1.30.0-1) ... Setting up r-cran-evaluate (0.20-1) ... Setting up r-cran-dbi (1.1.3-1) ... Setting up r-cran-highr (0.10+dfsg-1) ... Setting up r-cran-prettyunits (1.1.1-2) ... Setting up r-cran-fansi (1.0.4-1) ... Setting up r-cran-mass (7.3-58.2-1) ... Setting up r-cran-checkmate (2.1.0-1) ... Setting up r-cran-acepack (1.4.1-2+b5) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-data.table (1.14.8+dfsg-1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-foreign (0.8.84-1) ... Setting up r-cran-bit (4.0.5-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.6.0-1) ... Setting up r-cran-lifecycle (1.0.3+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-cran-dichromat (1:2.0-0.1-1) ... Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ... Setting up r-cran-deldir (1.0-6-1+b1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.1-1) ... Setting up r-cran-png (0.1-8-1) ... Setting up r-bioc-biobase (2.58.0-2) ... Setting up r-cran-jsonlite (1.8.4+dfsg-1) ... Setting up r-cran-rstudioapi (0.14-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.3-1) ... Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up r-cran-stringi (1.7.12-1) ... Setting up r-cran-cpp11 (0.4.3-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-bioc-s4vectors (0.36.1-1) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-cran-gridextra (2.3-3) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-later (1.3.0+dfsg-1+b1) ... Setting up r-cran-matrix (1.5-3-1) ... Setting up r-cran-tinytex (0.44-1) ... Setting up r-cran-knitr (1.42+dfsg-1) ... Setting up r-cran-mgcv (1.8-41-1) ... Setting up r-cran-cachem (1.0.7-1) ... Setting up r-bioc-iranges (2.32.0-1) ... Setting up r-cran-rjson (0.2.21-1) ... Setting up r-cran-rcurl (1.98-1.10+dfsg-1) ... Setting up r-cran-restfulr (0.0.15-1) ... Setting up r-cran-vctrs (0.5.2-1) ... Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ... Setting up r-cran-rcppeigen (0.3.3.9.3-1) ... Setting up r-cran-pillar (1.8.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-openssl (2.0.5+dfsg-1) ... Setting up r-cran-stringr (1.5.0-1) ... Setting up r-bioc-biocparallel (1.32.5-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-rhtslib (2.0.0+dfsg-1) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-tibble (3.1.8+dfsg-1) ... Setting up r-cran-survival (3.5-3-1) ... Setting up r-bioc-biocio (1.8.0+dfsg-1) ... Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... Setting up r-cran-interp (1.1-3-1) ... Setting up r-bioc-genomeinfodb (1.34.9-1) ... Setting up r-cran-httr (1.4.5+dfsg-1) ... Setting up r-cran-hms (1.1.2-1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up r-cran-purrr (1.0.1-1) ... Setting up r-cran-blob (1.2.3-1) ... Setting up r-cran-htmltools (0.5.4-1) ... Setting up r-bioc-xvector (0.38.0-1) ... Setting up r-cran-sass (0.4.5+dfsg-1) ... Setting up r-cran-dplyr (1.0.10-1) ... Setting up dh-r (20230121) ... Setting up r-cran-dbplyr (2.3.0+dfsg-1) ... Setting up r-cran-rsqlite (2.2.20-1) ... Setting up r-cran-progress (1.2.2-2) ... Setting up r-bioc-biocfilecache (2.6.1+dfsg-1) ... Setting up r-cran-ggplot2 (3.4.1+dfsg-1) ... Setting up r-bioc-genomicranges (1.50.2+dfsg-1) ... Setting up r-cran-httpuv (1.6.9+dfsg-1) ... Setting up r-cran-rpart (4.1.19-1) ... Setting up r-bioc-biostrings (2.66.0-1) ... Setting up r-bioc-annotationfilter (1.22.0+dfsg-1) ... Setting up r-cran-fontawesome (0.5.0-1) ... Setting up r-cran-latticeextra (0.6-30-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-viridis (0.6.2-1) ... Setting up r-cran-bslib (0.4.2+dfsg-1) ... Setting up r-cran-tidyr (1.3.0-1) ... Setting up r-bioc-rsamtools (2.14.0-1) ... Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ... Setting up r-bioc-keggrest (1.38.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.60.0-1) ... Setting up r-cran-shiny (1.7.4+dfsg-2) ... Setting up r-cran-rmarkdown (2.20+dfsg-1) ... Setting up r-bioc-biomart (2.54.0+dfsg-1) ... Setting up r-bioc-genomicalignments (1.34.0-1) ... Setting up r-bioc-rtracklayer (1.58.0-1) ... Setting up r-bioc-genomicfeatures (1.50.4+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.1+dfsg-1) ... Setting up r-bioc-bsgenome (1.66.3-1) ... Setting up r-bioc-ensembldb (2.22.0+dfsg-1) ... Setting up r-bioc-variantannotation (1.44.1-1) ... Setting up r-cran-htmltable (2.4.1-1) ... Setting up r-cran-hmisc (4.8-0-1) ... Setting up r-bioc-biovizbase (1.46.0-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-bioc-gviz-1.42.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-gviz_1.42.1+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-gviz dpkg-buildpackage: info: source version 1.42.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-gviz/ -O--buildsystem=R I: R Package: Gviz Version: 1.42.1 I: Building using R version 4.2.2.20221110-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 26 Feb 2023 11:21:26 +0100 mkdir -p /build/r-bioc-gviz-1.42.1\+dfsg/debian/r-bioc-gviz/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-gviz-1.42.1\+dfsg/debian/r-bioc-gviz/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 26 Feb 2023 11:21:26 +0100'" * installing *source* package 'Gviz' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Gviz) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. W: Ignoring specified R dependency: R (>= 4.2) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.9.25) I: Using r-bioc-iranges for Depends:IRanges (>= 1.99.18) I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.17.20) W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 I: Using r-cran-xml2 for Suggests:xml2 I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-testthat for Suggests:testthat I: Using r-bioc-xvector for Imports:XVector (>= 0.5.7) I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.25.13) I: Using r-cran-lattice for Imports:lattice I: Using r-cran-rcolorbrewer for Imports:RColorBrewer I: Using r-bioc-biomart for Imports:biomaRt (>= 2.11.0) I: Using r-bioc-annotationdbi for Imports:AnnotationDbi (>= 1.27.5) I: Using r-bioc-biobase for Imports:Biobase (>= 2.15.3) I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures (>= 1.17.22) I: Using r-bioc-ensembldb for Imports:ensembldb (>= 2.11.3) I: Using r-bioc-bsgenome for Imports:BSgenome (>= 1.33.1) I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.33.11) I: Using r-bioc-biovizbase for Imports:biovizBase (>= 1.13.8) I: Using r-bioc-rsamtools for Imports:Rsamtools (>= 1.17.28) I: Using r-cran-latticeextra for Imports:latticeExtra (>= 0.6-26) I: Using r-cran-matrixstats for Imports:matrixStats (>= 0.8.14) I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.1.16) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.1.3) I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.11.3) I: Using r-cran-digest for Imports:digest (>= 0.6.8) I: BioConductor API version: r-api-bioc-3.16 I: Use r-bioc-gviz as Debian binary package for variables substitution debian/rules override_dh_install make[1]: Entering directory '/build/r-bioc-gviz-1.42.1+dfsg' dh_install find debian -name "*.R" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/r-bioc-gviz-1.42.1+dfsg' dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installexamples -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-gviz' in '../r-bioc-gviz_1.42.1+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-gviz_1.42.1+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../r-bioc-gviz_1.42.1+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1952 and its subdirectories I: Current time: Tue Apr 18 22:44:03 -12 2023 I: pbuilder-time-stamp: 1681901043 Wed Apr 19 10:44:04 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Wed Apr 19 10:44:04 UTC 2023 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Wed Apr 19 10:46:12 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. Wed Apr 19 10:46:12 UTC 2023 I: r-bioc-gviz_1.42.1+dfsg-1_i386.changes: Format: 1.8 Date: Sun, 26 Feb 2023 11:21:26 +0100 Source: r-bioc-gviz Binary: r-bioc-gviz Architecture: all Version: 1.42.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-gviz - Plotting data and annotation information along genomic coordinate Changes: r-bioc-gviz (1.42.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 4ae718e9e7207572c5dc3958a1089196681e20b6 5142480 r-bioc-gviz_1.42.1+dfsg-1_all.deb 2025da22375c13b9a51e943b7b8896623e65eee5 15491 r-bioc-gviz_1.42.1+dfsg-1_i386.buildinfo Checksums-Sha256: 4de0acacc26e08de2af54a3e1180597360fc3ba65cb24199cc5309e0b10655d3 5142480 r-bioc-gviz_1.42.1+dfsg-1_all.deb 906b5968b14d340d74395529ba05c93ae9c085153a1fa1dca34e0c3c069caeec 15491 r-bioc-gviz_1.42.1+dfsg-1_i386.buildinfo Files: 360f888fbdfdda5673023e1bc7b41216 5142480 gnu-r optional r-bioc-gviz_1.42.1+dfsg-1_all.deb 2b8807683fe7540265829ec0a416ecb6 15491 gnu-r optional r-bioc-gviz_1.42.1+dfsg-1_i386.buildinfo Wed Apr 19 10:46:13 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6mh7Ub3x/r-bioc-gviz_1.42.1+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6mh7Ub3x/r-bioc-gviz_1.42.1+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6mh7Ub3x/r-bioc-gviz_1.42.1+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6mh7Ub3x/b1/r-bioc-gviz_1.42.1+dfsg-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.6mh7Ub3x/b2/r-bioc-gviz_1.42.1+dfsg-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.434s) 0.434s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.068s) 0.068s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed Apr 19 10:46:15 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Wed Apr 19 10:46:15 UTC 2023 I: r-bioc-gviz from bookworm built successfully and reproducibly on i386. Wed Apr 19 10:46:16 UTC 2023 I: Submitting .buildinfo files to external archives: Wed Apr 19 10:46:16 UTC 2023 I: Submitting 16K b1/r-bioc-gviz_1.42.1+dfsg-1_i386.buildinfo.asc Wed Apr 19 10:46:18 UTC 2023 I: Submitting 20K b2/r-bioc-gviz_1.42.1+dfsg-1_i386.buildinfo.asc Wed Apr 19 10:46:19 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 19 10:46:19 UTC 2023 I: Done submitting .buildinfo files. Wed Apr 19 10:46:19 UTC 2023 I: Removing signed r-bioc-gviz_1.42.1+dfsg-1_i386.buildinfo.asc files: removed './b1/r-bioc-gviz_1.42.1+dfsg-1_i386.buildinfo.asc' removed './b2/r-bioc-gviz_1.42.1+dfsg-1_i386.buildinfo.asc'