Thu Apr 27 07:36:09 UTC 2023  I: starting to build r-bioc-biostrings/bookworm/i386 on jenkins on '2023-04-27 07:35'
Thu Apr 27 07:36:09 UTC 2023  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_4/13226/console.log
Thu Apr 27 07:36:09 UTC 2023  I: Downloading source for bookworm/r-bioc-biostrings=2.66.0-1
--2023-04-27 07:36:09--  http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-biostrings/r-bioc-biostrings_2.66.0-1.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2254 (2.2K) [text/prs.lines.tag]
Saving to: ‘r-bioc-biostrings_2.66.0-1.dsc’

     0K ..                                                    100% 10.5M=0s

2023-04-27 07:36:09 (10.5 MB/s) - ‘r-bioc-biostrings_2.66.0-1.dsc’ saved [2254/2254]

Thu Apr 27 07:36:09 UTC 2023  I: r-bioc-biostrings_2.66.0-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-biostrings
Binary: r-bioc-biostrings
Architecture: any
Version: 2.66.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/Biostrings/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-biostrings
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-biostrings.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-xvector (>= 0.37.1), r-bioc-genomeinfodb, r-cran-crayon
Package-List:
 r-bioc-biostrings deb gnu-r optional arch=any
Checksums-Sha1:
 aa8e4f4d55b8009a5ad25c14051970561bd68395 12426149 r-bioc-biostrings_2.66.0.orig.tar.gz
 b69ccadb9bbfcf3c6964027a878bd489ccf83d12 4964 r-bioc-biostrings_2.66.0-1.debian.tar.xz
Checksums-Sha256:
 7312c508bc2fe6ea3da75edd621b41a35929f9dbdca16d25eb3724ca2cd206fd 12426149 r-bioc-biostrings_2.66.0.orig.tar.gz
 ab3362e54c7480c323826070e320f92c7c061ecb072052feeb3257eb3720cad5 4964 r-bioc-biostrings_2.66.0-1.debian.tar.xz
Files:
 0a8f1876901ffad59e00da7c74db5352 12426149 r-bioc-biostrings_2.66.0.orig.tar.gz
 da4d31f6c2a9803ca7d201ddfeba3815 4964 r-bioc-biostrings_2.66.0-1.debian.tar.xz

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Thu Apr 27 07:36:09 UTC 2023  I: Checking whether the package is not for us
Thu Apr 27 07:36:09 UTC 2023  I: Starting 1st build on remote node ionos16-i386.debian.net.
Thu Apr 27 07:36:09 UTC 2023  I: Preparing to do remote build '1' on ionos16-i386.debian.net.
Thu Apr 27 07:37:27 UTC 2023  I: Deleting $TMPDIR on ionos16-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed May 29 01:59:11 -12 2024
I: pbuilder-time-stamp: 1716991151
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [r-bioc-biostrings_2.66.0-1.dsc]
I: copying [./r-bioc-biostrings_2.66.0.orig.tar.gz]
I: copying [./r-bioc-biostrings_2.66.0-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Nov 20 18:26:00 2022 -12
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-biostrings_2.66.0-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-biostrings in r-bioc-biostrings-2.66.0
dpkg-source: info: unpacking r-bioc-biostrings_2.66.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biostrings_2.66.0-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/99200/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='i386'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
  DISTRIBUTION='bookworm'
  HOME='/root'
  HOST_ARCH='i386'
  IFS=' 	
  '
  INVOCATION_ID='87a87b0ce5dc4562ba54a9e3eb5e7695'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
  LD_PRELOAD='libeatmydata.so'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='99200'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.THFO9x5x/pbuilderrc_DhrV --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.THFO9x5x/b1 --logfile b1/build.log r-bioc-biostrings_2.66.0-1.dsc'
  SUDO_GID='112'
  SUDO_UID='107'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://85.184.249.68:3128'
I: uname -a
  Linux ionos16-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux
I: ls -l /bin
  total 6036
  -rwxr-xr-x 1 root root 1408088 Apr 23  2023 bash
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bunzip2
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bzcat
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Sep 18  2022 bzdiff
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4893 Nov 27  2021 bzexe
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Sep 18  2022 bzgrep
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bzip2
  -rwxr-xr-x 1 root root   17892 Sep 18  2022 bzip2recover
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Sep 18  2022 bzmore
  -rwxr-xr-x 1 root root   42920 Sep 20  2022 cat
  -rwxr-xr-x 1 root root   79816 Sep 20  2022 chgrp
  -rwxr-xr-x 1 root root   67496 Sep 20  2022 chmod
  -rwxr-xr-x 1 root root   79816 Sep 20  2022 chown
  -rwxr-xr-x 1 root root  162024 Sep 20  2022 cp
  -rwxr-xr-x 1 root root  136916 Jan  5  2023 dash
  -rwxr-xr-x 1 root root  137160 Sep 20  2022 date
  -rwxr-xr-x 1 root root  100364 Sep 20  2022 dd
  -rwxr-xr-x 1 root root  108940 Sep 20  2022 df
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 dir
  -rwxr-xr-x 1 root root   87760 Mar 22  2023 dmesg
  lrwxrwxrwx 1 root root       8 Dec 19  2022 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Dec 19  2022 domainname -> hostname
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 echo
  -rwxr-xr-x 1 root root      41 Jan 24  2023 egrep
  -rwxr-xr-x 1 root root   34664 Sep 20  2022 false
  -rwxr-xr-x 1 root root      41 Jan 24  2023 fgrep
  -rwxr-xr-x 1 root root   84272 Mar 22  2023 findmnt
  -rwsr-xr-x 1 root root   30240 Mar 22  2023 fusermount
  -rwxr-xr-x 1 root root  218680 Jan 24  2023 grep
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 gunzip
  -rwxr-xr-x 1 root root    6447 Apr  9  2022 gzexe
  -rwxr-xr-x 1 root root  100952 Apr  9  2022 gzip
  -rwxr-xr-x 1 root root   21916 Dec 19  2022 hostname
  -rwxr-xr-x 1 root root   75756 Sep 20  2022 ln
  -rwxr-xr-x 1 root root   55600 Mar 22  2023 login
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 ls
  -rwxr-xr-x 1 root root  214568 Mar 22  2023 lsblk
  -rwxr-xr-x 1 root root   96328 Sep 20  2022 mkdir
  -rwxr-xr-x 1 root root   84008 Sep 20  2022 mknod
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 mktemp
  -rwxr-xr-x 1 root root   63016 Mar 22  2023 more
  -rwsr-xr-x 1 root root   58912 Mar 22  2023 mount
  -rwxr-xr-x 1 root root   13856 Mar 22  2023 mountpoint
  -rwxr-xr-x 1 root root  157932 Sep 20  2022 mv
  lrwxrwxrwx 1 root root       8 Dec 19  2022 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr  2  2023 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 pwd
  lrwxrwxrwx 1 root root       4 Apr 23  2023 rbash -> bash
  -rwxr-xr-x 1 root root   51080 Sep 20  2022 readlink
  -rwxr-xr-x 1 root root   75720 Sep 20  2022 rm
  -rwxr-xr-x 1 root root   51080 Sep 20  2022 rmdir
  -rwxr-xr-x 1 root root   22308 Nov  2  2022 run-parts
  -rwxr-xr-x 1 root root  133224 Jan  5  2023 sed
  lrwxrwxrwx 1 root root       4 Jan  5  2023 sh -> dash
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 sleep
  -rwxr-xr-x 1 root root   87976 Sep 20  2022 stty
  -rwsr-xr-x 1 root root   83492 Mar 22  2023 su
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 sync
  -rwxr-xr-x 1 root root  598456 Apr  6  2023 tar
  -rwxr-xr-x 1 root root   13860 Nov  2  2022 tempfile
  -rwxr-xr-x 1 root root  120776 Sep 20  2022 touch
  -rwxr-xr-x 1 root root   34664 Sep 20  2022 true
  -rwxr-xr-x 1 root root   17892 Mar 22  2023 ulockmgr_server
  -rwsr-xr-x 1 root root   30236 Mar 22  2023 umount
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 uname
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 uncompress
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 vdir
  -rwxr-xr-x 1 root root   71216 Mar 22  2023 wdctl
  lrwxrwxrwx 1 root root       8 Dec 19  2022 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Apr  9  2022 zcat
  -rwxr-xr-x 1 root root    1678 Apr  9  2022 zcmp
  -rwxr-xr-x 1 root root    6460 Apr  9  2022 zdiff
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zegrep
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zfgrep
  -rwxr-xr-x 1 root root    2081 Apr  9  2022 zforce
  -rwxr-xr-x 1 root root    8103 Apr  9  2022 zgrep
  -rwxr-xr-x 1 root root    2206 Apr  9  2022 zless
  -rwxr-xr-x 1 root root    1842 Apr  9  2022 zmore
  -rwxr-xr-x 1 root root    4577 Apr  9  2022 znew
I: user script /srv/workspace/pbuilder/99200/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-xvector (>= 0.37.1), r-bioc-genomeinfodb, r-cran-crayon
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
  Package dh-r is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.37.0); however:
  Package r-bioc-biocgenerics is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.27.12); however:
  Package r-bioc-s4vectors is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.31.2); however:
  Package r-bioc-iranges is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-xvector (>= 0.37.1); however:
  Package r-bioc-xvector is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb; however:
  Package r-bioc-genomeinfodb is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-crayon; however:
  Package r-cran-crayon is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-iranges{a} r-bioc-s4vectors{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-bitops{a} r-cran-crayon{a} r-cran-rcurl{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-mockery r-cran-testthat r-cran-withr r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 187 newly installed, 0 to remove and 0 not upgraded.
Need to get 122 MB of archives. After unpacking 333 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.8-1 [1412 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 11 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 dctrl-tools i386 2.24-3 [105 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 26 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 28 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 35 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 zip i386 3.0-13 [236 kB]
Get: 37 http://deb.debian.org/debian bookworm/main i386 unzip i386 6.0-28 [166 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 libpaper1 i386 1.1.29 [12.7 kB]
Get: 39 http://deb.debian.org/debian bookworm/main i386 libpaper-utils i386 1.1.29 [8972 B]
Get: 40 http://deb.debian.org/debian bookworm/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 41 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB]
Get: 43 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-4 [410 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB]
Get: 48 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB]
Get: 49 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB]
Get: 50 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 51 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB]
Get: 52 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 53 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB]
Get: 54 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB]
Get: 55 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB]
Get: 56 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB]
Get: 57 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB]
Get: 58 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB]
Get: 59 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB]
Get: 60 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB]
Get: 61 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB]
Get: 62 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB]
Get: 63 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB]
Get: 64 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB]
Get: 65 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB]
Get: 66 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB]
Get: 67 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB]
Get: 68 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-9 [420 kB]
Get: 69 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB]
Get: 70 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB]
Get: 71 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB]
Get: 72 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB]
Get: 73 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB]
Get: 74 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB]
Get: 75 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB]
Get: 76 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB]
Get: 77 http://deb.debian.org/debian bookworm/main i386 libthai-data all 0.1.29-1 [176 kB]
Get: 78 http://deb.debian.org/debian bookworm/main i386 libdatrie1 i386 0.2.13-2+b1 [45.0 kB]
Get: 79 http://deb.debian.org/debian bookworm/main i386 libthai0 i386 0.1.29-1 [58.6 kB]
Get: 80 http://deb.debian.org/debian bookworm/main i386 libpango-1.0-0 i386 1.50.12+ds-1 [220 kB]
Get: 81 http://deb.debian.org/debian bookworm/main i386 libpangoft2-1.0-0 i386 1.50.12+ds-1 [50.5 kB]
Get: 82 http://deb.debian.org/debian bookworm/main i386 libpangocairo-1.0-0 i386 1.50.12+ds-1 [35.4 kB]
Get: 83 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB]
Get: 84 http://deb.debian.org/debian bookworm/main i386 libtcl8.6 i386 8.6.13+dfsg-2 [1095 kB]
Get: 85 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB]
Get: 86 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB]
Get: 87 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB]
Get: 88 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB]
Get: 89 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB]
Get: 90 http://deb.debian.org/debian bookworm/main i386 libxft2 i386 2.3.6-1 [62.8 kB]
Get: 91 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB]
Get: 92 http://deb.debian.org/debian bookworm/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB]
Get: 93 http://deb.debian.org/debian bookworm/main i386 libtk8.6 i386 8.6.13-2 [824 kB]
Get: 94 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB]
Get: 95 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB]
Get: 96 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB]
Get: 97 http://deb.debian.org/debian bookworm/main i386 r-base-core i386 4.2.2.20221110-2 [26.1 MB]
Get: 98 http://deb.debian.org/debian bookworm/main i386 libgfortran-12-dev i386 12.2.0-14 [761 kB]
Get: 99 http://deb.debian.org/debian bookworm/main i386 gfortran-12 i386 12.2.0-14 [10.5 MB]
Get: 100 http://deb.debian.org/debian bookworm/main i386 gfortran i386 4:12.2.0-3 [1432 B]
Get: 101 http://deb.debian.org/debian bookworm/main i386 libblas-dev i386 3.11.0-2 [151 kB]
Get: 102 http://deb.debian.org/debian bookworm/main i386 liblapack-dev i386 3.11.0-2 [4187 kB]
Get: 103 http://deb.debian.org/debian bookworm/main i386 libncurses6 i386 6.4-2 [111 kB]
Get: 104 http://deb.debian.org/debian bookworm/main i386 libncurses-dev i386 6.4-2 [379 kB]
Get: 105 http://deb.debian.org/debian bookworm/main i386 libncurses5-dev i386 6.4-2 [932 B]
Get: 106 http://deb.debian.org/debian bookworm/main i386 libreadline-dev i386 8.2-1.3 [164 kB]
Get: 107 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2 [304 kB]
Get: 108 http://deb.debian.org/debian bookworm/main i386 libjpeg-dev i386 1:2.1.5-2 [71.8 kB]
Get: 109 http://deb.debian.org/debian bookworm/main i386 libpcre2-16-0 i386 10.42-1 [243 kB]
Get: 110 http://deb.debian.org/debian bookworm/main i386 libpcre2-32-0 i386 10.42-1 [232 kB]
Get: 111 http://deb.debian.org/debian bookworm/main i386 libpcre2-posix3 i386 10.42-1 [55.4 kB]
Get: 112 http://deb.debian.org/debian bookworm/main i386 libpcre2-dev i386 10.42-1 [761 kB]
Get: 113 http://deb.debian.org/debian bookworm/main i386 libpcre3 i386 2:8.39-15 [340 kB]
Get: 114 http://deb.debian.org/debian bookworm/main i386 libpcre16-3 i386 2:8.39-15 [258 kB]
Get: 115 http://deb.debian.org/debian bookworm/main i386 libpcre32-3 i386 2:8.39-15 [248 kB]
Get: 116 http://deb.debian.org/debian bookworm/main i386 libpcrecpp0v5 i386 2:8.39-15 [144 kB]
Get: 117 http://deb.debian.org/debian bookworm/main i386 libpcre3-dev i386 2:8.39-15 [669 kB]
Get: 118 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB]
Get: 119 http://deb.debian.org/debian bookworm/main i386 libpng-dev i386 1.6.39-2 [367 kB]
Get: 120 http://deb.debian.org/debian bookworm/main i386 libbz2-dev i386 1.0.8-5+b1 [31.5 kB]
Get: 121 http://deb.debian.org/debian bookworm/main i386 liblzma-dev i386 5.4.1-0.2 [272 kB]
Get: 122 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB]
Get: 123 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB]
Get: 124 http://deb.debian.org/debian bookworm/main i386 libxmuu1 i386 2:1.1.3-3 [24.1 kB]
Get: 125 http://deb.debian.org/debian bookworm/main i386 xauth i386 1:1.1.2-1 [36.7 kB]
Get: 126 http://deb.debian.org/debian bookworm/main i386 libpkgconf3 i386 1.8.1-1 [38.3 kB]
Get: 127 http://deb.debian.org/debian bookworm/main i386 pkgconf-bin i386 1.8.1-1 [29.8 kB]
Get: 128 http://deb.debian.org/debian bookworm/main i386 pkgconf i386 1.8.1-1 [25.9 kB]
Get: 129 http://deb.debian.org/debian bookworm/main i386 pkg-config i386 1.8.1-1 [13.7 kB]
Get: 130 http://deb.debian.org/debian bookworm/main i386 r-base-dev all 4.2.2.20221110-2 [4492 B]
Get: 131 http://deb.debian.org/debian bookworm/main i386 libfile-which-perl all 1.27-2 [15.1 kB]
Get: 132 http://deb.debian.org/debian bookworm/main i386 libswitch-perl all 2.17-3 [20.3 kB]
Get: 133 http://deb.debian.org/debian bookworm/main i386 libclone-perl i386 0.46-1 [13.8 kB]
Get: 134 http://deb.debian.org/debian bookworm/main i386 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 135 http://deb.debian.org/debian bookworm/main i386 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 136 http://deb.debian.org/debian bookworm/main i386 libhttp-date-perl all 6.05-2 [10.5 kB]
Get: 137 http://deb.debian.org/debian bookworm/main i386 libio-html-perl all 1.004-3 [16.2 kB]
Get: 138 http://deb.debian.org/debian bookworm/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 139 http://deb.debian.org/debian bookworm/main i386 libregexp-ipv6-perl all 0.03-3 [5212 B]
Get: 140 http://deb.debian.org/debian bookworm/main i386 liburi-perl all 5.17-1 [90.4 kB]
Get: 141 http://deb.debian.org/debian bookworm/main i386 libhttp-message-perl all 6.44-1 [81.7 kB]
Get: 142 http://deb.debian.org/debian bookworm/main i386 libparams-util-perl i386 1.102-2+b1 [25.0 kB]
Get: 143 http://deb.debian.org/debian bookworm/main i386 libsub-install-perl all 0.929-1 [10.5 kB]
Get: 144 http://deb.debian.org/debian bookworm/main i386 libdata-optlist-perl all 0.113-1 [10.6 kB]
Get: 145 http://deb.debian.org/debian bookworm/main i386 libb-hooks-op-check-perl i386 0.22-2+b1 [10.6 kB]
Get: 146 http://deb.debian.org/debian bookworm/main i386 libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get: 147 http://deb.debian.org/debian bookworm/main i386 libdevel-callchecker-perl i386 0.008-2 [15.8 kB]
Get: 148 http://deb.debian.org/debian bookworm/main i386 libparams-classify-perl i386 0.015-2+b1 [23.7 kB]
Get: 149 http://deb.debian.org/debian bookworm/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get: 150 http://deb.debian.org/debian bookworm/main i386 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get: 151 http://deb.debian.org/debian bookworm/main i386 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get: 152 http://deb.debian.org/debian bookworm/main i386 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get: 153 http://deb.debian.org/debian bookworm/main i386 libclass-load-perl all 0.25-2 [15.3 kB]
Get: 154 http://deb.debian.org/debian bookworm/main i386 libclass-load-xs-perl i386 0.10-2+b1 [14.1 kB]
Get: 155 http://deb.debian.org/debian bookworm/main i386 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get: 156 http://deb.debian.org/debian bookworm/main i386 libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get: 157 http://deb.debian.org/debian bookworm/main i386 libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get: 158 http://deb.debian.org/debian bookworm/main i386 libclass-c3-perl all 0.35-2 [21.0 kB]
Get: 159 http://deb.debian.org/debian bookworm/main i386 libmro-compat-perl all 0.15-2 [11.8 kB]
Get: 160 http://deb.debian.org/debian bookworm/main i386 libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get: 161 http://deb.debian.org/debian bookworm/main i386 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get: 162 http://deb.debian.org/debian bookworm/main i386 libsub-exporter-perl all 0.989-1 [50.5 kB]
Get: 163 http://deb.debian.org/debian bookworm/main i386 libeval-closure-perl all 0.14-3 [11.2 kB]
Get: 164 http://deb.debian.org/debian bookworm/main i386 libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get: 165 http://deb.debian.org/debian bookworm/main i386 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get: 166 http://deb.debian.org/debian bookworm/main i386 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get: 167 http://deb.debian.org/debian bookworm/main i386 libpackage-stash-xs-perl i386 0.30-1+b1 [20.2 kB]
Get: 168 http://deb.debian.org/debian bookworm/main i386 libmoose-perl i386 2.2203-1 [795 kB]
Get: 169 http://deb.debian.org/debian bookworm/main i386 libvariable-magic-perl i386 0.63-1+b1 [44.5 kB]
Get: 170 http://deb.debian.org/debian bookworm/main i386 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get: 171 http://deb.debian.org/debian bookworm/main i386 libsub-identify-perl i386 0.14-3 [10.9 kB]
Get: 172 http://deb.debian.org/debian bookworm/main i386 libsub-name-perl i386 0.26-2+b1 [12.7 kB]
Get: 173 http://deb.debian.org/debian bookworm/main i386 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get: 174 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB]
Get: 175 http://deb.debian.org/debian bookworm/main i386 libwww-curl-perl i386 4.17-10 [62.0 kB]
Get: 176 http://deb.debian.org/debian bookworm/main i386 libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get: 177 http://deb.debian.org/debian bookworm/main i386 dh-r all 20230121 [37.9 kB]
Get: 178 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocgenerics all 0.44.0-2 [600 kB]
Get: 179 http://deb.debian.org/debian bookworm/main i386 r-bioc-s4vectors i386 0.36.1-1 [2033 kB]
Get: 180 http://deb.debian.org/debian bookworm/main i386 r-bioc-iranges i386 2.32.0-1 [2197 kB]
Get: 181 http://deb.debian.org/debian bookworm/main i386 r-cran-bitops i386 1.0-7-1 [30.5 kB]
Get: 182 http://deb.debian.org/debian bookworm/main i386 r-cran-rcurl i386 1.98-1.10+dfsg-1 [785 kB]
Get: 183 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB]
Get: 184 http://deb.debian.org/debian bookworm/main i386 r-bioc-genomeinfodb all 1.34.9-1 [3938 kB]
Get: 185 http://deb.debian.org/debian bookworm/main i386 r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B]
Get: 186 http://deb.debian.org/debian bookworm/main i386 r-bioc-xvector i386 0.38.0-1 [621 kB]
Get: 187 http://deb.debian.org/debian bookworm/main i386 r-cran-crayon all 1.5.2-1 [165 kB]
Fetched 122 MB in 1s (94.4 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package readline-common.
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(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ...
Unpacking readline-common (8.2-1.3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package openssl.
Preparing to unpack .../002-openssl_3.0.8-1_i386.deb ...
Unpacking openssl (3.0.8-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../003-ca-certificates_20230311_all.deb ...
Unpacking ca-certificates (20230311) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_i386.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:i386.
Preparing to unpack .../005-libmagic1_1%3a5.44-3_i386.deb ...
Unpacking libmagic1:i386 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../006-file_1%3a5.44-3_i386.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../007-gettext-base_0.21-12_i386.deb ...
Unpacking gettext-base (0.21-12) ...
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Setting up libsub-identify-perl (0.14-3) ...
Setting up libglib2.0-0:i386 (2.74.6-2) ...
No schema files found: doing nothing.
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Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
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Setting up zip (3.0-13) ...
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Setting up libblas3:i386 (3.11.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
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Setting up libfribidi0:i386 (1.0.8-2.1) ...
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Setting up openssl (3.0.8-1) ...
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Setting up libxml2:i386 (2.9.14+dfsg-1.2) ...
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update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libice6:i386 (2:1.0.10-1) ...
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update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
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Setting up fontconfig-config (2.14.1-4) ...
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Setting up libpng-dev:i386 (1.6.39-2) ...
Setting up libjpeg-dev:i386 (1:2.1.5-2) ...
Setting up libgfortran-12-dev:i386 (12.2.0-14) ...
Setting up libxcb-shm0:i386 (1.15-1) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:i386 (8.2-1.3) ...
Setting up libdevel-callchecker-perl:i386 (0.008-2) ...
Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ...
Setting up pkgconf:i386 (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
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Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up gfortran-12 (12.2.0-14) ...
Setting up libfreetype6:i386 (2.12.1+dfsg-4) ...
Setting up liblapack-dev:i386 (3.11.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode
Setting up libdata-optlist-perl (0.113-1) ...
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Setting up ucf (3.0043+nmu1) ...
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Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up libncurses5-dev:i386 (6.4-2) ...
Setting up libcurl4:i386 (7.88.1-9) ...
Setting up libx11-6:i386 (2:1.8.4-2) ...
Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ...
Setting up libfontconfig1:i386 (2.14.1-4) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:i386 (2:1.2.3-1) ...
Setting up libxmuu1:i386 (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.989-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libpaper1:i386 (1.1.29) ...

Creating config file /etc/papersize with new version
Setting up fontconfig (2.14.1-4) ...
Regenerating fonts cache... done.
Setting up libxrender1:i386 (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:i386 (0.015-2+b1) ...
Setting up libpango-1.0-0:i386 (1.50.12+ds-1) ...
Setting up libxext6:i386 (2:1.3.4-1+b1) ...
Setting up libcurl3-gnutls:i386 (7.88.1-9) ...
Setting up libpaper-utils (1.1.29) ...
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Not building database; man-db/auto-update is not 'true'.
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update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:i386 (1.16.0-7) ...
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Setting up libxt6:i386 (1:1.2.1-1.1) ...
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Setting up libpangoft2-1.0-0:i386 (1.50.12+ds-1) ...
Setting up libpangocairo-1.0-0:i386 (1.50.12+ds-1) ...
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Setting up libmodule-implementation-perl (0.09-2) ...
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Setting up libtk8.6:i386 (8.6.13-2) ...
Setting up libwww-curl-perl:i386 (4.17-10) ...
Setting up debhelper (13.11.4) ...
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Setting up r-base-core (4.2.2.20221110-2) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
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Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.9-1) ...
Setting up r-bioc-biocgenerics (0.44.0-2) ...
Setting up r-base-dev (4.2.2.20221110-2) ...
Setting up libmoose-perl:i386 (2.2203-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ...
Setting up r-bioc-s4vectors (0.36.1-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-bioc-iranges (2.32.0-1) ...
Setting up r-cran-rcurl (1.98-1.10+dfsg-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-genomeinfodb (1.34.9-1) ...
Setting up r-bioc-xvector (0.38.0-1) ...
Setting up dh-r (20230121) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/r-bioc-biostrings-2.66.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../r-bioc-biostrings_2.66.0-1_source.changes
dpkg-buildpackage: info: source package r-bioc-biostrings
dpkg-buildpackage: info: source version 2.66.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary
dh binary --buildsystem R
   dh_update_autotools_config -O--buildsystem=R
   dh_autoreconf -O--buildsystem=R
   dh_auto_configure -O--buildsystem=R
   dh_auto_build -O--buildsystem=R
   dh_auto_test -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=R
   dh_prep -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-biostrings/ -O--buildsystem=R
I: R Package: Biostrings Version: 2.66.0
I: Building using R version 4.2.2.20221110-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 21 Nov 2022 07:11:38 +0100
	mkdir -p /build/r-bioc-biostrings-2.66.0/debian/r-bioc-biostrings/usr/lib/R/site-library
	R CMD INSTALL -l /build/r-bioc-biostrings-2.66.0/debian/r-bioc-biostrings/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 21 Nov 2022 07:11:38 +0100'"
* installing *source* package 'Biostrings' ...
** using staged installation
** libs
make[1]: Entering directory '/build/r-bioc-biostrings-2.66.0/src'
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c BAB_class.c -o BAB_class.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c BitMatrix.c -o BitMatrix.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c MIndex_class.c -o MIndex_class.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c PreprocessedTB_class.c -o PreprocessedTB_class.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c RoSeqs_utils.c -o RoSeqs_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c SparseList_utils.c -o SparseList_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c XStringSetList_class.c -o XStringSetList_class.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c XStringSet_class.c -o XStringSet_class.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c XString_class.c -o XString_class.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c align_needwunsQS.c -o align_needwunsQS.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c align_utils.c -o align_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c find_palindromes.c -o find_palindromes.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c gtestsim.c -o gtestsim.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c inject_code.c -o inject_code.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c letter_frequency.c -o letter_frequency.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c lowlevel_matching.c -o lowlevel_matching.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c match_PWM.c -o match_PWM.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c match_pattern.c -o match_pattern.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c match_pattern_indels.c -o match_pattern_indels.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c match_pattern_shiftor.c -o match_pattern_shiftor.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c match_pdict.c -o match_pdict.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c match_pdict_Twobit.c -o match_pdict_Twobit.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c match_pdict_utils.c -o match_pdict_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c match_reporting.c -o match_reporting.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c matchprobes.c -o matchprobes.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c pmatchPattern.c -o pmatchPattern.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c read_fasta_files.c -o read_fasta_files.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c read_fastq_files.c -o read_fastq_files.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c replaceAt.c -o replaceAt.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c replace_letter_at.c -o replace_letter_at.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c strutils.c -o strutils.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c translate.c -o translate.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c unstrsplit_methods.c -o unstrsplit_methods.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c utils.c -o utils.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2  -c xscat.c -o xscat.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/build/r-bioc-biostrings-2.66.0/src'
make[1]: Entering directory '/build/r-bioc-biostrings-2.66.0/src'
make[1]: Leaving directory '/build/r-bioc-biostrings-2.66.0/src'
installing to /build/r-bioc-biostrings-2.66.0/debian/r-bioc-biostrings/usr/lib/R/site-library/00LOCK-r-bioc-biostrings-2.66.0/00new/Biostrings/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'twoWayAlphabetFrequencyByQuality' with signature '"QualityScaledXStringSet"': no definition for class "QualityScaledXStringSet"
Creating a new generic function for 'strsplit' in package 'Biostrings'
Creating a generic function for 'ls' from package 'base' in package 'Biostrings'
Creating a new generic function for 'pattern' in package 'Biostrings'
Creating a new generic function for 'offset' in package 'Biostrings'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Biostrings)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306.
W: Ignoring specified R dependency: R (>= 4.0.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12)
I: Using r-bioc-iranges for Depends:IRanges (>= 2.31.2)
I: Using r-bioc-xvector for Depends:XVector (>= 0.37.1)
I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb
I: Using r-bioc-bsgenome for Suggests:BSgenome (>= 1.13.14)
W: Cannot find a debian package for Suggests:BSgenome.Celegans.UCSC.ce2 (>= 1.3.11)
W: Cannot find a debian package for Suggests:BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11)
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg18
W: Cannot find a debian package for Suggests:drosophila2probe
W: Cannot find a debian package for Suggests:hgu95av2probe
W: Cannot find a debian package for Suggests:hgu133aprobe
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures (>= 1.3.14)
W: Cannot find a debian package for Suggests:hgu95av2cdf
I: Using r-bioc-affy for Suggests:affy (>= 1.41.3)
W: Cannot find a debian package for Suggests:affydata (>= 1.11.5)
I: Using r-cran-runit for Suggests:RUnit
I: Using r-cran-crayon for Imports:crayon
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: Using r-bioc-xvector for LinkingTo:XVector
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-biostrings as Debian binary package for variables substitution
   dh_installdocs -O--buildsystem=R
   dh_installchangelogs -O--buildsystem=R
   dh_installsystemduser -O--buildsystem=R
   dh_perl -O--buildsystem=R
   dh_link -O--buildsystem=R
   dh_strip_nondeterminism -O--buildsystem=R
   dh_compress -O--buildsystem=R
   dh_fixperms -O--buildsystem=R
   dh_missing -O--buildsystem=R
   dh_dwz -a -O--buildsystem=R
   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
   dh_installdeb -O--buildsystem=R
   dh_gencontrol -O--buildsystem=R
   dh_md5sums -O--buildsystem=R
   dh_builddeb -O--buildsystem=R
dpkg-deb: building package 'r-bioc-biostrings' in '../r-bioc-biostrings_2.66.0-1_i386.deb'.
dpkg-deb: building package 'r-bioc-biostrings-dbgsym' in '../r-bioc-biostrings-dbgsym_2.66.0-1_i386.deb'.
 dpkg-genbuildinfo --build=binary -O../r-bioc-biostrings_2.66.0-1_i386.buildinfo
 dpkg-genchanges --build=binary -O../r-bioc-biostrings_2.66.0-1_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/99200 and its subdirectories
I: Current time: Wed May 29 02:00:26 -12 2024
I: pbuilder-time-stamp: 1716991226
Thu Apr 27 07:37:27 UTC 2023  I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net.
Thu Apr 27 07:37:27 UTC 2023  I: Preparing to do remote build '2' on ionos2-i386.debian.net.
Thu Apr 27 07:40:08 UTC 2023  I: Deleting $TMPDIR on ionos2-i386.debian.net.
Thu Apr 27 07:40:08 UTC 2023  I: r-bioc-biostrings_2.66.0-1_i386.changes:
Format: 1.8
Date: Mon, 21 Nov 2022 07:11:38 +0100
Source: r-bioc-biostrings
Binary: r-bioc-biostrings r-bioc-biostrings-dbgsym
Architecture: i386
Version: 2.66.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-biostrings - GNU R string objects representing biological sequences
Changes:
 r-bioc-biostrings (2.66.0-1) unstable; urgency=medium
 .
   * Disable reprotest
   * New upstream version
   * dh-update-R to update Build-Depends (routine-update)
Checksums-Sha1:
 835a9b3498cd104ef01a99a789f4aedafaa3904d 201672 r-bioc-biostrings-dbgsym_2.66.0-1_i386.deb
 802c027bab033706035b2b284ad78855737b803d 10181 r-bioc-biostrings_2.66.0-1_i386.buildinfo
 db06778a4b7479f8b20ec39a4f157e7bf65d3d5f 13865660 r-bioc-biostrings_2.66.0-1_i386.deb
Checksums-Sha256:
 0e07fcb9ef1e913edd049c0077471bbe48a55a8fae9c4ac5cdc9bfc4d8eeabad 201672 r-bioc-biostrings-dbgsym_2.66.0-1_i386.deb
 a7deb6c6c63eceec9ad865b712a4d6d6b47d984d25a4e63d09b33341264bf717 10181 r-bioc-biostrings_2.66.0-1_i386.buildinfo
 268c2df4f26238312621679f25b259e413d2a9a193438f8d760d4c798fbe63fd 13865660 r-bioc-biostrings_2.66.0-1_i386.deb
Files:
 729b2ecedbd5a8ef7e35c0c96b6c0a75 201672 debug optional r-bioc-biostrings-dbgsym_2.66.0-1_i386.deb
 ab66168bcc42a2437f006f591cc5152c 10181 gnu-r optional r-bioc-biostrings_2.66.0-1_i386.buildinfo
 1e32f22e8b91fbc6ffde18d64779b88d 13865660 gnu-r optional r-bioc-biostrings_2.66.0-1_i386.deb
Thu Apr 27 07:40:09 UTC 2023  I: diffoscope 241 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.THFO9x5x/r-bioc-biostrings_2.66.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.THFO9x5x/r-bioc-biostrings_2.66.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.THFO9x5x/r-bioc-biostrings_2.66.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.THFO9x5x/b1/r-bioc-biostrings_2.66.0-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.THFO9x5x/b2/r-bioc-biostrings_2.66.0-1_i386.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     abc.DotChangesFile

## main (total time: 0.483s)
       0.483s      2 calls    outputs
       0.000s      1 call     cleanup

## recognizes (total time: 0.176s)
       0.175s     12 calls    diffoscope.comparators.binary.FilesystemFile
       0.000s     10 calls    abc.DotChangesFile

## specialize (total time: 0.000s)
       0.000s      1 call     specialize
Thu Apr 27 07:40:11 UTC 2023  I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists.
Thu Apr 27 07:40:11 UTC 2023  I: r-bioc-biostrings from bookworm built successfully and reproducibly on i386.
Thu Apr 27 07:40:12 UTC 2023  I: Submitting .buildinfo files to external archives:
Thu Apr 27 07:40:12 UTC 2023  I: Submitting 12K	b1/r-bioc-biostrings_2.66.0-1_i386.buildinfo.asc
Thu Apr 27 07:40:14 UTC 2023  I: Submitting 12K	b2/r-bioc-biostrings_2.66.0-1_i386.buildinfo.asc
Thu Apr 27 07:40:15 UTC 2023  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Thu Apr 27 07:40:15 UTC 2023  I: Done submitting .buildinfo files.
Thu Apr 27 07:40:15 UTC 2023  I: Removing signed r-bioc-biostrings_2.66.0-1_i386.buildinfo.asc files:
removed './b1/r-bioc-biostrings_2.66.0-1_i386.buildinfo.asc'
removed './b2/r-bioc-biostrings_2.66.0-1_i386.buildinfo.asc'