Thu Apr 27 07:40:49 UTC 2023 I: starting to build r-bioc-affy/bookworm/i386 on jenkins on '2023-04-27 07:40' Thu Apr 27 07:40:49 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/8776/console.log Thu Apr 27 07:40:49 UTC 2023 I: Downloading source for bookworm/r-bioc-affy=1.76.0-1 --2023-04-27 07:40:50-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-affy/r-bioc-affy_1.76.0-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2153 (2.1K) [text/prs.lines.tag] Saving to: ‘r-bioc-affy_1.76.0-1.dsc’ 0K .. 100% 175M=0s 2023-04-27 07:40:50 (175 MB/s) - ‘r-bioc-affy_1.76.0-1.dsc’ saved [2153/2153] Thu Apr 27 07:40:50 UTC 2023 I: r-bioc-affy_1.76.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-bioc-affy Binary: r-bioc-affy Architecture: any Version: 1.76.0-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/affy/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-affy Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-affy.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r (>= 20210218), r-base-dev, r-bioc-biocgenerics, r-bioc-biobase, r-bioc-affyio, r-cran-biocmanager, r-bioc-preprocesscore, r-bioc-zlibbioc Package-List: r-bioc-affy deb gnu-r optional arch=any Checksums-Sha1: 523f9f183ccea4de9c9f2d6fcddee78e49724304 1215069 r-bioc-affy_1.76.0.orig.tar.gz 26b24f45d2b2ef2218161d60a655ab83371a137f 4884 r-bioc-affy_1.76.0-1.debian.tar.xz Checksums-Sha256: f28162f390369957f4bed64c535c64c1901be151c4642cf456065e45704d3dc6 1215069 r-bioc-affy_1.76.0.orig.tar.gz 95c52f7037956cc9f956c355db767c272da7c1caf76978dc3389feb4063fc5d7 4884 r-bioc-affy_1.76.0-1.debian.tar.xz Files: 53cbffc6730bbac4cd93bbd70fb87414 1215069 r-bioc-affy_1.76.0.orig.tar.gz 1db5b730e2f2e2d726ac03a55c4ce761 4884 r-bioc-affy_1.76.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN6lT4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEZbA//bEQYPimZLBzrhO8vy2NnQIpl8wmL0Bxm DKWQI4qUFThOK1+3+qc50JtGTx2fzhOPxozuTtDHaMWCWkyeErf6px26ymiA2/qy oYBofpAeWijmkCmVKdrzV9f7q7YdXV3gccgpoXWPV6nqYFFS8y4+/7pW8FXZTtKv gJ9YQdn79PckAjsJvsBtakTVlFvWqDwAxQ8a0K/UTAQUJN8mc7x3EC1XjRUi3F5b BF8qQJmRneL7Ia57ME5bDd4qAj1IfhLiOmykN/cMpvC/OKoULXX0/vlwa/jkyDGL SXCidkbCmAO2ufwSkTx6PxPEsjmXdZIVuRf77QS0nnlrDn4oWpcAAfgqmqgejYH9 vu2Aa2gC8zcYFUFkbBpWOLic25JtqKYiNRKh/VKU7gz54VUs7vtvvF/wAh/QMvSi 2GwjMb31QGm6cXUmb1pbSJbJFUwjoFCKDfDPTPUWboDzBDf9rUafescC3QQaWcsk DD8vnLYH4YFUyWlAPatBX7TpGaCVoIAuF/VP5WBLPzaO2uPTcAhbAAynoNaU5t7c YN8Ada8xkrStEhDHTL/RfkxpVNplqUwxjhrCDJbiwzPnQaqIN71fv9QCfN4y3JeP Y3dInvobapBQw+pVPEDAu9EIrOUqlbeXNc3Mt6GqpV1Haq9HlfMcf50UQnjqrcxl wslVAhBInQE= =i7Sl -----END PGP SIGNATURE----- Thu Apr 27 07:40:50 UTC 2023 I: Checking whether the package is not for us Thu Apr 27 07:40:50 UTC 2023 I: Starting 1st build on remote node ionos12-i386.debian.net. Thu Apr 27 07:40:50 UTC 2023 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Thu Apr 27 07:42:22 UTC 2023 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 26 19:40:52 -12 2023 I: pbuilder-time-stamp: 1682581252 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-affy_1.76.0-1.dsc] I: copying [./r-bioc-affy_1.76.0.orig.tar.gz] I: copying [./r-bioc-affy_1.76.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Nov 20 08:59:42 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-affy_1.76.0-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-affy in r-bioc-affy-1.76.0 dpkg-source: info: unpacking r-bioc-affy_1.76.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-affy_1.76.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14254/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='877a8059acd24008a20e38a6925799ad' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='14254' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qe7K07Zn/pbuilderrc_51y6 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qe7K07Zn/b1 --logfile b1/build.log r-bioc-affy_1.76.0-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/14254/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r (>= 20210218), r-base-dev, r-bioc-biocgenerics, r-bioc-biobase, r-bioc-affyio, r-cran-biocmanager, r-bioc-preprocesscore, r-bioc-zlibbioc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r (>= 20210218); however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-affyio; however: Package r-bioc-affyio is not installed. pbuilder-satisfydepends-dummy depends on r-cran-biocmanager; however: Package r-cran-biocmanager is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-preprocesscore; however: Package r-bioc-preprocesscore is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-zlibbioc; however: Package r-bioc-zlibbioc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-affyio{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-preprocesscore{a} r-bioc-zlibbioc{a} r-cran-biocmanager{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-biocversion r-cran-runit r-cran-testthat r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 103 MB of archives. After unpacking 312 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.8-1 [1412 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 26 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 zip i386 3.0-13 [236 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 unzip i386 6.0-28 [166 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libpaper1 i386 1.1.29 [12.7 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libpaper-utils i386 1.1.29 [8972 B] Get: 40 http://deb.debian.org/debian bookworm/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-4 [410 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-9 [420 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libthai-data all 0.1.29-1 [176 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libdatrie1 i386 0.2.13-2+b1 [45.0 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libthai0 i386 0.1.29-1 [58.6 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libpango-1.0-0 i386 1.50.12+ds-1 [220 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libpangoft2-1.0-0 i386 1.50.12+ds-1 [50.5 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libpangocairo-1.0-0 i386 1.50.12+ds-1 [35.4 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libtcl8.6 i386 8.6.13+dfsg-2 [1095 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libxft2 i386 2.3.6-1 [62.8 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libtk8.6 i386 8.6.13-2 [824 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 r-base-core i386 4.2.2.20221110-2 [26.1 MB] Get: 98 http://deb.debian.org/debian bookworm/main i386 libgfortran-12-dev i386 12.2.0-14 [761 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 gfortran-12 i386 12.2.0-14 [10.5 MB] Get: 100 http://deb.debian.org/debian bookworm/main i386 gfortran i386 4:12.2.0-3 [1432 B] Get: 101 http://deb.debian.org/debian bookworm/main i386 libblas-dev i386 3.11.0-2 [151 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 liblapack-dev i386 3.11.0-2 [4187 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 libncurses6 i386 6.4-2 [111 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libncurses-dev i386 6.4-2 [379 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libncurses5-dev i386 6.4-2 [932 B] Get: 106 http://deb.debian.org/debian bookworm/main i386 libreadline-dev i386 8.2-1.3 [164 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2 [304 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 libjpeg-dev i386 1:2.1.5-2 [71.8 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libpcre2-16-0 i386 10.42-1 [243 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 libpcre2-32-0 i386 10.42-1 [232 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 libpcre2-posix3 i386 10.42-1 [55.4 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 libpcre2-dev i386 10.42-1 [761 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 libpcre3 i386 2:8.39-15 [340 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 libpcre16-3 i386 2:8.39-15 [258 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 libpcre32-3 i386 2:8.39-15 [248 kB] Get: 116 http://deb.debian.org/debian bookworm/main i386 libpcrecpp0v5 i386 2:8.39-15 [144 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libpcre3-dev i386 2:8.39-15 [669 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 libpng-dev i386 1.6.39-2 [367 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 libbz2-dev i386 1.0.8-5+b1 [31.5 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 liblzma-dev i386 5.4.1-0.2 [272 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libxmuu1 i386 2:1.1.3-3 [24.1 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 xauth i386 1:1.1.2-1 [36.7 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 libpkgconf3 i386 1.8.1-1 [38.3 kB] Get: 127 http://deb.debian.org/debian bookworm/main i386 pkgconf-bin i386 1.8.1-1 [29.8 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 pkgconf i386 1.8.1-1 [25.9 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 pkg-config i386 1.8.1-1 [13.7 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 r-base-dev all 4.2.2.20221110-2 [4492 B] Get: 131 http://deb.debian.org/debian bookworm/main i386 libfile-which-perl all 1.27-2 [15.1 kB] Get: 132 http://deb.debian.org/debian bookworm/main i386 libswitch-perl all 2.17-3 [20.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main i386 libclone-perl i386 0.46-1 [13.8 kB] Get: 134 http://deb.debian.org/debian bookworm/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 libhttp-date-perl all 6.05-2 [10.5 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 138 http://deb.debian.org/debian bookworm/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main i386 libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 140 http://deb.debian.org/debian bookworm/main i386 liburi-perl all 5.17-1 [90.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main i386 libhttp-message-perl all 6.44-1 [81.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main i386 libparams-util-perl i386 1.102-2+b1 [25.0 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 libsub-install-perl all 0.929-1 [10.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main i386 libdata-optlist-perl all 0.113-1 [10.6 kB] Get: 145 http://deb.debian.org/debian bookworm/main i386 libb-hooks-op-check-perl i386 0.22-2+b1 [10.6 kB] Get: 146 http://deb.debian.org/debian bookworm/main i386 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main i386 libdevel-callchecker-perl i386 0.008-2 [15.8 kB] Get: 148 http://deb.debian.org/debian bookworm/main i386 libparams-classify-perl i386 0.015-2+b1 [23.7 kB] Get: 149 http://deb.debian.org/debian bookworm/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 150 http://deb.debian.org/debian bookworm/main i386 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 151 http://deb.debian.org/debian bookworm/main i386 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 152 http://deb.debian.org/debian bookworm/main i386 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 153 http://deb.debian.org/debian bookworm/main i386 libclass-load-perl all 0.25-2 [15.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main i386 libclass-load-xs-perl i386 0.10-2+b1 [14.1 kB] Get: 155 http://deb.debian.org/debian bookworm/main i386 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 156 http://deb.debian.org/debian bookworm/main i386 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 157 http://deb.debian.org/debian bookworm/main i386 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 158 http://deb.debian.org/debian bookworm/main i386 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 159 http://deb.debian.org/debian bookworm/main i386 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 160 http://deb.debian.org/debian bookworm/main i386 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 161 http://deb.debian.org/debian bookworm/main i386 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 162 http://deb.debian.org/debian bookworm/main i386 libsub-exporter-perl all 0.989-1 [50.5 kB] Get: 163 http://deb.debian.org/debian bookworm/main i386 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 164 http://deb.debian.org/debian bookworm/main i386 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 165 http://deb.debian.org/debian bookworm/main i386 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 166 http://deb.debian.org/debian bookworm/main i386 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 167 http://deb.debian.org/debian bookworm/main i386 libpackage-stash-xs-perl i386 0.30-1+b1 [20.2 kB] Get: 168 http://deb.debian.org/debian bookworm/main i386 libmoose-perl i386 2.2203-1 [795 kB] Get: 169 http://deb.debian.org/debian bookworm/main i386 libvariable-magic-perl i386 0.63-1+b1 [44.5 kB] Get: 170 http://deb.debian.org/debian bookworm/main i386 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get: 171 http://deb.debian.org/debian bookworm/main i386 libsub-identify-perl i386 0.14-3 [10.9 kB] Get: 172 http://deb.debian.org/debian bookworm/main i386 libsub-name-perl i386 0.26-2+b1 [12.7 kB] Get: 173 http://deb.debian.org/debian bookworm/main i386 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 174 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB] Get: 175 http://deb.debian.org/debian bookworm/main i386 libwww-curl-perl i386 4.17-10 [62.0 kB] Get: 176 http://deb.debian.org/debian bookworm/main i386 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 177 http://deb.debian.org/debian bookworm/main i386 dh-r all 20230121 [37.9 kB] Get: 178 http://deb.debian.org/debian bookworm/main i386 r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get: 179 http://deb.debian.org/debian bookworm/main i386 r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B] Get: 180 http://deb.debian.org/debian bookworm/main i386 r-bioc-affyio i386 1.68.0-1 [92.6 kB] Get: 181 http://deb.debian.org/debian bookworm/main i386 r-bioc-biobase i386 2.58.0-2 [2113 kB] Get: 182 http://deb.debian.org/debian bookworm/main i386 r-bioc-preprocesscore i386 1.60.2+ds-1 [157 kB] Get: 183 http://deb.debian.org/debian bookworm/main i386 r-cran-biocmanager all 1.30.20+dfsg-1 [126 kB] Fetched 103 MB in 2s (46.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.8-1_i386.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../005-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. 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Unpacking libpackage-stash-xs-perl:i386 (0.30-1+b1) ... Selecting previously unselected package libmoose-perl:i386. Preparing to unpack .../167-libmoose-perl_2.2203-1_i386.deb ... Unpacking libmoose-perl:i386 (2.2203-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../168-libvariable-magic-perl_0.63-1+b1_i386.deb ... Unpacking libvariable-magic-perl (0.63-1+b1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../169-libb-hooks-endofscope-perl_0.26-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.26-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../170-libsub-identify-perl_0.14-3_i386.deb ... Unpacking libsub-identify-perl (0.14-3) ... Selecting previously unselected package libsub-name-perl:i386. Preparing to unpack .../171-libsub-name-perl_0.26-2+b1_i386.deb ... Unpacking libsub-name-perl:i386 (0.26-2+b1) ... 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Unpacking r-bioc-biocgenerics (0.44.0-2) ... Selecting previously unselected package r-bioc-zlibbioc. Preparing to unpack .../178-r-bioc-zlibbioc_1.44.0+dfsg-1_all.deb ... Unpacking r-bioc-zlibbioc (1.44.0+dfsg-1) ... Selecting previously unselected package r-bioc-affyio. Preparing to unpack .../179-r-bioc-affyio_1.68.0-1_i386.deb ... Unpacking r-bioc-affyio (1.68.0-1) ... Selecting previously unselected package r-bioc-biobase. Preparing to unpack .../180-r-bioc-biobase_2.58.0-2_i386.deb ... Unpacking r-bioc-biobase (2.58.0-2) ... Selecting previously unselected package r-bioc-preprocesscore. Preparing to unpack .../181-r-bioc-preprocesscore_1.60.2+ds-1_i386.deb ... Unpacking r-bioc-preprocesscore (1.60.2+ds-1) ... Selecting previously unselected package r-cran-biocmanager. Preparing to unpack .../182-r-cran-biocmanager_1.30.20+dfsg-1_all.deb ... Unpacking r-cran-biocmanager (1.30.20+dfsg-1) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libgraphite2-3:i386 (1.3.14-1) ... Setting up libpixman-1-0:i386 (0.42.2-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libicu72:i386 (72.1-3) ... Setting up liblerc4:i386 (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libpcre16-3:i386 (2:8.39-15) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libdatrie1:i386 (0.2.13-2+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libclone-perl:i386 (0.46-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libglib2.0-0:i386 (2.74.6-2) ... No schema files found: doing nothing. Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up libdeflate0:i386 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.44-3) ... Setting up libjbig0:i386 (2.1-6.1) ... Setting up libpcre2-16-0:i386 (10.42-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up libpcre3:i386 (2:8.39-15) ... Setting up zip (3.0-13) ... Setting up libpackage-stash-xs-perl:i386 (0.30-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:i386 (10.42-1) ... Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libpkgconf3:i386 (1.8.1-1) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:i386 (6.4-2) ... Setting up libfribidi0:i386 (1.0.8-2.1) ... Setting up libpng16-16:i386 (1.6.39-2) ... Setting up libpcre32-3:i386 (2:8.39-15) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:i386 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up libb-hooks-op-check-perl:i386 (0.22-2+b1) ... Setting up icu-devtools (72.1-3) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:i386 (1.2.4-0.1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up liblzma-dev:i386 (5.4.1-0.2) ... Setting up libsub-name-perl:i386 (0.26-2+b1) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up libpcre2-posix3:i386 (10.42-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:i386 (4.5.0-5) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up openssl (3.0.8-1) ... Setting up libbsd0:i386 (0.11.7-2) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libicu-dev:i386 (72.1-3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.17-1) ... Setting up libblas-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libbz2-dev:i386 (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpcrecpp0v5:i386 (2:8.39-15) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:i386 (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libncurses-dev:i386 (6.4-2) ... Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libpcre2-dev:i386 (10.42-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up libpcre3-dev:i386 (2:8.39-15) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libpng-dev:i386 (1.6.39-2) ... Setting up libjpeg-dev:i386 (1:2.1.5-2) ... Setting up libgfortran-12-dev:i386 (12.2.0-14) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:i386 (8.2-1.3) ... Setting up libdevel-callchecker-perl:i386 (0.008-2) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up pkgconf:i386 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:i386 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up gfortran-12 (12.2.0-14) ... Setting up libfreetype6:i386 (2.12.1+dfsg-4) ... Setting up liblapack-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.113-1) ... Setting up pkg-config:i386 (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libncurses5-dev:i386 (6.4-2) ... Setting up libcurl4:i386 (7.88.1-9) ... Setting up libx11-6:i386 (2:1.8.4-2) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up libfontconfig1:i386 (2.14.1-4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libxmuu1:i386 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:i386 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:i386 (0.015-2+b1) ... Setting up libpango-1.0-0:i386 (1.50.12+ds-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:i386 (7.88.1-9) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:i386 (1.16.0-7) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:i386 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:i386 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:i386 (1.50.12+ds-1) ... Setting up libxft2:i386 (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:i386 (8.6.13-2) ... Setting up libwww-curl-perl:i386 (4.17-10) ... Setting up debhelper (13.11.4) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.2.2.20221110-2) ... Creating config file /etc/R/Renviron with new version Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-bioc-biocgenerics (0.44.0-2) ... Setting up r-base-dev (4.2.2.20221110-2) ... Setting up libmoose-perl:i386 (2.2203-1) ... Setting up r-cran-biocmanager (1.30.20+dfsg-1) ... Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ... Setting up r-bioc-biobase (2.58.0-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-preprocesscore (1.60.2+ds-1) ... Setting up r-bioc-affyio (1.68.0-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20230121) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-bioc-affy-1.76.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-affy_1.76.0-1_source.changes dpkg-buildpackage: info: source package r-bioc-affy dpkg-buildpackage: info: source version 1.76.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:24: warning: The macro `AC_TRY_RUN' is obsolete. configure.in:24: You should run autoupdate. ./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/headers.m4:89: _AC_CHECK_HEADER_COMPILE is expanded from... ./lib/autoconf/headers.m4:56: AC_CHECK_HEADER is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/libs.m4:100: AC_CHECK_LIB is expanded from... aclocal.m4:6: R_ZLIB is expanded from... configure.in:24: the top level configure.in:27: warning: AC_OUTPUT should be used without arguments. configure.in:27: You should run autoupdate. dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-affy/ -O--buildsystem=R I: R Package: affy Version: 1.76.0 I: Building using R version 4.2.2.20221110-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 20 Nov 2022 21:15:09 +0100 mkdir -p /build/r-bioc-affy-1.76.0/debian/r-bioc-affy/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-affy-1.76.0/debian/r-bioc-affy/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 20 Nov 2022 21:15:09 +0100'" * installing *source* package 'affy' ... ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes configure: creating ./config.status config.status: creating src/Makevars ** libs make[1]: Entering directory '/build/r-bioc-affy-1.76.0/src' gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_ZLIB=1 -I'/usr/lib/R/site-library/preprocessCore/include' -g -O2 -ffile-prefix-map=/build/r-bioc-affy-1.76.0=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -c chipbackground.c -o chipbackground.o gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_ZLIB=1 -I'/usr/lib/R/site-library/preprocessCore/include' -g -O2 -ffile-prefix-map=/build/r-bioc-affy-1.76.0=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -c getall_locations.c -o getall_locations.o gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_ZLIB=1 -I'/usr/lib/R/site-library/preprocessCore/include' -g -O2 -ffile-prefix-map=/build/r-bioc-affy-1.76.0=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -c mas5calls.c -o mas5calls.o gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_ZLIB=1 -I'/usr/lib/R/site-library/preprocessCore/include' -g -O2 -ffile-prefix-map=/build/r-bioc-affy-1.76.0=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -c rma2.c -o rma2.o gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_ZLIB=1 -I'/usr/lib/R/site-library/preprocessCore/include' -g -O2 -ffile-prefix-map=/build/r-bioc-affy-1.76.0=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -c rma_common.c -o rma_common.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-bioc-affy-1.76.0/src' make[1]: Entering directory '/build/r-bioc-affy-1.76.0/src' make[1]: Leaving directory '/build/r-bioc-affy-1.76.0/src' installing to /build/r-bioc-affy-1.76.0/debian/r-bioc-affy/usr/lib/R/site-library/00LOCK-r-bioc-affy-1.76.0/00new/affy/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affy) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. W: Ignoring specified R dependency: R (>= 2.8.0) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.1.12) I: Using r-bioc-biobase for Depends:Biobase (>= 2.5.5) W: Cannot find a debian package for Suggests:tkWidgets (>= 1.19.0) W: Cannot find a debian package for Suggests:affydata W: Cannot find a debian package for Suggests:widgetTools I: Using r-bioc-affyio for Imports:affyio (>= 1.13.3) I: Using r-cran-biocmanager for Imports:BiocManager I: Using r-bioc-preprocesscore for Imports:preprocessCore I: Using r-bioc-zlibbioc for Imports:zlibbioc I: Using r-bioc-preprocesscore for LinkingTo:preprocessCore I: BioConductor API version: r-api-bioc-3.16 I: Use r-bioc-affy as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-affy-dbgsym' in '../r-bioc-affy-dbgsym_1.76.0-1_i386.deb'. dpkg-deb: building package 'r-bioc-affy' in '../r-bioc-affy_1.76.0-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-affy_1.76.0-1_i386.buildinfo dpkg-genchanges --build=binary -O../r-bioc-affy_1.76.0-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14254 and its subdirectories I: Current time: Wed Apr 26 19:42:21 -12 2023 I: pbuilder-time-stamp: 1682581341 Thu Apr 27 07:42:22 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Thu Apr 27 07:42:22 UTC 2023 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Thu Apr 27 07:43:06 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. Thu Apr 27 07:43:07 UTC 2023 I: r-bioc-affy_1.76.0-1_i386.changes: Format: 1.8 Date: Sun, 20 Nov 2022 21:15:09 +0100 Source: r-bioc-affy Binary: r-bioc-affy r-bioc-affy-dbgsym Architecture: i386 Version: 1.76.0-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-affy - BioConductor methods for Affymetrix Oligonucleotide Arrays Changes: r-bioc-affy (1.76.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 6f61a16a5d0d9b02f8d03a048ccc38504f165f5f 29428 r-bioc-affy-dbgsym_1.76.0-1_i386.deb 9246bcdb04bf072262daa9f7fd27960b6cd2f10c 9998 r-bioc-affy_1.76.0-1_i386.buildinfo 913b823f127c10721ae73bb3865e01cb41e6ab4f 1332520 r-bioc-affy_1.76.0-1_i386.deb Checksums-Sha256: 73c8b826b09bf2ea68d0c716f95adb9c387c409cff57b997b51d22c94d257fc4 29428 r-bioc-affy-dbgsym_1.76.0-1_i386.deb b3e841517050716cc026c1948111d84c88138ad32f3169b2b321c713bd382f11 9998 r-bioc-affy_1.76.0-1_i386.buildinfo 2cebf419a7fbc527f6d4bb131c339a59e3443292705ec10bf339f6b4f1b58af6 1332520 r-bioc-affy_1.76.0-1_i386.deb Files: b39f848e15a83ef47c305fe03d49aa2d 29428 debug optional r-bioc-affy-dbgsym_1.76.0-1_i386.deb a76ee86577e1803c4964a231b92509f5 9998 gnu-r optional r-bioc-affy_1.76.0-1_i386.buildinfo e98bd0300d3e2097ad9783ec6d998fc4 1332520 gnu-r optional r-bioc-affy_1.76.0-1_i386.deb Thu Apr 27 07:43:08 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Qe7K07Zn/r-bioc-affy_1.76.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Qe7K07Zn/r-bioc-affy_1.76.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Qe7K07Zn/r-bioc-affy_1.76.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Qe7K07Zn/b1/r-bioc-affy_1.76.0-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.Qe7K07Zn/b2/r-bioc-affy_1.76.0-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.336s) 0.336s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Apr 27 07:43:09 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 27 07:43:09 UTC 2023 I: r-bioc-affy from bookworm built successfully and reproducibly on i386. Thu Apr 27 07:43:10 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 27 07:43:10 UTC 2023 I: Submitting 12K b1/r-bioc-affy_1.76.0-1_i386.buildinfo.asc Thu Apr 27 07:43:11 UTC 2023 I: Submitting 12K b2/r-bioc-affy_1.76.0-1_i386.buildinfo.asc Thu Apr 27 07:43:12 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 27 07:43:12 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 27 07:43:12 UTC 2023 I: Removing signed r-bioc-affy_1.76.0-1_i386.buildinfo.asc files: removed './b1/r-bioc-affy_1.76.0-1_i386.buildinfo.asc' removed './b2/r-bioc-affy_1.76.0-1_i386.buildinfo.asc'