Wed May 1 01:03:08 UTC 2024 I: starting to build q2-dada2/bookworm/i386 on jenkins on '2024-05-01 01:02' Wed May 1 01:03:08 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/22994/console.log Wed May 1 01:03:08 UTC 2024 I: Downloading source for bookworm/q2-dada2=2022.11.2-2 --2024-05-01 01:03:08-- http://cdn-fastly.deb.debian.org/debian/pool/main/q/q2-dada2/q2-dada2_2022.11.2-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2094 (2.0K) [text/prs.lines.tag] Saving to: ‘q2-dada2_2022.11.2-2.dsc’ 0K .. 100% 255M=0s 2024-05-01 01:03:08 (255 MB/s) - ‘q2-dada2_2022.11.2-2.dsc’ saved [2094/2094] Wed May 1 01:03:08 UTC 2024 I: q2-dada2_2022.11.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: q2-dada2 Binary: q2-dada2 Architecture: any Version: 2022.11.2-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://qiime2.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/q2-dada2 Vcs-Git: https://salsa.debian.org/med-team/q2-dada2.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest-cov Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, qiime (>= 2022.11.1), r-bioc-dada2 Package-List: q2-dada2 deb science optional arch=any Checksums-Sha1: 3efe856c940408d36f4672fbc37c01fbf0b23cbb 2235897 q2-dada2_2022.11.2.orig.tar.gz f38acad9d912246ec31787748de5f0701813fd9a 5744 q2-dada2_2022.11.2-2.debian.tar.xz Checksums-Sha256: 59c9c718163b04b816bc876e19e5129a948f97286426b68eae9f7e78b42195d9 2235897 q2-dada2_2022.11.2.orig.tar.gz eac5898d235b7946b8c989502d558820dbae9286088be4076208b7d6d5eda623 5744 q2-dada2_2022.11.2-2.debian.tar.xz Files: e2a8325c7367b177c8fed386dca610ac 2235897 q2-dada2_2022.11.2.orig.tar.gz 9562df5fee2aaff334f5923696f5108b 5744 q2-dada2_2022.11.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPQGacRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGv2BAAiM7mLSI5NloBwcUiBrJ/1k9mhiUDmlHL QGkiv9bh8VbdpZSliOsunNtQAOT8pU3FFQ7aNkS4bW1R8Wacm5qNKSgSokOChtV8 bGwIPoulHbXvM9mI8LkUGPPkKcX7lA3in5uv1p8jG6OoX12CzJ/Ho/zIHV3loZAv Yv+w7+1Qepx5EEcvwCDWHxd/RoNqkj7qV0tkJaxCVNbFDw63FWCmyMMk3Im6lQiP 14C8WdmSpuvvhR9XmTWPXTHo3GGmQasD+Oc7nGeF/WSnS/Guf9KFDsFVbaab7AY7 0624CiL58X4pmWIZ9vz4QpbVdOnB6aeTokQhjUObe0pyIwKqMabqw5AOg3tTimZt 6q0iWDKxzYkRT5Q7Fuvkt8ixamr0q9c4VXyZ39F65qzVDBhBLrDHDmCL6UKGhotD 1oT33yxIVUII6zRPJ6KNG+ldr3NXl/nM88uaT/wZtEH4KeTB7hyXKhW30/XkE38Q r3+zss1bONPWh263TjvgMnvkcBuXdgzD6sYgZVLEleED2oxMu20pSzXUNFYpO7tV 0uZsHPC/FIZyELBG5v79/qCJrbM9VeNH3wuRYX2u4ChYifYMheD3+8bj5cYgjv8w pPE3B1MYesuYVbo1PoFj0HkjykWIDBuSciHAZiX6yEmGee/Y0f2vLnnKa9Yf5NEP /E3JlEmNC3Q= =8Gl1 -----END PGP SIGNATURE----- Wed May 1 01:03:08 UTC 2024 I: Checking whether the package is not for us Wed May 1 01:03:08 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Wed May 1 01:03:08 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Wed May 1 01:03:29 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 2 19:26:10 -12 2025 I: pbuilder-time-stamp: 1748935570 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [q2-dada2_2022.11.2-2.dsc] I: copying [./q2-dada2_2022.11.2.orig.tar.gz] I: copying [./q2-dada2_2022.11.2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jan 24 05:47:19 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2-dada2_2022.11.2-2.dsc: no acceptable signature found dpkg-source: info: extracting q2-dada2 in q2-dada2-2022.11.2 dpkg-source: info: unpacking q2-dada2_2022.11.2.orig.tar.gz dpkg-source: info: unpacking q2-dada2_2022.11.2-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/36286/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='43a69ab29e3f463096c44974394fde72' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='36286' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PhNOpwpb/pbuilderrc_WgBk --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PhNOpwpb/b1 --logfile b1/build.log q2-dada2_2022.11.2-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Jan 19 2024 tar -rwxr-xr-x 1 root root 13860 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/36286/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, qiime (>= 2022.11.1), r-bioc-dada2 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19563 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2022.11.1); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dada2; however: Package r-bioc-dada2 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-bibtexparser{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-distutils{a} python3-flufl.lock{a} python3-future{a} python3-lib2to3{a} python3-minimal{a} python3-networkx{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-psutil{a} python3-public{a} python3-pyparsing{a} python3-pytz-deprecation-shim{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3-tzlocal{a} python3-yaml{a} python3.11{a} python3.11-minimal{a} qiime{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-gdal python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pydot python3-pygraphviz python3-scipy python3-tables q2-demux q2-feature-classifier q2-feature-table q2-quality-filter q2-types q2cli q2templates wget 0 packages upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 44.6 MB of archives. After unpacking 201 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-dada2 which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-bibtexparser{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-distutils{a} python3-flufl.lock{a} python3-future{a} python3-lib2to3{a} python3-minimal{a} python3-networkx{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-psutil{a} python3-public{a} python3-pyparsing{a} python3-pytz-deprecation-shim{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3-tzlocal{a} python3-yaml{a} python3.11{a} python3.11-minimal{a} qiime{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-gdal python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pydot python3-pygraphviz python3-scipy python3-tables q2-demux q2-feature-classifier q2-feature-table q2-quality-filter q2-types q2cli q2templates wget 0 packages upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 44.6 MB of archives. After unpacking 201 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/36286 and its subdirectories Wed May 1 01:03:30 UTC 2024 W: No second build log, what happened? Wed May 1 01:03:30 UTC 2024 W: Downloading the build dependencies failed Wed May 1 01:03:30 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Wed May 1 01:03:30 UTC 2024 W: Network problems are automatically rescheduled after some hours.