Fri Apr 28 08:56:33 UTC 2023 I: starting to build python-geneimpacts/bookworm/i386 on jenkins on '2023-04-28 08:56' Fri Apr 28 08:56:33 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_9/11910/console.log Fri Apr 28 08:56:33 UTC 2023 I: Downloading source for bookworm/python-geneimpacts=0.3.7-4 --2023-04-28 08:56:33-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-geneimpacts/python-geneimpacts_0.3.7-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2206 (2.2K) [text/prs.lines.tag] Saving to: ‘python-geneimpacts_0.3.7-4.dsc’ 0K .. 100% 140M=0s 2023-04-28 08:56:33 (140 MB/s) - ‘python-geneimpacts_0.3.7-4.dsc’ saved [2206/2206] Fri Apr 28 08:56:33 UTC 2023 I: python-geneimpacts_0.3.7-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-geneimpacts Binary: python3-geneimpacts Architecture: all Version: 0.3.7-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/brentp/geneimpacts Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/python-geneimpacts Vcs-Git: https://salsa.debian.org/med-team/python-geneimpacts.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-pytest Package-List: python3-geneimpacts deb python optional arch=all Checksums-Sha1: e301df0095872c0c1940ca39eca067de1b53ee97 33689 python-geneimpacts_0.3.7.orig.tar.gz 60d23281c687a9f19cdb14b88453e1024c117982 3040 python-geneimpacts_0.3.7-4.debian.tar.xz Checksums-Sha256: 895a0aa64935bf8528257fc5a3747c09adbf30c4885d95b0fa69ba4bb858c133 33689 python-geneimpacts_0.3.7.orig.tar.gz 942b1a1b81a5eb8209fa36e82cafc89e3697f803157d0fb7cbd5741ee77cae68 3040 python-geneimpacts_0.3.7-4.debian.tar.xz Files: bdf1a1693ca1b5557a9765d1f39ba2e0 33689 python-geneimpacts_0.3.7.orig.tar.gz 572e7444d79f167066f062d4c573ceed 3040 python-geneimpacts_0.3.7-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmG93A8SHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nx0u0P/0oLXCITB0UXPXLs3B2x1MJh4mKQY9bc HH9BoIl3a+gkMPQeBQGrIGbiSqswo7njnse0HNVsHAB1MsYvcWGVTJhDdjAQ6CJT pNJggYXdhMye95tKT5EVgmNUnpHUOxJcL6+GfhKGxATIf14zMbeIF2USBwDBFusQ B3T9f92mWTj2PFyjG8ywCH0EQrhKpQwuK2ElOPYM2cAk5UTlI1UwpQuo9z7ijm4D HWzkNBl6H8BkgBrm7OjLjgd01XJgeBRwZbxeSF3e2n9W6/7sRTaUJVtSTTtoFP3q oHrksCqOvmA+xRn0Z+a6hQRZwl1znPNDaH/2asksomcZU8xc4zlF7DE/e2NTKX5e gWAytFOEZfP2LoC7dZV9rLlltAEsfiMhEIBUcfJ62ZXaBOT0wVCMg7a0gTrWBUCb mmmQvr5stLZotYtOATD/FKuHi4O9s0U/6DXmFgOp3Ny+btI4A+4wApziiSEISEB2 bd0oeg7S9nZtuO0KGKPwHj317BMFD7eGg9YP5Zp4C1qgZK494iPtdrcU/9ovhoz1 z6PJ1a0eXTNx0u7BUzmpuIIygd0xku2/uSOvsIaisAGaEDKpsIVvsFzD4LtNno+F VDUF2JbFVQwNf+/j++iGe95YwCVJcwTdoDfyrOkjX7No5i10pZxoAwtmR1XLre3q YY+o/ScU4xPd =GKh0 -----END PGP SIGNATURE----- Fri Apr 28 08:56:33 UTC 2023 I: Checking whether the package is not for us Fri Apr 28 08:56:33 UTC 2023 I: Starting 1st build on remote node ionos2-i386.debian.net. Fri Apr 28 08:56:33 UTC 2023 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Fri Apr 28 08:57:12 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 27 20:56:35 -12 2023 I: pbuilder-time-stamp: 1682672195 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-geneimpacts_0.3.7-4.dsc] I: copying [./python-geneimpacts_0.3.7.orig.tar.gz] I: copying [./python-geneimpacts_0.3.7-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 18 01:03:11 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-geneimpacts_0.3.7-4.dsc: no acceptable signature found dpkg-source: info: extracting python-geneimpacts in python-geneimpacts-0.3.7 dpkg-source: info: unpacking python-geneimpacts_0.3.7.orig.tar.gz dpkg-source: info: unpacking python-geneimpacts_0.3.7-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying port-to-pytest.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/31004/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e9b64a8e150b41d58513c620bef97a75' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='31004' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b3C3w62M/pbuilderrc_QRbY --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b3C3w62M/b1 --logfile b1/build.log python-geneimpacts_0.3.7-4.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/31004/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 26.4 MB of archives. After unpacking 103 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-2 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B] Get: 46 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 48 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Fetched 26.4 MB in 1s (43.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19920 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../3-libreadline8_8.2-1.3_i386.deb ... Unpacking libreadline8:i386 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_i386.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20354 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../03-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../23-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../25-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../31-python3-lib2to3_3.11.2-2_all.deb ... Unpacking python3-lib2to3 (3.11.2-2) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../32-python3-distutils_3.11.2-2_all.deb ... Unpacking python3-distutils (3.11.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../33-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package python3-all. Preparing to unpack .../34-python3-all_3.11.2-1+b1_i386.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../35-python3-attr_22.2.0-1_all.deb ... Unpacking python3-attr (22.2.0-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../36-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../37-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../38-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../39-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../40-python3-pluggy_1.0.0+repack-1_all.deb ... Unpacking python3-pluggy (1.0.0+repack-1) ... Selecting previously unselected package python3-py. Preparing to unpack .../41-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../42-python3-pytest_7.2.1-2_all.deb ... Unpacking python3-pytest (7.2.1-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../43-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libicu72:i386 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-geneimpacts-0.3.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-geneimpacts_0.3.7-4_source.changes dpkg-buildpackage: info: source package python-geneimpacts dpkg-buildpackage: info: source version 0.3.7-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from python-geneimpacts-0.3.7/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-geneimpacts.substvars debian/files rm -fr -- debian/python3-geneimpacts/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.11 I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts copying geneimpacts/effect.py -> /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts copying geneimpacts/__init__.py -> /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts creating /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests copying geneimpacts/tests/test_impacts.py -> /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests copying geneimpacts/tests/__init__.py -> /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests running egg_info creating geneimpacts.egg-info writing geneimpacts.egg-info/PKG-INFO writing dependency_links to geneimpacts.egg-info/dependency_links.txt writing top-level names to geneimpacts.egg-info/top_level.txt writing manifest file 'geneimpacts.egg-info/SOURCES.txt' reading manifest file 'geneimpacts.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'geneimpacts.egg-info/SOURCES.txt' copying geneimpacts/tests/bcfts.txt.gz -> /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests copying geneimpacts/tests/snpeff-anns.txt.gz -> /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests copying geneimpacts/tests/vep-csqs.txt.gz -> /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.11 I: pybuild base:240: cd /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/python-geneimpacts-0.3.7 collected 24 items geneimpacts/tests/test_impacts.py ........................ [100%] =============================== warnings summary =============================== geneimpacts/effect.py:603 /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/effect.py:603: DeprecationWarning: invalid escape sequence '\|' def __init__(self, effect_string, keys=None, _patt=re.compile("\||\("), -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 24 passed, 1 warning in 0.19s ========================= rm -fr -- /tmp/dh-xdg-rundir-7vTFtSSS create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-geneimpacts.substvars rm -fr -- debian/.debhelper/generated/python3-geneimpacts/ debian/python3-geneimpacts/ debian/tmp/ dh_auto_install --destdir=debian/python3-geneimpacts/ -O--buildsystem=pybuild install -m0755 -d /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts pybuild --install -i python{version} -p 3.11 --dest-dir /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing geneimpacts.egg-info/PKG-INFO writing dependency_links to geneimpacts.egg-info/dependency_links.txt writing top-level names to geneimpacts.egg-info/top_level.txt reading manifest file 'geneimpacts.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'geneimpacts.egg-info/SOURCES.txt' running install_lib creating /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr creating /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib creating /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11 creating /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages creating /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts creating /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/__pycache__ copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/__pycache__/__init__.cpython-311.pyc -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/__pycache__ copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/__pycache__/effect.cpython-311.pyc -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/__pycache__ creating /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests/vep-csqs.txt.gz -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests creating /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests/__pycache__ copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests/__pycache__/test_impacts.cpython-311-pytest-7.2.1.pyc -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests/__pycache__ copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests/__pycache__/__init__.cpython-311.pyc -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests/__pycache__ copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests/test_impacts.py -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests/snpeff-anns.txt.gz -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests/bcfts.txt.gz -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/tests/__init__.py -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/effect.py -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts copying /build/python-geneimpacts-0.3.7/.pybuild/cpython3_3.11_geneimpacts/build/geneimpacts/__init__.py -> /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts byte-compiling /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests/test_impacts.py to test_impacts.cpython-311.pyc byte-compiling /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/effect.py to effect.cpython-311.pyc byte-compiling /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts/__init__.py to __init__.cpython-311.pyc running install_egg_info Copying geneimpacts.egg-info to /build/python-geneimpacts-0.3.7/debian/python3-geneimpacts/usr/lib/python3.11/dist-packages/geneimpacts-0.3.7.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-geneimpacts/usr/share/doc/python3-geneimpacts install -p -m0644 debian/copyright debian/python3-geneimpacts/usr/share/doc/python3-geneimpacts/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-geneimpacts/usr/share/doc/python3-geneimpacts install -p -m0644 debian/.debhelper/generated/python3-geneimpacts/dh_installchangelogs.dch.trimmed debian/python3-geneimpacts/usr/share/doc/python3-geneimpacts/changelog.Debian install -p -m0644 ./CHANGES.md debian/python3-geneimpacts/usr/share/doc/python3-geneimpacts/changelog dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 5.20230130 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11) D: dh_python3 debhelper:183: source=python-geneimpacts, binary packages=['python3-geneimpacts'] D: dh_python3 dh_python3:204: processing package python3-geneimpacts... D: dh_python3 fs:52: moving files from debian/python3-geneimpacts/usr/lib/python3.11/dist-packages to debian/python3-geneimpacts/usr/lib/python3/dist-packages/ D: dh_python3 fs:400: package python3-geneimpacts details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-geneimpacts D: dh_python3 depends:281: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild Using 1639832301 as canonical time Normalizing debian/python3-geneimpacts/usr/lib/python3/dist-packages/geneimpacts/tests/vep-csqs.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-geneimpacts/usr/lib/python3/dist-packages/geneimpacts/tests/snpeff-anns.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-geneimpacts/usr/lib/python3/dist-packages/geneimpacts/tests/bcfts.txt.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-geneimpacts chmod a-x usr/share/doc/python3-geneimpacts/changelog usr/share/doc/python3-geneimpacts/changelog.Debian gzip -9nf usr/share/doc/python3-geneimpacts/changelog usr/share/doc/python3-geneimpacts/changelog.Debian cd '/build/python-geneimpacts-0.3.7' dh_fixperms -O--buildsystem=pybuild find debian/python3-geneimpacts ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-geneimpacts/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-geneimpacts/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-geneimpacts/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-geneimpacts -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-geneimpacts/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-geneimpacts/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-geneimpacts/DEBIAN/postinst cat debian/python3-geneimpacts.postinst.debhelper >> debian/python3-geneimpacts/DEBIAN/postinst chmod 0755 -- debian/python3-geneimpacts/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-geneimpacts/DEBIAN/prerm cat debian/python3-geneimpacts.prerm.debhelper >> debian/python3-geneimpacts/DEBIAN/prerm chmod 0755 -- debian/python3-geneimpacts/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-geneimpacts/DEBIAN echo misc:Depends= >> debian/python3-geneimpacts.substvars echo misc:Pre-Depends= >> debian/python3-geneimpacts.substvars dpkg-gencontrol -ppython3-geneimpacts -ldebian/changelog -Tdebian/python3-geneimpacts.substvars -Pdebian/python3-geneimpacts chmod 0644 -- debian/python3-geneimpacts/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-geneimpacts/DEBIAN cd debian/python3-geneimpacts >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-geneimpacts/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-geneimpacts .. dpkg-deb: building package 'python3-geneimpacts' in '../python3-geneimpacts_0.3.7-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-geneimpacts_0.3.7-4_i386.buildinfo dpkg-genchanges --build=binary -O../python-geneimpacts_0.3.7-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-geneimpacts-0.3.7/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31004 and its subdirectories I: Current time: Thu Apr 27 20:57:11 -12 2023 I: pbuilder-time-stamp: 1682672231 Fri Apr 28 08:57:12 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Fri Apr 28 08:57:12 UTC 2023 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Fri Apr 28 08:57:38 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. Fri Apr 28 08:57:38 UTC 2023 I: python-geneimpacts_0.3.7-4_i386.changes: Format: 1.8 Date: Sat, 18 Dec 2021 18:28:21 +0530 Source: python-geneimpacts Binary: python3-geneimpacts Architecture: all Version: 0.3.7-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-geneimpacts - wraps command line tools to assess variants in gene sequences Changes: python-geneimpacts (0.3.7-4) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * Fix syntax * Fix VCS fields . [ Nilesh Patra ] * Switch from nosetest -> pytest * Bump Standards-Version to 4.6.0 (no changes needed) Checksums-Sha1: 6a5912b95e17f046fdafb5020084880b9704110d 5679 python-geneimpacts_0.3.7-4_i386.buildinfo 8ffed736fe73fcc2e5107858eed60e46e681c2bc 33708 python3-geneimpacts_0.3.7-4_all.deb Checksums-Sha256: 239140ef62e68a8b45878bc0724e5a62e62a177eba987756501a7385b1b8b5f1 5679 python-geneimpacts_0.3.7-4_i386.buildinfo 71d3aa7274f3f019938e91aa2a18cd156a343454487dd2cfe5f7da78a97f243f 33708 python3-geneimpacts_0.3.7-4_all.deb Files: 1a2f75dd27c589f2be118a15f1f12388 5679 science optional python-geneimpacts_0.3.7-4_i386.buildinfo 94df51af8650eefdc93a3902101e89d3 33708 python optional python3-geneimpacts_0.3.7-4_all.deb Fri Apr 28 08:57:39 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.b3C3w62M/python-geneimpacts_0.3.7-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.b3C3w62M/python-geneimpacts_0.3.7-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.b3C3w62M/python-geneimpacts_0.3.7-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.b3C3w62M/b1/python-geneimpacts_0.3.7-4_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.b3C3w62M/b2/python-geneimpacts_0.3.7-4_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.409s) 0.409s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Fri Apr 28 08:57:40 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 28 08:57:40 UTC 2023 I: python-geneimpacts from bookworm built successfully and reproducibly on i386. Fri Apr 28 08:57:41 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Apr 28 08:57:41 UTC 2023 I: Submitting 8.0K b1/python-geneimpacts_0.3.7-4_i386.buildinfo.asc Fri Apr 28 08:57:42 UTC 2023 I: Submitting 8.0K b2/python-geneimpacts_0.3.7-4_i386.buildinfo.asc Fri Apr 28 08:57:43 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 28 08:57:43 UTC 2023 I: Done submitting .buildinfo files. Fri Apr 28 08:57:43 UTC 2023 I: Removing signed python-geneimpacts_0.3.7-4_i386.buildinfo.asc files: removed './b1/python-geneimpacts_0.3.7-4_i386.buildinfo.asc' removed './b2/python-geneimpacts_0.3.7-4_i386.buildinfo.asc'