Sun May 7 01:06:11 UTC 2023 I: starting to build pyensembl/bookworm/i386 on jenkins on '2023-05-07 01:06' Sun May 7 01:06:11 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/2269/console.log Sun May 7 01:06:11 UTC 2023 I: Downloading source for bookworm/pyensembl=2.2.4+ds-1 --2023-05-07 01:06:11-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pyensembl/pyensembl_2.2.4%2bds-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2206 (2.2K) [text/prs.lines.tag] Saving to: ‘pyensembl_2.2.4+ds-1.dsc’ 0K .. 100% 103M=0s 2023-05-07 01:06:11 (103 MB/s) - ‘pyensembl_2.2.4+ds-1.dsc’ saved [2206/2206] Sun May 7 01:06:11 UTC 2023 I: pyensembl_2.2.4+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pyensembl Binary: pyensembl Architecture: all Version: 2.2.4+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Étienne Mollier Homepage: https://github.com/openvax/pyensembl Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pyensembl Vcs-Git: https://salsa.debian.org/med-team/pyensembl.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-pandas, python3-numpy, python3-datacache, python3-serializable, python3-memoized-property, python3-gtfparse Package-List: pyensembl deb science optional arch=all Checksums-Sha1: a1c9e26956a7fdbc8b73c734f570150b6d4df2aa 45760 pyensembl_2.2.4+ds.orig.tar.xz 482b4b96bb85e73ad8f53fd23aa2a3c101e7d45a 3628 pyensembl_2.2.4+ds-1.debian.tar.xz Checksums-Sha256: b9453ca486480c48482483b2889ec9d3e1ea1b3c62fbf044d5ce209338062b0b 45760 pyensembl_2.2.4+ds.orig.tar.xz 87034fc0af7b01e2a81c413d4155c9a0e06f57cf9e3172e2499f64e371930038 3628 pyensembl_2.2.4+ds-1.debian.tar.xz Files: 30545252c31c4350e47236a4b45fa1e1 45760 pyensembl_2.2.4+ds.orig.tar.xz 5f345147fd1dd02ed4662603aad03f89 3628 pyensembl_2.2.4+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOoxmwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEv8Q/8Dh8MtpE6CTgcmYSl4FquVY8cDsnLeLc2 mypPs2xWHmZc8DuipseLc46JYTdN3KfZfENplOcEQywJ8aW+zNWaJt8ndHEFyrgb afHn5/b8cFHrO2e/E0J2bIk1Z1dtPcCJE4KZlD164daQMk7uLtQMbnA89dbCQGDQ m2dhEbJs9gfntXVRVYH9hnWILXzry1CAxNbYqTTEFlX/IZR06YJ8hIh3NTVKwNmp zHrsT9LQzD7xLtokpCn4gL5InAFpJu2/dP43I/ZNyO2O6lYfxths8tIVMMBtwXIo 6m0vdfmOKLY5s15GwCwNWxIRhCCempb6Kzn6m+Tbr/diNFIRsvfnymdaTiboXCD2 J/6Oypzn4HuAptJJBzzKSHNTpLUp+PH9z+23JVO4L+911BpTBV8N5KnLQ5qy/q3V GGkblC47q7dp0xZBWJXn0uM2cffxG+xru3LKRpyq9enX45Z/hwjcYDsAvm+BVlAC lU60UO3RRpNLOKBL5cFkXU9scy8f2BzjM83eNWZZ18UlqIwiGH0ReD0ZjS3//o3f KVUokqx9z/d5JWq0PolI78azkPTJyIW9FYrRYjN4yzxx2pIdvPABSg2B21Bpx8ZF 21lrRlTr22/OfypZhsx1B1EvLhXouy/RokG2hO8PoC6K0JlBFsjxGFDChpI6lD4V HCWjvhvxJDs= =gcGc -----END PGP SIGNATURE----- Sun May 7 01:06:11 UTC 2023 I: Checking whether the package is not for us Sun May 7 01:06:11 UTC 2023 I: Starting 1st build on remote node ionos2-i386.debian.net. Sun May 7 01:06:11 UTC 2023 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Sun May 7 01:09:39 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Sat May 6 13:06:18 -12 2023 I: pbuilder-time-stamp: 1683421578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pyensembl_2.2.4+ds-1.dsc] I: copying [./pyensembl_2.2.4+ds.orig.tar.xz] I: copying [./pyensembl_2.2.4+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 25 09:53:48 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pyensembl_2.2.4+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting pyensembl in pyensembl-2.2.4+ds dpkg-source: info: unpacking pyensembl_2.2.4+ds.orig.tar.xz dpkg-source: info: unpacking pyensembl_2.2.4+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3621/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3621' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9VSKLe7C/pbuilderrc_dzFi --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9VSKLe7C/b1 --logfile b1/build.log pyensembl_2.2.4+ds-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 5.10.0-22-686-pae #1 SMP Debian 5.10.178-3 (2023-04-22) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3621/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-pandas, python3-numpy, python3-datacache, python3-serializable, python3-memoized-property, python3-gtfparse dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-datacache; however: Package python3-datacache is not installed. pbuilder-satisfydepends-dummy depends on python3-serializable; however: Package python3-serializable is not installed. pbuilder-satisfydepends-dummy depends on python3-memoized-property; however: Package python3-memoized-property is not installed. pbuilder-satisfydepends-dummy depends on python3-gtfparse; however: Package python3-gtfparse is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-appdirs{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-datacache{a} python3-dateutil{a} python3-distutils{a} python3-gtfparse{a} python3-idna{a} python3-lib2to3{a} python3-memoized-property{a} python3-minimal{a} python3-mock{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pbr{a} python3-pkg-resources{a} python3-requests{a} python3-serializable{a} python3-setuptools{a} python3-simplejson{a} python3-six{a} python3-typechecks{a} python3-tz{a} python3-urllib3{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-scipy python3-tables wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 43.7 MB of archives. After unpacking 191 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.8-1 [1412 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 34 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-2 [131 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B] Get: 51 http://deb.debian.org/debian bookworm/main i386 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 python3-certifi all 2022.9.24-1 [153 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 python3-six all 1.16.0-4 [17.5 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 python3-pbr all 5.10.0-2 [61.4 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 python3-mock all 4.0.3-4 [64.0 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 python3-tz all 2022.7.1-3 [30.1 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 python3-pandas-lib i386 1.5.3+dfsg-2 [3382 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 python3-idna all 3.3-1 [39.4 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 python3-urllib3 all 1.26.12-1 [117 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 python3-typechecks all 0.1.0+ds-3 [4484 B] Get: 69 http://deb.debian.org/debian bookworm/main i386 python3-datacache all 1.2.1-1 [12.6 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 python3-gtfparse all 1.3.0+ds-1 [10.1 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 python3-memoized-property all 1.0.3-2 [5552 B] Get: 72 http://deb.debian.org/debian bookworm/main i386 python3-simplejson i386 3.18.3-1 [61.0 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 python3-serializable all 0.2.1+ds-2 [8176 B] Fetched 43.7 MB in 1s (32.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19920 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../3-libreadline8_8.2-1.3_i386.deb ... Unpacking libreadline8:i386 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_i386.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20354 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.0.8-1_i386.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../05-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../08-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../11-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../22-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../25-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../27-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../28-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../33-python3-lib2to3_3.11.2-2_all.deb ... Unpacking python3-lib2to3 (3.11.2-2) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../34-python3-distutils_3.11.2-2_all.deb ... Unpacking python3-distutils (3.11.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../35-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../36-libblas3_3.11.0-2_i386.deb ... Unpacking libblas3:i386 (3.11.0-2) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../37-libgfortran5_12.2.0-14_i386.deb ... Unpacking libgfortran5:i386 (12.2.0-14) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../38-liblapack3_3.11.0-2_i386.deb ... Unpacking liblapack3:i386 (3.11.0-2) ... Selecting previously unselected package python3-all. Preparing to unpack .../39-python3-all_3.11.2-1+b1_i386.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../40-python3-appdirs_1.4.4-3_all.deb ... Unpacking python3-appdirs (1.4.4-3) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../41-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../42-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../43-python3-chardet_5.1.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.1.0+dfsg-2) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../44-python3-charset-normalizer_3.0.1-2_all.deb ... Unpacking python3-charset-normalizer (3.0.1-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../45-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../46-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-pbr. Preparing to unpack .../47-python3-pbr_5.10.0-2_all.deb ... Unpacking python3-pbr (5.10.0-2) ... Selecting previously unselected package python3-mock. Preparing to unpack .../48-python3-mock_4.0.3-4_all.deb ... Unpacking python3-mock (4.0.3-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../49-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../50-python3-numpy_1%3a1.24.2-1_i386.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../51-python3-tz_2022.7.1-3_all.deb ... Unpacking python3-tz (2022.7.1-3) ... Selecting previously unselected package python3-pandas-lib:i386. Preparing to unpack .../52-python3-pandas-lib_1.5.3+dfsg-2_i386.deb ... Unpacking python3-pandas-lib:i386 (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../53-python3-pandas_1.5.3+dfsg-2_all.deb ... Unpacking python3-pandas (1.5.3+dfsg-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../54-python3-idna_3.3-1_all.deb ... Unpacking python3-idna (3.3-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../55-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../56-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-typechecks. Preparing to unpack .../57-python3-typechecks_0.1.0+ds-3_all.deb ... Unpacking python3-typechecks (0.1.0+ds-3) ... Selecting previously unselected package python3-datacache. Preparing to unpack .../58-python3-datacache_1.2.1-1_all.deb ... Unpacking python3-datacache (1.2.1-1) ... Selecting previously unselected package python3-gtfparse. Preparing to unpack .../59-python3-gtfparse_1.3.0+ds-1_all.deb ... Unpacking python3-gtfparse (1.3.0+ds-1) ... Selecting previously unselected package python3-memoized-property. Preparing to unpack .../60-python3-memoized-property_1.0.3-2_all.deb ... Unpacking python3-memoized-property (1.0.3-2) ... Selecting previously unselected package python3-simplejson. Preparing to unpack .../61-python3-simplejson_3.18.3-1_i386.deb ... Unpacking python3-simplejson (3.18.3-1) ... Selecting previously unselected package python3-serializable. Preparing to unpack .../62-python3-serializable_0.2.1+ds-2_all.deb ... Unpacking python3-serializable (0.2.1+ds-2) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libicu72:i386 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up autopoint (0.21-12) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up openssl (3.0.8-1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.18.3-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-idna (3.3-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-typechecks (0.1.0+ds-3) ... Setting up python3-memoized-property (1.0.3-2) ... Setting up python3-pbr (5.10.0-2) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-serializable (0.2.1+ds-2) ... Setting up python3-mock (4.0.3-4) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-pandas-lib:i386 (1.5.3+dfsg-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-datacache (1.2.1-1) ... Setting up python3-gtfparse (1.3.0+ds-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pyensembl-2.2.4+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pyensembl_2.2.4+ds-1_source.changes dpkg-buildpackage: info: source package pyensembl dpkg-buildpackage: info: source version 2.2.4+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from pyensembl-2.2.4+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pyensembl-2.2.4+ds' dh_auto_clean pybuild --clean -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -f pyensembl.egg-info/SOURCES.txt pyensembl.egg-info/requires.txt make[1]: Leaving directory '/build/pyensembl-2.2.4+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pyensembl.substvars debian/files rm -fr -- debian/pyensembl/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.11 I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/reference_name.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/sequence_data.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/common.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/genome.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/database.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/fasta.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/search.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/ensembl_release_versions.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/normalization.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/locus_with_genome.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/ensembl_release.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/version.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/gene.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/ensembl_url_templates.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/shell.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/locus.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/species.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/transcript.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/__init__.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/exon.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/download_cache.py -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/logging.conf -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl copying pyensembl/../requirements.txt -> /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/.. dh_auto_test -O--buildsystem=pybuild pybuild --test -i python{version} -p 3.11 I: pybuild base:240: cd /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK rm -fr -- /tmp/dh-xdg-rundir-bTmeGQUt create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/pyensembl.substvars rm -fr -- debian/.debhelper/generated/pyensembl/ debian/pyensembl/ debian/tmp/ dh_auto_install --destdir=debian/pyensembl/ -O--buildsystem=pybuild install -m0755 -d /build/pyensembl-2.2.4\+ds/debian/pyensembl pybuild --install -i python{version} -p 3.11 --dest-dir /build/pyensembl-2.2.4\+ds/debian/pyensembl I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/pyensembl-2.2.4+ds/debian/pyensembl running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /build/pyensembl-2.2.4+ds/debian/pyensembl/usr creating /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib creating /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11 creating /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/requirements.txt -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages creating /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/reference_name.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/sequence_data.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/common.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/genome.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/database.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/fasta.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/search.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl creating /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/common.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/ensembl_release.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/version.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/gene.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/ensembl_url_templates.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/database.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/normalization.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/reference_name.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/exon.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/fasta.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/download_cache.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/locus_with_genome.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/locus.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/__init__.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/ensembl_release_versions.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/transcript.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/sequence_data.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/search.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/species.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__pycache__/genome.cpython-311.pyc -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__pycache__ copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/ensembl_release_versions.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/normalization.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/locus_with_genome.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/ensembl_release.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/version.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/gene.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/ensembl_url_templates.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/shell.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/locus.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/species.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/transcript.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/__init__.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/logging.conf -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/exon.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl copying /build/pyensembl-2.2.4+ds/.pybuild/cpython3_3.11_pyensembl/build/pyensembl/download_cache.py -> /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/reference_name.py to reference_name.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/sequence_data.py to sequence_data.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/common.py to common.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/genome.py to genome.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/database.py to database.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/fasta.py to fasta.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/search.py to search.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/ensembl_release_versions.py to ensembl_release_versions.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/normalization.py to normalization.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/locus_with_genome.py to locus_with_genome.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/ensembl_release.py to ensembl_release.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/version.py to version.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/gene.py to gene.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/ensembl_url_templates.py to ensembl_url_templates.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/shell.py to shell.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/locus.py to locus.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/species.py to species.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/transcript.py to transcript.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/__init__.py to __init__.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/exon.py to exon.cpython-311.pyc byte-compiling /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl/download_cache.py to download_cache.cpython-311.pyc running install_egg_info running egg_info writing pyensembl.egg-info/PKG-INFO writing dependency_links to pyensembl.egg-info/dependency_links.txt writing entry points to pyensembl.egg-info/entry_points.txt writing requirements to pyensembl.egg-info/requires.txt writing top-level names to pyensembl.egg-info/top_level.txt writing manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyensembl.egg-info/SOURCES.txt' Copying pyensembl.egg-info to /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/lib/python3.11/dist-packages/pyensembl-2.2.4.egg-info Skipping SOURCES.txt running install_scripts Installing pyensembl script to /build/pyensembl-2.2.4+ds/debian/pyensembl/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/pyensembl-2.2.4+ds' dh_install find debian -name requirements.txt -delete make[1]: Leaving directory '/build/pyensembl-2.2.4+ds' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/usr/share/doc/pyensembl install -p -m0644 debian/copyright debian/pyensembl/usr/share/doc/pyensembl/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/usr/share/doc/pyensembl install -p -m0644 debian/.debhelper/generated/pyensembl/dh_installchangelogs.dch.trimmed debian/pyensembl/usr/share/doc/pyensembl/changelog.Debian dh_installman -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/usr/share/man/man1/ install -p -m0644 ./debian/pyensembl.1 debian/pyensembl/usr/share/man/man1/pyensembl.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pyensembl/usr/share/man/man1/pyensembl.1 mv debian/pyensembl/usr/share/man/man1/pyensembl.1.dh-new debian/pyensembl/usr/share/man/man1/pyensembl.1 chmod 0644 -- debian/pyensembl/usr/share/man/man1/pyensembl.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 5.20230130 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11) D: dh_python3 debhelper:183: source=pyensembl, binary packages=['pyensembl'] D: dh_python3 dh_python3:204: processing package pyensembl... D: dh_python3 fs:52: moving files from debian/pyensembl/usr/lib/python3.11/dist-packages to debian/pyensembl/usr/lib/python3/dist-packages/ D: dh_python3 fs:400: package pyensembl details = {'requires.txt': {'debian/pyensembl/usr/lib/python3/dist-packages/pyensembl-2.2.4.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package pyensembl D: dh_python3 pydist:173: trying to find dependency for datacache>=1.1.4 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for gtfparse<2.0.0,>=1.3.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for memoized-property>=1.0.2 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for nose>=1.3.3 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pylint>=1.4.4 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for serializable (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for tinytimer (python=None) D: dh_python3 pydist:277: invoking dpkg -S *python3/*/[Tt][Ii][Nn][Yy][Tt][Ii][Mm][Ee][Rr]-?*.*-info D: dh_python3 pydist:299: dpkg -S did not find package for tinytimer: b'dpkg-query: no path found matching pattern *python3/*/[Tt][Ii][Nn][Yy][Tt][Ii][Mm][Ee][Rr]-?*.*-info\n' I: dh_python3 pydist:302: Cannot find package that provides tinytimer. Please add package that provides it to Build-Depends or add "tinytimer python3-tinytimer" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. D: dh_python3 pydist:173: trying to find dependency for typechecks>=0.0.2 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:281: D={'pylint', 'python3-gtfparse', 'python3-typechecks', 'python3:any', 'python3-serializable', 'python3-datacache', 'python3-memoized-property', 'python3-nose'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/pyensembl chmod a-x usr/share/doc/pyensembl/changelog.Debian usr/share/man/man1/pyensembl.1 gzip -9nf usr/share/doc/pyensembl/changelog.Debian usr/share/man/man1/pyensembl.1 cd '/build/pyensembl-2.2.4+ds' dh_fixperms -O--buildsystem=pybuild find debian/pyensembl ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pyensembl/usr/share/doc -type f -a -true -a ! -regex 'debian/pyensembl/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pyensembl/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/pyensembl/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/pyensembl/DEBIAN/postinst cat debian/pyensembl.postinst.debhelper >> debian/pyensembl/DEBIAN/postinst chmod 0755 -- debian/pyensembl/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/pyensembl/DEBIAN/prerm cat debian/pyensembl.prerm.debhelper >> debian/pyensembl/DEBIAN/prerm chmod 0755 -- debian/pyensembl/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/DEBIAN echo misc:Depends= >> debian/pyensembl.substvars echo misc:Pre-Depends= >> debian/pyensembl.substvars dpkg-gencontrol -ppyensembl -ldebian/changelog -Tdebian/pyensembl.substvars -Pdebian/pyensembl chmod 0644 -- debian/pyensembl/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/DEBIAN cd debian/pyensembl >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pyensembl/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/pyensembl .. dpkg-deb: building package 'pyensembl' in '../pyensembl_2.2.4+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../pyensembl_2.2.4+ds-1_i386.buildinfo dpkg-genchanges --build=binary -O../pyensembl_2.2.4+ds-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pyensembl-2.2.4+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3621 and its subdirectories I: Current time: Sat May 6 13:09:38 -12 2023 I: pbuilder-time-stamp: 1683421778 Sun May 7 01:09:39 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Sun May 7 01:09:39 UTC 2023 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Sun May 7 01:10:18 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. Sun May 7 01:10:18 UTC 2023 I: pyensembl_2.2.4+ds-1_i386.changes: Format: 1.8 Date: Sun, 25 Dec 2022 22:51:39 +0100 Source: pyensembl Binary: pyensembl Architecture: all Version: 2.2.4+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pyensembl - installs data from the Ensembl genome database Changes: pyensembl (2.2.4+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * Do not install requirements.txt Checksums-Sha1: 00b568c7d43361f98c72bdf0ca06d3492d882c07 34996 pyensembl_2.2.4+ds-1_all.deb db9ae81925c3831aa8c4d9357055d49c24a30d26 6260 pyensembl_2.2.4+ds-1_i386.buildinfo Checksums-Sha256: 3a0859b867a8311760cb4d6bb0e1f6450cdbda3a9896a2b3e20b183cb6424286 34996 pyensembl_2.2.4+ds-1_all.deb 80fe4549eda04e32469e441f04b8bb50df53bc7fae6261620b0eb7e1f626a474 6260 pyensembl_2.2.4+ds-1_i386.buildinfo Files: 3050ef621a2444044d2149b85c86d50c 34996 science optional pyensembl_2.2.4+ds-1_all.deb d128f07b28727e9fee3c20542f855897 6260 science optional pyensembl_2.2.4+ds-1_i386.buildinfo Sun May 7 01:10:19 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.9VSKLe7C/pyensembl_2.2.4+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.9VSKLe7C/pyensembl_2.2.4+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.9VSKLe7C/pyensembl_2.2.4+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.9VSKLe7C/b1/pyensembl_2.2.4+ds-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.9VSKLe7C/b2/pyensembl_2.2.4+ds-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.318s) 0.318s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.015s) 0.015s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun May 7 01:10:21 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Sun May 7 01:10:21 UTC 2023 I: pyensembl from bookworm built successfully and reproducibly on i386. Sun May 7 01:10:22 UTC 2023 I: Submitting .buildinfo files to external archives: Sun May 7 01:10:22 UTC 2023 I: Submitting 8.0K b1/pyensembl_2.2.4+ds-1_i386.buildinfo.asc Sun May 7 01:10:23 UTC 2023 I: Submitting 8.0K b2/pyensembl_2.2.4+ds-1_i386.buildinfo.asc Sun May 7 01:10:23 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 7 01:10:23 UTC 2023 I: Done submitting .buildinfo files. Sun May 7 01:10:23 UTC 2023 I: Removing signed pyensembl_2.2.4+ds-1_i386.buildinfo.asc files: removed './b1/pyensembl_2.2.4+ds-1_i386.buildinfo.asc' removed './b2/pyensembl_2.2.4+ds-1_i386.buildinfo.asc'