Mon May 15 16:23:13 UTC 2023 I: starting to build plink1.9/bookworm/i386 on jenkins on '2023-05-15 16:23' Mon May 15 16:23:13 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_9/13496/console.log Mon May 15 16:23:13 UTC 2023 I: Downloading source for bookworm/plink1.9=1.90~b6.26-220402-1 --2023-05-15 16:23:13-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/plink1.9/plink1.9_1.90%7eb6.26-220402-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2140 (2.1K) [text/prs.lines.tag] Saving to: ‘plink1.9_1.90~b6.26-220402-1.dsc’ 0K .. 100% 12.8M=0s 2023-05-15 16:23:14 (12.8 MB/s) - ‘plink1.9_1.90~b6.26-220402-1.dsc’ saved [2140/2140] Mon May 15 16:23:14 UTC 2023 I: plink1.9_1.90~b6.26-220402-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plink1.9 Binary: plink1.9 Architecture: any-amd64 any-i386 armel armhf mipsel Version: 1.90~b6.26-220402-1 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://www.cog-genomics.org/plink/1.9/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/plink1-9 Vcs-Git: https://salsa.debian.org/med-team/plink1-9.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libatlas-base-dev, liblapack-dev, zlib1g-dev Package-List: plink1.9 deb science optional arch=any-amd64,any-i386,armel,armhf,mipsel Checksums-Sha1: a8e93f6f0dafe302d3f7ac2fa4d0b28d55d076b3 737168 plink1.9_1.90~b6.26-220402.orig.tar.xz 4c805bf0d18f762cfb60639e29386882aa4b493b 46924 plink1.9_1.90~b6.26-220402-1.debian.tar.xz Checksums-Sha256: 21d0f56134965f6904336ddf8d61dc27b834dab97a064d8bee2b909185993e59 737168 plink1.9_1.90~b6.26-220402.orig.tar.xz c838ca150d1a9fcd25af1d0b9713cf6ce9d5b757662d888680c76b3e9eec7add 46924 plink1.9_1.90~b6.26-220402-1.debian.tar.xz Files: 71f4bc3c02e94ad443b22f81c69f95d4 737168 plink1.9_1.90~b6.26-220402.orig.tar.xz fb9615dfc6877fa1a1da2e2004a5078d 46924 plink1.9_1.90~b6.26-220402-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEmjwHvQbeL0FugTpdYS7xYT4FD1QFAmLj7v8ACgkQYS7xYT4F D1SCvhAAopvFfz/sQUFjdYn/trxBUYheKycQqB0BcwMSqKeIdeapHpVQX+pCaZqh rcSrsDjh3lzxOvxT1YoX9bau6SnEE+D4Y47xr7FkMhMgGw1yihPQKOlbJ0zMrjrs 5ajbgEM1zwQJjklaNAvNwZwbJCxv6VqvkTKboPb4F6pVQZa/5fmCR1opuNBvcd2Y EF8OTgkqreaNmemg2ySIKSCsdfkluINYJuR/ez2dq4snedA2CzIpwJSLM0E4vDtU 5tXEsPxqEagh3IipyWBGCTMStfK7uAPE7Gk1L42eH9/yczOKFC0GJN5uhkdTSqkF +Jkc3tFlyOan9ByqDPa266ZNeBZxMSXvVKFlUKHdnUSTw/FVGIRNFxnpMtklp1RO UwXx+vbwHL9aYRHu7WtfFWTU5HbSZ6qgri1PaQ+z7nTjd8s84RnY/yf5I4Z9AefV CeE1e+aO0z11afQnbL667t4gVcVsMqEfI0pF553Sf8bKc/Jwd7Mz4sPZCHtwLNXN qzYbspwDCeIYYP6yPwBodpuORJ8nPLtrP3BjW00vyOo4OxEhmUU+3CvQT8h1FZiL CquZ/S3vLFQpuq3chPulBRVplOMPImSwGoEb9V0HnHnCzCROKBdos1abFqKmamGB N5kaKX9i7QIUyZXfyJ1ZhJtaMH9bCHdfY9fwE41QAVnD2oXr5fE= =666R -----END PGP SIGNATURE----- Mon May 15 16:23:14 UTC 2023 I: Checking whether the package is not for us Mon May 15 16:23:14 UTC 2023 I: Starting 1st build on remote node ionos2-i386.debian.net. Mon May 15 16:23:14 UTC 2023 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Mon May 15 16:26:24 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 15 04:23:20 -12 2023 I: pbuilder-time-stamp: 1684167800 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [plink1.9_1.90~b6.26-220402-1.dsc] I: copying [./plink1.9_1.90~b6.26-220402.orig.tar.xz] I: copying [./plink1.9_1.90~b6.26-220402-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jul 29 02:30:23 2022 -12 gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plink1.9_1.90~b6.26-220402-1.dsc: no acceptable signature found dpkg-source: info: extracting plink1.9 in plink1.9-1.90~b6.26-220402 dpkg-source: info: unpacking plink1.9_1.90~b6.26-220402.orig.tar.xz dpkg-source: info: unpacking plink1.9_1.90~b6.26-220402-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_makefile.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5798/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='90cceddf9a5d42c8914b77107cc592af' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5798' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.45x5A5JZ/pbuilderrc_QpkZ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.45x5A5JZ/b1 --logfile b1/build.log plink1.9_1.90~b6.26-220402-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 5.10.0-23-686-pae #1 SMP Debian 5.10.179-1 (2023-05-12) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/5798/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libatlas-base-dev, liblapack-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libatlas-base-dev; however: Package libatlas-base-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libatlas-base-dev{a} libatlas3-base{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 33.1 MB of archives. After unpacking 140 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libatlas3-base i386 3.10.3-13 [2992 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libatlas-base-dev i386 3.10.3-13 [3174 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 liblapack-dev i386 3.11.0-2 [4187 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Fetched 33.1 MB in 1s (41.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. 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Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/plink1.9-1.90~b6.26-220402/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plink1.9_1.90~b6.26-220402-1_source.changes dpkg-buildpackage: info: source package plink1.9 dpkg-buildpackage: info: source version 1.90~b6.26-220402-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/plink1.9-1.90~b6.26-220402' dh_auto_clean make -j8 clean make[2]: Entering directory '/build/plink1.9-1.90~b6.26-220402' rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw make[2]: Leaving directory '/build/plink1.9-1.90~b6.26-220402' rm -f plink1.9 rm -f plink1.9.1 make[1]: Leaving directory '/build/plink1.9-1.90~b6.26-220402' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/plink1.9-1.90~b6.26-220402' dh_auto_build make -j8 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/plink1.9-1.90~b6.26-220402' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink.c -o plink.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_assoc.c -o plink_assoc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_calc.c -o plink_calc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_cluster.c -o plink_cluster.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_cnv.c -o plink_cnv.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_common.c -o plink_common.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_data.c -o plink_data.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_dosage.c -o plink_dosage.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_family.c -o plink_family.o In file included from plink.c:20: plink.c: In function 'int32_t plink(char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, Two_col_params*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, int32_t, double, double, double, double, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, char*, uint32_t, uint32_t, Chrom_info*, Oblig_missing_info*, Family_info*, double, double, uint32_t, uint32_t, double, double, double, double, double, double, double, double, uint64_t, uint64_t, uint64_t, uint32_t, uintptr_t, uint32_t, uintptr_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, double, double, Homozyg_info*, Cluster_info*, uint32_t, uint32_t, Set_info*, Ld_info*, Epi_info*, Clump_info*, Rel_info*, Score_info*, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, int32_t, int32_t, char*, char*, char*, Range_list*, uint32_t, uint32_t, Range_list*, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, double, uint32_t, uint32_t, Range_list*, Range_list*, double, double, double, uint32_t, double, uint32_t, Aperm_info*, uint32_t, uintptr_t, uint32_t, double, uint32_t, double, Range_list*, uint32_t, uint32_t, uint32_t, int32_t, Ll_str**)': plink.c:475:24: warning: '%s' directive writing between 9 and 2147483645 bytes into a region of size 2147483625 [-Wformat-overflow=] 475 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", bedname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW' 998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink.c:475:47: note: format string is defined here 475 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", bedname); | ^~ In file included from /usr/include/stdio.h:906, from plink_common.h:25: In function 'int sprintf(char*, const char*, ...)', inlined from 'int32_t plink(char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, Two_col_params*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, int32_t, double, double, double, double, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, char*, uint32_t, uint32_t, Chrom_info*, Oblig_missing_info*, Family_info*, double, double, uint32_t, uint32_t, double, double, double, double, double, double, double, double, uint64_t, uint64_t, uint64_t, uint32_t, uintptr_t, uint32_t, uintptr_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, double, double, Homozyg_info*, Cluster_info*, uint32_t, uint32_t, Set_info*, Ld_info*, Epi_info*, Clump_info*, Rel_info*, Score_info*, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, int32_t, int32_t, char*, char*, char*, Range_list*, uint32_t, uint32_t, Range_list*, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, double, uint32_t, uint32_t, Range_list*, Range_list*, double, double, double, uint32_t, double, uint32_t, Aperm_info*, uint32_t, uintptr_t, uint32_t, double, uint32_t, double, Range_list*, uint32_t, uint32_t, uint32_t, int32_t, Ll_str**)' at plink.c:475:2: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 128 and 2147483764 bytes into a destination of size 2147483647 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ plink.c: In function 'int32_t plink(char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, Two_col_params*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, int32_t, double, double, double, double, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, char*, uint32_t, uint32_t, Chrom_info*, Oblig_missing_info*, Family_info*, double, double, uint32_t, uint32_t, double, double, double, double, double, double, double, double, uint64_t, uint64_t, uint64_t, uint32_t, uintptr_t, uint32_t, uintptr_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, double, double, Homozyg_info*, Cluster_info*, uint32_t, uint32_t, Set_info*, Ld_info*, Epi_info*, Clump_info*, Rel_info*, Score_info*, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, int32_t, int32_t, char*, char*, char*, Range_list*, uint32_t, uint32_t, Range_list*, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, double, uint32_t, uint32_t, Range_list*, Range_list*, double, double, double, uint32_t, double, uint32_t, Aperm_info*, uint32_t, uintptr_t, uint32_t, double, uint32_t, double, Range_list*, uint32_t, uint32_t, uint32_t, int32_t, Ll_str**)': plink.c:546:24: warning: '%s' directive writing between 9 and 2147483645 bytes into a region of size 2147483625 [-Wformat-overflow=] 546 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", bedname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW' 998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink.c:546:47: note: format string is defined here 546 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", bedname); | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'int32_t plink(char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, Two_col_params*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, int32_t, double, double, double, double, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, char*, uint32_t, uint32_t, Chrom_info*, Oblig_missing_info*, Family_info*, double, double, uint32_t, uint32_t, double, double, double, double, double, double, double, double, uint64_t, uint64_t, uint64_t, uint32_t, uintptr_t, uint32_t, uintptr_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, double, double, Homozyg_info*, Cluster_info*, uint32_t, uint32_t, Set_info*, Ld_info*, Epi_info*, Clump_info*, Rel_info*, Score_info*, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, int32_t, int32_t, char*, char*, char*, Range_list*, uint32_t, uint32_t, Range_list*, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, double, uint32_t, uint32_t, Range_list*, Range_list*, double, double, double, uint32_t, double, uint32_t, Aperm_info*, uint32_t, uintptr_t, uint32_t, double, uint32_t, double, Range_list*, uint32_t, uint32_t, uint32_t, int32_t, Ll_str**)' at plink.c:546:2: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 128 and 2147483764 bytes into a destination of size 2147483647 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_filter.c -o plink_filter.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_glm.c -o plink_glm.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_help.c -o plink_help.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_homozyg.c -o plink_homozyg.o In file included from plink_data.c:18: plink_data.c: In function 'int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)': plink_data.c:5824:24: warning: '%s' directive writing between 9 and 2147483645 bytes into a region of size 2147483625 [-Wformat-overflow=] 5824 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW' 998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:5824:47: note: format string is defined here 5824 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname); | ^~ In file included from /usr/include/stdio.h:906, from plink_common.h:25: In function 'int sprintf(char*, const char*, ...)', inlined from 'int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)' at plink_data.c:5824:2: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 118 and 2147483754 bytes into a destination of size 2147483647 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_lasso.c -o plink_lasso.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_ld.c -o plink_ld.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_matrix.c -o plink_matrix.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_misc.c -o plink_misc.o plink_data.c: In function 'int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)': plink_data.c:8032:24: warning: '%s' directive writing between 5 and 2147483645 bytes into a region of size 2147483625 [-Wformat-overflow=] 8032 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW' 998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:8032:47: note: format string is defined here 8032 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname); | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)' at plink_data.c:8032:2: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 30 and 2147483670 bytes into a destination of size 2147483647 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_perm.c -o plink_perm.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_rserve.c -o plink_rserve.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_set.c -o plink_set.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security plink_stats.c -o plink_stats.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security SFMT.c -o SFMT.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security dcdflib.c -o dcdflib.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security pigz.c -o pigz.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security yarn.c -o yarn.o g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security Rconnection.cc -o Rconnection.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security hfile.c -o hfile.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/plink1.9-1.90~b6.26-220402=. -fstack-protector-strong -Wformat -Werror=format-security bgzf.c -o bgzf.o plink_data.c: In function 'int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)': plink_data.c:14576:22: warning: '%s' directive writing between 9 and 2147483645 bytes into a region of size 2147483625 [-Wformat-overflow=] 14576 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW' 998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:14576:45: note: format string is defined here 14576 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname); | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)' at plink_data.c:14576:7: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 128 and 2147483764 bytes into a destination of size 2147483647 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -L/usr/lib64/atlas -llapack -lblas -lcblas -latlas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -lz -o plink make[2]: Leaving directory '/build/plink1.9-1.90~b6.26-220402' mv plink plink1.9 make[1]: Leaving directory '/build/plink1.9-1.90~b6.26-220402' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/plink1.9-1.90~b6.26-220402' dh_installchangelogs debian/upstream.docs/upstream.changelog make[1]: Leaving directory '/build/plink1.9-1.90~b6.26-220402' dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/plink1.9-1.90~b6.26-220402' dh_installman debian/plink1.9.1 make[1]: Leaving directory '/build/plink1.9-1.90~b6.26-220402' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b6.26-220402-1_i386.deb'. dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b6.26-220402-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../plink1.9_1.90~b6.26-220402-1_i386.buildinfo dpkg-genchanges --build=binary -O../plink1.9_1.90~b6.26-220402-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5798 and its subdirectories I: Current time: Mon May 15 04:26:23 -12 2023 I: pbuilder-time-stamp: 1684167983 Mon May 15 16:26:25 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Mon May 15 16:26:25 UTC 2023 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Mon May 15 16:27:11 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. Mon May 15 16:27:12 UTC 2023 I: plink1.9_1.90~b6.26-220402-1_i386.changes: Format: 1.8 Date: Fri, 29 Jul 2022 16:23:52 +0200 Source: plink1.9 Binary: plink1.9 plink1.9-dbgsym Architecture: i386 Version: 1.90~b6.26-220402-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Dylan Aïssi Description: plink1.9 - whole-genome association analysis toolset Changes: plink1.9 (1.90~b6.26-220402-1) unstable; urgency=medium . * New upstream release. * Standards-Version: 4.6.1 (no changes needed) Checksums-Sha1: 0f176366211fcfabac90925df244586895414cb7 2607008 plink1.9-dbgsym_1.90~b6.26-220402-1_i386.deb 08dceae9671a1fb0430996a6edc2be5004face91 5359 plink1.9_1.90~b6.26-220402-1_i386.buildinfo 20c91cf8e4afc3ad4710a4e7eaf37e1e8017d518 895748 plink1.9_1.90~b6.26-220402-1_i386.deb Checksums-Sha256: b1020deb2be404fd8ee60d1ebc5c63180baf7b19f2eeab378b5fe81131a46bda 2607008 plink1.9-dbgsym_1.90~b6.26-220402-1_i386.deb 73ff5159efbe935cf11ee072be4b9d1e01158b043ce17a23318f51572ef8d49b 5359 plink1.9_1.90~b6.26-220402-1_i386.buildinfo 815911c0a2273e26cde3230a245085335b9f4de36777c7011e4cd1bf509c76d3 895748 plink1.9_1.90~b6.26-220402-1_i386.deb Files: 795190368603b213af707a0aa3a3858b 2607008 debug optional plink1.9-dbgsym_1.90~b6.26-220402-1_i386.deb 49880939c1fbc2c2b300b79b2d3c5af0 5359 science optional plink1.9_1.90~b6.26-220402-1_i386.buildinfo 01ef98ee46ba8a01a10f88cb41ee2d6c 895748 science optional plink1.9_1.90~b6.26-220402-1_i386.deb Mon May 15 16:27:13 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.45x5A5JZ/plink1.9_1.90~b6.26-220402-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.45x5A5JZ/plink1.9_1.90~b6.26-220402-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.45x5A5JZ/plink1.9_1.90~b6.26-220402-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.45x5A5JZ/b1/plink1.9_1.90~b6.26-220402-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.45x5A5JZ/b2/plink1.9_1.90~b6.26-220402-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.351s) 0.351s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.051s) 0.051s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon May 15 16:27:19 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Mon May 15 16:27:19 UTC 2023 I: plink1.9 from bookworm built successfully and reproducibly on i386. Mon May 15 16:27:21 UTC 2023 I: Submitting .buildinfo files to external archives: Mon May 15 16:27:21 UTC 2023 I: Submitting 8.0K b1/plink1.9_1.90~b6.26-220402-1_i386.buildinfo.asc Mon May 15 16:27:23 UTC 2023 I: Submitting 8.0K b2/plink1.9_1.90~b6.26-220402-1_i386.buildinfo.asc Mon May 15 16:27:23 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 15 16:27:23 UTC 2023 I: Done submitting .buildinfo files. Mon May 15 16:27:23 UTC 2023 I: Removing signed plink1.9_1.90~b6.26-220402-1_i386.buildinfo.asc files: removed './b1/plink1.9_1.90~b6.26-220402-1_i386.buildinfo.asc' removed './b2/plink1.9_1.90~b6.26-220402-1_i386.buildinfo.asc'