Sun Apr 16 12:13:53 UTC 2023 I: starting to build lucy/bookworm/i386 on jenkins on '2023-04-16 12:13' Sun Apr 16 12:13:53 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/6841/console.log Sun Apr 16 12:13:53 UTC 2023 I: Downloading source for bookworm/lucy=1.20-3 --2023-04-16 12:13:53-- http://cdn-fastly.deb.debian.org/debian/pool/main/l/lucy/lucy_1.20-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1945 (1.9K) [text/prs.lines.tag] Saving to: ‘lucy_1.20-3.dsc’ 0K . 100% 123M=0s 2023-04-16 12:13:53 (123 MB/s) - ‘lucy_1.20-3.dsc’ saved [1945/1945] Sun Apr 16 12:13:54 UTC 2023 I: lucy_1.20-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lucy Binary: lucy Architecture: any Version: 1.20-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra Homepage: https://lucy.sourceforge.net Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/lucy Vcs-Git: https://salsa.debian.org/med-team/lucy.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12) Package-List: lucy deb science optional arch=any Checksums-Sha1: 890006f550efd06745e7156359ee8b519d3b5f62 1457619 lucy_1.20.orig.tar.gz 7787b31b5e6c7c3c6fedd30f002d5d87bf4148f9 3860 lucy_1.20-3.debian.tar.xz Checksums-Sha256: e06313f6d60b1b1429aad6c86c02df22edc6337613fafa5db0a09a09c7a35af3 1457619 lucy_1.20.orig.tar.gz 2319deb95edf60caa6d27b306ff8fe5f883c20cfc348620f077cb30fe6a2de86 3860 lucy_1.20-3.debian.tar.xz Files: 8f9e2d1541793015f35d3b72302e348b 1457619 lucy_1.20.orig.tar.gz 58386f3567ef9b936eb9e2b0e042fba1 3860 lucy_1.20-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6cgxwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEotA//aGsE9erN6T8q+JIXOm2fLcqE8mpRq58R KhlrtoB+9paJiw/tkk0TKSycTob6KScVrrw8wU5Z8rm1kGPoDnFgaPfzDjvcqEgD lBrYYszAMV3/+hRtgxN6zaJebCS4OUO6+AH4iYd/xgOgIk2TM+P0MExqjtgdw5MQ 3DOUcDyYqb40g9/u5KXJMmzfoJEiMFdTBGxaZPTMCUWRtXYND8vdSc2haulh914H bj/Yy7RgghMUjDt8AGpS9TiEkK3fCEAeqLOO7e9Z45DB65uEcJGahRE/DfFoOvVW URfZw48cM5N8P7GZ0eJcg8An69Qm9JaLBXwTl4ySF+SNZaFT+E0siYARM1BUIm0/ wB5MVQoQIOGuiVJcjLhhwtQ7X13slApT535kpqh2OVvpEOFwyDGPA/3blUZQrHbs 8s3pDTHwMA1BIYj4jmetQhI9QrVgMbfdxvqe5Y/wORWXDQVbBb61yliuG/iGilAs NmwA9c/6ZohHw0SL13g7OnguZGFf+lqQKErWGw7rlLrkeTocA/kG16WhCASF3SFC L9jftg/994WKdVw+IaZvZHrpgL76/APL1lJYJBZ+YAkvgmeaBJXMFJfhPcRWPaTa lCkic4hkExE/+R1jwT46zGQxl3VUKvndSC2qQEM0dPLIvO+kpUg+wr0vL2JYOiAe lDzQ4vPvHsw= =/EQp -----END PGP SIGNATURE----- Sun Apr 16 12:13:54 UTC 2023 I: Checking whether the package is not for us Sun Apr 16 12:13:54 UTC 2023 I: Starting 1st build on remote node ionos16-i386.debian.net. Sun Apr 16 12:13:54 UTC 2023 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Sun Apr 16 12:14:17 UTC 2023 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 18 06:36:54 -12 2024 I: pbuilder-time-stamp: 1716057414 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [lucy_1.20-3.dsc] I: copying [./lucy_1.20.orig.tar.gz] I: copying [./lucy_1.20-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Apr 19 04:58:04 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./lucy_1.20-3.dsc: no acceptable signature found dpkg-source: info: extracting lucy in lucy-1.20 dpkg-source: info: unpacking lucy_1.20.orig.tar.gz dpkg-source: info: unpacking lucy_1.20-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying helpingMakefile.patch dpkg-source: info: applying spellings.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/26139/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='eb307e5bccf24c45b4acd774e8d1e343' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='26139' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2X2cBvsT/pbuilderrc_pxie --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2X2cBvsT/b1 --logfile b1/build.log lucy_1.20-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/26139/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 72.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Fetched 19.0 MB in 0s (56.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lucy_1.20-3_source.changes dpkg-buildpackage: info: source package lucy dpkg-buildpackage: info: source version 1.20-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/lucy-1.20' rm -f lucy.o qual_trim.o abi.o vector.o splice.o poly.o lucy make[1]: Leaving directory '/build/lucy-1.20' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/lucy.substvars debian/files rm -fr -- debian/lucy/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lucy-1.20' cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lucy.o lucy.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qual_trim.o qual_trim.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abi.o abi.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o splice.o splice.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c done! qual_trim.c:10:1: warning: "/*" within comment [-Wcomment] 10 | /* qual_trim.c - Quality trimming algorithm which determines a "clean" | qual_trim.c:11:1: warning: "/*" within comment [-Wcomment] 11 | /* range for a sequence based on its phred quality values. | qual_trim.c:12:1: warning: "/*" within comment [-Wcomment] 12 | /* | qual_trim.c:13:1: warning: "/*" within comment [-Wcomment] 13 | /* Written by Michael Holmes, 4/13/99. | qual_trim.c:14:1: warning: "/*" within comment [-Wcomment] 14 | /* | qual_trim.c:15:1: warning: "/*" within comment [-Wcomment] 15 | /* 1/31/2000, Michael Holmes -- Added default_windows(). | qual_trim.c:16:1: warning: "/*" within comment [-Wcomment] 16 | /* 2/15/2000, Michael Holmes -- Added bracket_clean_range() and | qual_trim.c:17:1: warning: "/*" within comment [-Wcomment] 17 | /* set_bracket(). | qual_trim.c:18:1: warning: "/*" within comment [-Wcomment] 18 | /* 2/18/2000, Michael Holmes -- Minor change to test-mode output only. | abi.c:24:8: warning: type defaults to 'int' in declaration of 'condition' [-Wimplicit-int] 24 | static condition[]={ | ^~~~~~~~~ qual_trim.c:19:1: warning: "/*" within comment [-Wcomment] 19 | /* | qual_trim.c:20:1: warning: "/*" within comment [-Wcomment] 20 | /* Copyright (C) 1999, 2000, The Institute for Genomic Research. All rights | qual_trim.c:21:1: warning: "/*" within comment [-Wcomment] 21 | /* reserved. | qual_trim.c:22:1: warning: "/*" within comment [-Wcomment] 22 | /* | qual_trim.c:23:1: warning: "/*" within comment [-Wcomment] 23 | /* Note: phred quality values are based on the log (base 10) of the | qual_trim.c:24:1: warning: "/*" within comment [-Wcomment] 24 | /* probability that the corresponding base call is in error: | qual_trim.c:25:1: warning: "/*" within comment [-Wcomment] 25 | /* | qual_trim.c:26:1: warning: "/*" within comment [-Wcomment] 26 | /* Q = -10 log(P_error) | qual_trim.c:27:1: warning: "/*" within comment [-Wcomment] 27 | /* | qual_trim.c:28:1: warning: "/*" within comment [-Wcomment] 28 | /* Thanks to Granger Sutton for valuable suggestions. | qual_trim.c:29:1: warning: "/*" within comment [-Wcomment] 29 | /* | qual_trim.c:30:1: warning: "/*" within comment [-Wcomment] 30 | /* The main functions of interest to external code (such as lucy) are | qual_trim.c:31:1: warning: "/*" within comment [-Wcomment] 31 | /* default_windows() and quality_trim(). The grim() function emulates the | qual_trim.c:32:1: warning: "/*" within comment [-Wcomment] 32 | /* interface that was used by the old quality trimmimg algorithm (grim), | qual_trim.c:33:1: warning: "/*" within comment [-Wcomment] 33 | /* but it is not called by lucy. The main() function is compiled only if | qual_trim.c:34:1: warning: "/*" within comment [-Wcomment] 34 | /* TEST_THIS_CODE is #defined. | qual_trim.c:35:1: warning: "/*" within comment [-Wcomment] 35 | /* | qual_trim.c:36:1: warning: "/*" within comment [-Wcomment] 36 | /* The calling hierarchy is: | qual_trim.c:37:1: warning: "/*" within comment [-Wcomment] 37 | /* | qual_trim.c:38:1: warning: "/*" within comment [-Wcomment] 38 | /* main() | qual_trim.c:39:1: warning: "/*" within comment [-Wcomment] 39 | /* grim() | qual_trim.c:40:1: warning: "/*" within comment [-Wcomment] 40 | /* default_windows() | qual_trim.c:41:1: warning: "/*" within comment [-Wcomment] 41 | /* quality_trim() | qual_trim.c:42:1: warning: "/*" within comment [-Wcomment] 42 | /* bracket_clean_range() | qual_trim.c:43:1: warning: "/*" within comment [-Wcomment] 43 | /* multi_window_trim() | qual_trim.c:44:1: warning: "/*" within comment [-Wcomment] 44 | /* window_trim() | qual_trim.c:45:1: warning: "/*" within comment [-Wcomment] 45 | /* multi_window_trim() [recursive call] | qual_trim.c:46:1: warning: "/*" within comment [-Wcomment] 46 | /* average_error_trim() | qual_trim.c:47:1: warning: "/*" within comment [-Wcomment] 47 | /* | qual_trim.c:48:1: warning: "/*" within comment [-Wcomment] 48 | /**************************************************************************/ | abi.c: In function 'abi_code': abi.c:70:15: warning: implicit declaration of function 'random' [-Wimplicit-function-declaration] 70 | case 5: tmp=random()%2 ? 2 : 0; break; | ^~~~~~ abi.c:82:5: warning: implicit declaration of function 'giveup' [-Wimplicit-function-declaration] 82 | giveup("how can other cases happen in tag_code?"); | ^~~~~~ poly.c: In function 'poly_at_left': splice.c: In function 'splice_align_left': poly.c:22:9: warning: implicit declaration of function 'abi_code' [-Wimplicit-function-declaration] 22 | if (abi_code(*seq)==T) { | ^~~~~~~~ splice.c:53:12: warning: type defaults to 'int' in declaration of 'left' [-Wimplicit-int] 53 | register left, top, direc, score, i, j; | ^~~~ splice.c:53:18: warning: type defaults to 'int' in declaration of 'top' [-Wimplicit-int] 53 | register left, top, direc, score, i, j; | ^~~ splice.c:53:23: warning: type defaults to 'int' in declaration of 'direc' [-Wimplicit-int] 53 | register left, top, direc, score, i, j; | ^~~~~ splice.c:53:30: warning: type defaults to 'int' in declaration of 'score' [-Wimplicit-int] 53 | register left, top, direc, score, i, j; | ^~~~~ splice.c:53:37: warning: type defaults to 'int' in declaration of 'i' [-Wimplicit-int] 53 | register left, top, direc, score, i, j; | ^ splice.c:53:40: warning: type defaults to 'int' in declaration of 'j' [-Wimplicit-int] 53 | register left, top, direc, score, i, j; | ^ splice.c:68:32: warning: array subscript has type 'char' [-Wchar-subscripts] 68 | Score(0,0)=max_score=match[*a][*b]; | ^~ splice.c:68:36: warning: array subscript has type 'char' [-Wchar-subscripts] 68 | Score(0,0)=max_score=match[*a][*b]; | ^~ splice.c:75:20: warning: array subscript has type 'char' [-Wchar-subscripts] 75 | score=match[a[i]][*b]; | ~^~~ splice.c:75:25: warning: array subscript has type 'char' [-Wchar-subscripts] 75 | score=match[a[i]][*b]; | ^~ splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ splice.c:76:38: note: in expansion of macro 'Direc' 76 | left=Score(i-1,0)+left_penalty[Direc(i-1,0)]; | ^~~~~ splice.c:90:19: warning: array subscript has type 'char' [-Wchar-subscripts] 90 | score=match[*a][b[j]]; | ^~ splice.c:90:24: warning: array subscript has type 'char' [-Wchar-subscripts] 90 | score=match[*a][b[j]]; | ~^~~ abi.c: In function 'abi_align': abi.c:195:18: warning: array subscript has type 'char' [-Wchar-subscripts] 195 | if (badness[a[i]][b[j]]) { | ~^~~ abi.c:195:24: warning: array subscript has type 'char' [-Wchar-subscripts] 195 | if (badness[a[i]][b[j]]) { | ~^~~ splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ splice.c:91:36: note: in expansion of macro 'Direc' 91 | top=Score(0,j-1)+top_penalty[Direc(0,j-1)]; | ^~~~~ abi.c:221:18: warning: array subscript has type 'char' [-Wchar-subscripts] 221 | if (badness[a[i]][b[j]]) { | ~^~~ abi.c:221:24: warning: array subscript has type 'char' [-Wchar-subscripts] 221 | if (badness[a[i]][b[j]]) { | ~^~~ splice.c:107:25: warning: array subscript has type 'char' [-Wchar-subscripts] 107 | score+=match[a[i]][b[j]]; | ~^~~ splice.c:107:31: warning: array subscript has type 'char' [-Wchar-subscripts] 107 | score+=match[a[i]][b[j]]; | ~^~~ splice.c:110:24: warning: array subscript has type 'char' [-Wchar-subscripts] 110 | score=match[a[i]][b[j]]; | ~^~~ splice.c:110:30: warning: array subscript has type 'char' [-Wchar-subscripts] 110 | score=match[a[i]][b[j]]; | ~^~~ splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ splice.c:113:38: note: in expansion of macro 'Direc' 113 | top=Score(i,j-1)+top_penalty[Direc(i,j-1)]; | ^~~~~ abi.c:226:46: warning: array subscript has type 'char' [-Wchar-subscripts] 226 | l=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ abi.c:294:45: warning: array subscript has type 'char' [-Wchar-subscripts] 294 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ abi.c:301:30: warning: array subscript has type 'char' [-Wchar-subscripts] 301 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ abi.c:313:45: warning: array subscript has type 'char' [-Wchar-subscripts] 313 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ splice.c:260:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 260 | while (direc=Direc(i,j)) | ^~~~~ splice.c:276:15: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 276 | if (j>=span && j>=width-max_i || j>height/2) | ~~~~~~~~^~~~~~~~~~~~~~~~~ abi.c:320:30: warning: array subscript has type 'char' [-Wchar-subscripts] 320 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ abi.c:334:45: warning: array subscript has type 'char' [-Wchar-subscripts] 334 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ abi.c:341:30: warning: array subscript has type 'char' [-Wchar-subscripts] 341 | if ((count+=badness[a[l]][b[r]])left), &(ptr->right)); | ^~~~~~~~~~~~ qual_trim.c:689:1: warning: "/*" within comment [-Wcomment] 689 | /* int bracket_window, (size of terminal window) | qual_trim.c:690:1: warning: "/*" within comment [-Wcomment] 690 | /* double bracket_error (allowable average prob. error in window) | qual_trim.c:691:1: warning: "/*" within comment [-Wcomment] 691 | /* | qual_trim.c: In function 'quality_trim': qual_trim.c:705:21: warning: unused variable 'sum' [-Wunused-variable] 705 | double err, sum; | ^~~ qual_trim.c:705:16: warning: unused variable 'err' [-Wunused-variable] 705 | double err, sum; | ^~~ qual_trim.c: At top level: qual_trim.c:792:1: warning: "/*" within comment [-Wcomment] 792 | /* Sets up 3 windows for quality trimming, with the average error allowed | qual_trim.c:793:1: warning: "/*" within comment [-Wcomment] 793 | /* in each window calculated from max_avg_error. | qual_trim.c:794:1: warning: "/*" within comment [-Wcomment] 794 | /* | qual_trim.c:795:1: warning: "/*" within comment [-Wcomment] 795 | /* Globals used: | qual_trim.c:796:1: warning: "/*" within comment [-Wcomment] 796 | /* int num_windows, (number of windows) | lucy.c:669:5: warning: implicit declaration of function 'prepare_abi_mask' [-Wimplicit-function-declaration] 669 | prepare_abi_mask(); | ^~~~~~~~~~~~~~~~ qual_trim.c:797:1: warning: "/*" within comment [-Wcomment] 797 | /* int *windows, (array of window sizes (largest to smallest)) | qual_trim.c:798:1: warning: "/*" within comment [-Wcomment] 798 | /* double *err_limits, (array of maximum allowed average probability) | qual_trim.c:799:1: warning: "/*" within comment [-Wcomment] 799 | /* (for each window size) | qual_trim.c:800:1: warning: "/*" within comment [-Wcomment] 800 | /* double max_avg_error, (maximum allowed average probability of error) | qual_trim.c:801:1: warning: "/*" within comment [-Wcomment] 801 | /* | qual_trim.c:826:1: warning: "/*" within comment [-Wcomment] 826 | /* Simulates the functionality of the old grim() function, by calling | qual_trim.c:827:1: warning: "/*" within comment [-Wcomment] 827 | /* quality_trim(). | qual_trim.c:828:1: warning: "/*" within comment [-Wcomment] 828 | /* | qual_trim.c:829:1: warning: "/*" within comment [-Wcomment] 829 | /* Globals used: | qual_trim.c:830:1: warning: "/*" within comment [-Wcomment] 830 | /* int num_windows, (number of windows) | qual_trim.c:831:1: warning: "/*" within comment [-Wcomment] 831 | /* int *windows, (array of window sizes (largest to smallest)) | qual_trim.c:832:1: warning: "/*" within comment [-Wcomment] 832 | /* double *err_limits, (array of maximum allowed average probability) | qual_trim.c:833:1: warning: "/*" within comment [-Wcomment] 833 | /* (for each window size) | qual_trim.c:834:1: warning: "/*" within comment [-Wcomment] 834 | /* double max_avg_error, (maximum allowed average probability of error) | qual_trim.c:835:1: warning: "/*" within comment [-Wcomment] 835 | /* double end_limit, (maximum allowed probability of error for bases) | qual_trim.c:836:1: warning: "/*" within comment [-Wcomment] 836 | /* ( at each end of clean range) | lucy.c:713:9: warning: implicit declaration of function 'abi_align' [-Wimplicit-function-declaration] 713 | abi_align(phred_seq, ptr->len, abi_seq, bases, &left, &right); | ^~~~~~~~~ qual_trim.c:837:1: warning: "/*" within comment [-Wcomment] 837 | /* | lucy.c:891:14: warning: implicit declaration of function 'poly_at_left' [-Wimplicit-function-declaration] 891 | left=poly_at_left(&phred_seq[seqs[i].left], | ^~~~~~~~~~~~ lucy.c:894:15: warning: implicit declaration of function 'poly_at_right' [-Wimplicit-function-declaration] 894 | right=poly_at_right(&phred_seq[seqs[i].right], | ^~~~~~~~~~~~~ abi.c: In function 'abi_code': abi.c:84:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] 84 | return tmp; | ^~~ abi.c:62:16: note: 'tmp' was declared here 62 | register int tmp; | ^~~ lucy.c:934:5: warning: implicit declaration of function 'construct_vector_tags' [-Wimplicit-function-declaration] 934 | construct_vector_tags(vec_seq, bases); | ^~~~~~~~~~~~~~~~~~~~~ lucy.c:947:11: warning: implicit declaration of function 'match_vector_tags' [-Wimplicit-function-declaration] 947 | j=match_vector_tags(phred_seq+seqs[i].left, bases); | ^~~~~~~~~~~~~~~~~ lucy.c:959:5: warning: implicit declaration of function 'destroy_vector_tags' [-Wimplicit-function-declaration] 959 | destroy_vector_tags(); | ^~~~~~~~~~~~~~~~~~~ lucy.c:631:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 631 | fgets(buf, BUFFER_LENGTH, qul_file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f lucy cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -o lucy lucy.o qual_trim.o abi.o vector.o splice.o poly.o -lpthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[1]: Leaving directory '/build/lucy-1.20' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/lucy.substvars rm -fr -- debian/.debhelper/generated/lucy/ debian/lucy/ debian/tmp/ dh_auto_install --destdir=debian/lucy/ install -m0755 -d /build/lucy-1.20/debian/lucy dh_install install -m0755 -d debian/lucy/usr/bin cp --reflink=auto -a ./lucy debian/lucy/usr/bin/ dh_installdocs install -m0755 -d debian/lucy/usr/share/doc/lucy install -m0755 -d debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./debian/README.Debian debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./debian/README.source debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./README.FIRST debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./HISTORY debian/lucy/usr/share/doc/lucy chmod -R u\+rw,go=rX debian/lucy/usr/share/doc install -p -m0644 debian/README.Debian debian/lucy/usr/share/doc/lucy/README.Debian install -p -m0644 debian/copyright debian/lucy/usr/share/doc/lucy/copyright dh_installchangelogs install -m0755 -d debian/lucy/usr/share/doc/lucy install -p -m0644 debian/.debhelper/generated/lucy/dh_installchangelogs.dch.trimmed debian/lucy/usr/share/doc/lucy/changelog.Debian mv debian/lucy/usr/share/doc/lucy/HISTORY debian/lucy/usr/share/doc/lucy/changelog chmod 0644 -- debian/lucy/usr/share/doc/lucy/changelog dh_installexamples install -m0755 -d debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./ARMTM40TR.qul debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./ARMTM40TR.seq debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./PUC19 debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./PUC19splice debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./PUC19splice.for debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./PUC19splice.rev debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./atie.2nd debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./atie.qul debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./atie.seq debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./pSPORT1splice debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./pSPORT1vector debian/lucy/usr/share/doc/lucy/examples debian/rules override_dh_installman make[1]: Entering directory '/build/lucy-1.20' sed 1d -i lucy.1 dh_installman install -m0755 -d debian/lucy/usr/share/man/man1/ install -p -m0644 ./lucy.1 debian/lucy/usr/share/man/man1/lucy.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lucy/usr/share/man/man1/lucy.1 mv debian/lucy/usr/share/man/man1/lucy.1.dh-new debian/lucy/usr/share/man/man1/lucy.1 chmod 0644 -- debian/lucy/usr/share/man/man1/lucy.1 make[1]: Leaving directory '/build/lucy-1.20' dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/lucy chmod a-x usr/share/doc/lucy/README.FIRST usr/share/doc/lucy/changelog usr/share/doc/lucy/changelog.Debian usr/share/man/man1/lucy.1 gzip -9nf usr/share/doc/lucy/README.FIRST usr/share/doc/lucy/changelog usr/share/doc/lucy/changelog.Debian usr/share/man/man1/lucy.1 cd '/build/lucy-1.20' dh_fixperms find debian/lucy ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/lucy/usr/share/doc -type f -a -true -a ! -regex 'debian/lucy/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/lucy/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz dwz -- debian/lucy/usr/bin/lucy dh_strip install -m0755 -d debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/lucy/usr/bin/lucy debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/f4/ddc1245bbadbe15b4d92e45ed9d40606068336.debug chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/f4/ddc1245bbadbe15b4d92e45ed9d40606068336.debug strip --remove-section=.comment --remove-section=.note debian/lucy/usr/bin/lucy objcopy --add-gnu-debuglink debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/f4/ddc1245bbadbe15b4d92e45ed9d40606068336.debug debian/lucy/usr/bin/lucy install -m0755 -d debian/.debhelper/lucy/dbgsym-root/usr/share/doc ln -s lucy debian/.debhelper/lucy/dbgsym-root/usr/share/doc/lucy-dbgsym install -m0755 -d debian/.debhelper/lucy dh_makeshlibs rm -f debian/lucy/DEBIAN/shlibs dh_shlibdeps install -m0755 -d debian/lucy/DEBIAN dpkg-shlibdeps -Tdebian/lucy.substvars debian/lucy/usr/bin/lucy dh_installdeb install -m0755 -d debian/lucy/DEBIAN dh_gencontrol install -m0755 -d debian/lucy/DEBIAN echo misc:Depends= >> debian/lucy.substvars echo misc:Pre-Depends= >> debian/lucy.substvars install -m0755 -d debian/.debhelper/lucy/dbgsym-root/DEBIAN dpkg-gencontrol -plucy -ldebian/changelog -Tdebian/lucy.substvars -Pdebian/.debhelper/lucy/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=lucy-dbgsym "-DDepends=lucy (= \${binary:Version})" "-DDescription=debug symbols for lucy" -DBuild-Ids=f4ddc1245bbadbe15b4d92e45ed9d40606068336 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/control dpkg-gencontrol -plucy -ldebian/changelog -Tdebian/lucy.substvars -Pdebian/lucy chmod 0644 -- debian/lucy/DEBIAN/control dh_md5sums install -m0755 -d debian/lucy/DEBIAN cd debian/lucy >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/lucy/DEBIAN/md5sums install -m0755 -d debian/.debhelper/lucy/dbgsym-root/DEBIAN cd debian/.debhelper/lucy/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/lucy .. dpkg-deb --root-owner-group --build debian/.debhelper/lucy/dbgsym-root .. dpkg-deb: building package 'lucy' in '../lucy_1.20-3_i386.deb'. dpkg-deb: building package 'lucy-dbgsym' in '../lucy-dbgsym_1.20-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../lucy_1.20-3_i386.buildinfo dpkg-genchanges --build=binary -O../lucy_1.20-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/26139 and its subdirectories I: Current time: Sat May 18 06:37:16 -12 2024 I: pbuilder-time-stamp: 1716057436 Sun Apr 16 12:14:17 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Sun Apr 16 12:14:17 UTC 2023 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Sun Apr 16 12:14:53 UTC 2023 I: Deleting $TMPDIR on ionos12-i386.debian.net. Sun Apr 16 12:14:54 UTC 2023 I: lucy_1.20-3_i386.changes: Format: 1.8 Date: Sun, 19 Apr 2020 21:43:05 +0530 Source: lucy Binary: lucy lucy-dbgsym Architecture: i386 Version: 1.20-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: lucy - DNA sequence quality and vector trimming tool Changes: lucy (1.20-3) unstable; urgency=medium . * Remove redundant files * Add patch to fix spelling mistakes Checksums-Sha1: 8290b4571834190884b3579f6bd7e04d6b6a2f3b 41020 lucy-dbgsym_1.20-3_i386.deb 2e951622bfeb6e426059f6af37797aa6e67d9470 5029 lucy_1.20-3_i386.buildinfo 3e53fa13e9dff3ac28741e6d76e7afd3fe9ee73c 913060 lucy_1.20-3_i386.deb Checksums-Sha256: 0c8bb96fcd7a4eb75260bb794437fd9e3cdc7c5b1b693837bd80a9b188293b85 41020 lucy-dbgsym_1.20-3_i386.deb 3ea3d89352028473d20280b12e3e67d879546ba5d57f2b2d3b33635ddec166eb 5029 lucy_1.20-3_i386.buildinfo f998a69a83ca1e8939160480a497720d42ad9e304afe135544d8b36e9d6692d7 913060 lucy_1.20-3_i386.deb Files: 205a4da87e80cbfd0c01784bbfabc235 41020 debug optional lucy-dbgsym_1.20-3_i386.deb 890ba593cff0e8282447a57123a8fea9 5029 science optional lucy_1.20-3_i386.buildinfo 208e2b67e75f5804ced4e5bdb53fdb46 913060 science optional lucy_1.20-3_i386.deb Sun Apr 16 12:14:55 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2X2cBvsT/lucy_1.20-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2X2cBvsT/lucy_1.20-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2X2cBvsT/lucy_1.20-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2X2cBvsT/b1/lucy_1.20-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.2X2cBvsT/b2/lucy_1.20-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.322s) 0.322s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun Apr 16 12:14:56 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 16 12:14:56 UTC 2023 I: lucy from bookworm built successfully and reproducibly on i386. Sun Apr 16 12:14:57 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Apr 16 12:14:57 UTC 2023 I: Submitting 8.0K b1/lucy_1.20-3_i386.buildinfo.asc Sun Apr 16 12:14:58 UTC 2023 I: Submitting 8.0K b2/lucy_1.20-3_i386.buildinfo.asc Sun Apr 16 12:14:59 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 16 12:14:59 UTC 2023 I: Done submitting .buildinfo files. Sun Apr 16 12:14:59 UTC 2023 I: Removing signed lucy_1.20-3_i386.buildinfo.asc files: removed './b1/lucy_1.20-3_i386.buildinfo.asc' removed './b2/lucy_1.20-3_i386.buildinfo.asc'