Sun Apr 23 14:11:06 UTC 2023 I: starting to build libbpp-popgen/bookworm/i386 on jenkins on '2023-04-23 14:10' Sun Apr 23 14:11:06 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/919/console.log Sun Apr 23 14:11:06 UTC 2023 I: Downloading source for bookworm/libbpp-popgen=2.4.1-8 --2023-04-23 14:11:06-- http://cdn-fastly.deb.debian.org/debian/pool/main/libb/libbpp-popgen/libbpp-popgen_2.4.1-8.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2178 (2.1K) [text/prs.lines.tag] Saving to: ‘libbpp-popgen_2.4.1-8.dsc’ 0K .. 100% 138M=0s 2023-04-23 14:11:06 (138 MB/s) - ‘libbpp-popgen_2.4.1-8.dsc’ saved [2178/2178] Sun Apr 23 14:11:06 UTC 2023 I: libbpp-popgen_2.4.1-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbpp-popgen Binary: libbpp-popgen-dev, libbpp-popgen8 Architecture: any Version: 2.4.1-8 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-popgen Vcs-Git: https://salsa.debian.org/med-team/libbpp-popgen.git Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev, libbpp-seq-dev Package-List: libbpp-popgen-dev deb libdevel optional arch=any libbpp-popgen8 deb libs optional arch=any Checksums-Sha1: 87cd4dfa9e51b37af0bfde87b4762464a4cc49ae 116874 libbpp-popgen_2.4.1.orig.tar.gz 93b588d9b166ee2f8edd8947f3f700ed15cf0433 19432 libbpp-popgen_2.4.1-8.debian.tar.xz Checksums-Sha256: 03b57d71a63c8fa7f11c085e531d0d691fc1d40d4ea541070dabde0ab3baf413 116874 libbpp-popgen_2.4.1.orig.tar.gz 9cc66cad56f44ce51eacd2cc4781c8bf49fea6ed3e87444262bf991ce1f88064 19432 libbpp-popgen_2.4.1-8.debian.tar.xz Files: cdc84495e251b6ff4260385adecbea28 116874 libbpp-popgen_2.4.1.orig.tar.gz 4ecab551d7d4e59586f0908da742bc34 19432 libbpp-popgen_2.4.1-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOCgkcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFTcg/+P0B8EVlocrpBdzFddRiwfy/O7sgbq5Cx CWeDsQwP5Xs5mkPjVHb9BqKCSTvU62SiKtrP0w5olYgvEQHsLg/07K3LSirttRot 279BUgMfOm6Qy+VeAryGaSd4y51D//2icN4YbK15JWfo0LCu20Np4dblVU9loNHW EUmGDsQA1pV8z1zhCdPP2oggK+jCzKNYRuqs5F8nUz0xZU5X6NR3vdDJMnvmC6Gv SK2phB4rx7/GEIWvuGvhXTF2QTSzRkoMd31G9yzebli8tnAm4klx7SWzSyxYzFt7 OspuIBsis6H4ULx0fPh2bZOyhLpA+g31PrueFKLOA1XZpCPbIH9yyjNzy0qFMUwU t+D21WwoS1/iyuSaCrAxrVQtHqLV0XIwTpjEtIMeLScaW0TixzFqBEab6lTIvQZf IfvzX+Y/vJ5b5WmgKtknA0uOrbY/BNjl1ovo7CeBRBWj99TmDK1GwTR5O/Irbarx pR97bDK+6d9QGYaL5NNakLThE6Rxty2PJUbK8cblQu9ZSU5aBB6yFzCdqriFqUSa L5aRf+Fih+a2z7og0Q49QGnnYJa7WhRXkEXfhYvB9+YVq5ex6QQqmgyBOwK982Lm +CQB+yD5T5qTnDePoppxCRsiTYJ1zJJGKUPD9LPAG/OKyKdKZzEpuFopRhOF0L+K dCvM20/vmL4= =XLTX -----END PGP SIGNATURE----- Sun Apr 23 14:11:06 UTC 2023 I: Checking whether the package is not for us Sun Apr 23 14:11:06 UTC 2023 I: Starting 1st build on remote node ionos2-i386.debian.net. Sun Apr 23 14:11:06 UTC 2023 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Sun Apr 23 14:13:16 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 23 02:11:08 -12 2023 I: pbuilder-time-stamp: 1682259068 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libbpp-popgen_2.4.1-8.dsc] I: copying [./libbpp-popgen_2.4.1.orig.tar.gz] I: copying [./libbpp-popgen_2.4.1-8.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 26 09:16:55 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbpp-popgen_2.4.1-8.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-popgen in libbpp-popgen-2.4.1 dpkg-source: info: unpacking libbpp-popgen_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-popgen_2.4.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8462/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='94de74487d694be6b6221f44ff3af8ab' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8462' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BRI1Bvsv/pbuilderrc_bU17 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BRI1Bvsv/b1 --logfile b1/build.log libbpp-popgen_2.4.1-8.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Feb 12 08:21 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 08:21 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/8462/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev, libbpp-seq-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbpp-core-dev; however: Package libbpp-core-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev; however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbpp-core-dev{a} libbpp-core4{a} libbpp-seq-dev{a} libbpp-seq12{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 53 newly installed, 0 to remove and 0 not upgraded. Need to get 36.7 MB of archives. After unpacking 141 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libarchive13 i386 3.6.2-1 [385 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-8 [419 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libjsoncpp25 i386 1.9.5-4 [86.2 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 librhash0 i386 1.4.3-3 [149 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libuv1 i386 1.44.2-1 [147 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 cmake i386 3.25.1-1 [9767 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 d-shlibs all 0.104 [18.6 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 42 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 44 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libbpp-core4 i386 2.4.1-9 [626 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libbpp-core-dev i386 2.4.1-9 [985 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libbpp-seq12 i386 2.4.1-9 [509 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libbpp-seq-dev i386 2.4.1-9 [771 kB] Fetched 36.7 MB in 1s (36.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_i386.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libbpp-popgen-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-popgen_2.4.1-8_source.changes dpkg-buildpackage: info: source package libbpp-popgen dpkg-buildpackage: info: source version 2.4.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/i386-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/i386-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu dh_auto_build cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/libbpp-popgen-2.4.1 -B/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/CMakeFiles /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/depend make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-popgen-2.4.1 /build/libbpp-popgen-2.4.1/src /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src/CMakeFiles/bpp-popgen-static.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-popgen-2.4.1 /build/libbpp-popgen-2.4.1/src /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src/CMakeFiles/bpp-popgen-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/build make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/build [ 1%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o [ 3%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/BasicAlleleInfo.cpp cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o [ 8%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o [ 9%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o.d -o 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src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c 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CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 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-I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -MF 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src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o.d -o 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src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp [ 45%] 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src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 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/build/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 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CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && 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CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp [ 66%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. 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CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd 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src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c 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-ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 85%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp [ 93%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp [ 95%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp [ 98%] Linking CXX static library libbpp-popgen.a cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/cmake -P 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"CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/bin/ranlib libbpp-popgen.a make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' [ 98%] Built target bpp-popgen-static [100%] Linking CXX shared library libbpp-popgen.so cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-popgen.so.8 -o libbpp-popgen.so.8.0.0 "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 cd /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-popgen.so.8.0.0 libbpp-popgen.so.8 libbpp-popgen.so make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' [100%] Built target bpp-popgen-shared make[2]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/libbpp-popgen-2.4.1/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-i686-linux-gnu && make -j8 install DESTDIR=/build/libbpp-popgen-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/libbpp-popgen-2.4.1 -B/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/bpp-popgen/bpp-popgen-config.cmake -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/bpp-popgen/bpp-popgen-config-version.cmake -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/libbpp-popgen.a -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/libbpp-popgen.so.8 -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/libbpp-popgen.so -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BasicAlleleInfo.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonoAlleleMonolocusGenotype.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/GeneralExceptions.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotype.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/SequenceStatistics.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Individual.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IODataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IDataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Date.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Group.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Locality.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSetTools.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotypeTools.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/AlleleInfo.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/LocusInfo.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotype.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets.cmake -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets-none.cmake make[1]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/libbpp-popgen-2.4.1' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/i386-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-popgen-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libbpp-popgen8/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libbpp-popgen.a debian/libbpp-popgen-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libbpp-popgen.so debian/libbpp-popgen-dev/usr/lib/i386-linux-gnu mv /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/libbpp-popgen.so.8 debian/libbpp-popgen8/usr/lib/i386-linux-gnu mv /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 debian/libbpp-popgen8/usr/lib/i386-linux-gnu PKGDEV=libbpp-popgen-dev PKGSHL=libbpp-popgen8 install -d -m 755 debian/libbpp-popgen-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-popgen-dev/usr/include install -d -m 755 debian/libbpp-popgen-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/cmake debian/libbpp-popgen-dev/usr/lib/i386-linux-gnu make[1]: Leaving directory '/build/libbpp-popgen-2.4.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some libraries disappeared in the symbols file: libbpp-popgen.so.8 dpkg-gensymbols: warning: the generated symbols file is empty --- debian/symbols (libbpp-popgen-dev_2.4.1-8_i386) +++ dpkg-gensymbolsW6zf_G 2023-04-23 02:12:47.103531602 -1200 @@ -1,1361 +0,0 @@ -libbpp-popgen.so.8 libbpp-popgen8 #MINVER# - _ZN3bpp10Individual11addSequenceEmRKNS_8SequenceE@Base 2.4.1 - _ZN3bpp10Individual11setGenotypeERKNS_18MultilocusGenotypeE@Base 2.4.1 - _ZN3bpp10Individual11setLocalityEPKNS_8LocalityIdEE@Base 2.4.1 - _ZN3bpp10Individual12initGenotypeEm@Base 2.4.1 - _ZN3bpp10Individual12setSequencesERKNS_20MapSequenceContainerE@Base 2.4.1 - _ZN3bpp10Individual14deleteGenotypeEv@Base 2.4.1 - _ZN3bpp10Individual20deleteSequenceByNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZN3bpp10Individual20getMonolocusGenotypeEm@Base 2.4.1 - _ZN3bpp10Individual20setMonolocusGenotypeEmRKNS_17MonolocusGenotypeE@Base 2.4.1 - 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_ZN3bpp7DataSet8addGroupERKNS_5GroupE@Base 2.4.1 - _ZN3bpp7DataSetC1ERKS0_@Base 2.4.1 - _ZN3bpp7DataSetC1Ev@Base 2.4.1 - _ZN3bpp7DataSetC2ERKS0_@Base 2.4.1 - _ZN3bpp7DataSetC2Ev@Base 2.4.1 - _ZN3bpp7DataSetD1Ev@Base 2.4.1 - _ZN3bpp7DataSetD2Ev@Base 2.4.1 - _ZN3bpp7DataSetaSERKS0_@Base 2.4.1 - _ZN3bpp7Genepop4readERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZN3bpp7Genepop4readERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERNS_7DataSetE@Base 2.4.1 - _ZN3bpp7Genepop4readERSi@Base 2.4.1 - _ZN3bpp7Genepop4readERSiRNS_7DataSetE@Base 2.4.1 - _ZN3bpp7GenepopC1Ev@Base 2.4.1 - _ZN3bpp7GenepopC2Ev@Base 2.4.1 - _ZN3bpp7GenepopD0Ev@Base 2.4.1 - _ZN3bpp7GenepopD1Ev@Base 2.4.1 - _ZN3bpp7GenepopD2Ev@Base 2.4.1 - _ZN3bpp7Genetix4readERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZN3bpp7Genetix4readERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERNS_7DataSetE@Base 2.4.1 - _ZN3bpp7Genetix4readERSi@Base 2.4.1 - _ZN3bpp7Genetix4readERSiRNS_7DataSetE@Base 2.4.1 - _ZN3bpp7GenetixC1Ev@Base 2.4.1 - _ZN3bpp7GenetixC2Ev@Base 2.4.1 - _ZN3bpp7GenetixD0Ev@Base 2.4.1 - _ZN3bpp7GenetixD1Ev@Base 2.4.1 - _ZN3bpp7GenetixD2Ev@Base 2.4.1 - _ZN3bpp7Point2DIdED0Ev@Base 2.4.1 - _ZN3bpp7Point2DIdED1Ev@Base 2.4.1 - _ZN3bpp8LocalityIdED0Ev@Base 2.4.1 - _ZN3bpp8LocalityIdED1Ev@Base 2.4.1 - _ZN3bpp9DarwinDonC1Ev@Base 2.4.1 - _ZN3bpp9DarwinDonC2Ev@Base 2.4.1 - _ZN3bpp9DarwinDonD0Ev@Base 2.4.1 - _ZN3bpp9DarwinDonD1Ev@Base 2.4.1 - _ZN3bpp9DarwinDonD2Ev@Base 2.4.1 - _ZN3bpp9ExceptionC1ERKS0_@Base 2.4.1 - _ZN3bpp9ExceptionC2ERKS0_@Base 2.4.1 - _ZN3bpp9ExceptionD0Ev@Base 2.4.1 - _ZN3bpp9ExceptionD1Ev@Base 2.4.1 - _ZN3bpp9ExceptionD2Ev@Base 2.4.1 - _ZN3bpp9LocusInfo12HAPLODIPLOIDE@Base 2.4.1 - _ZN3bpp9LocusInfo13addAlleleInfoERKNS_10AlleleInfoE@Base 2.4.1 - _ZN3bpp9LocusInfo5clearEv@Base 2.4.1 - _ZN3bpp9LocusInfo7DIPLOIDE@Base 2.4.1 - _ZN3bpp9LocusInfo7HAPLOIDE@Base 2.4.1 - _ZN3bpp9LocusInfo7UNKNOWNE@Base 2.4.1 - _ZN3bpp9LocusInfoC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEj@Base 2.4.1 - _ZN3bpp9LocusInfoC1ERKS0_@Base 2.4.1 - _ZN3bpp9LocusInfoC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEj@Base 2.4.1 - _ZN3bpp9LocusInfoC2ERKS0_@Base 2.4.1 - _ZN3bpp9LocusInfoD0Ev@Base 2.4.1 - _ZN3bpp9LocusInfoD1Ev@Base 2.4.1 - _ZN3bpp9LocusInfoD2Ev@Base 2.4.1 - _ZN3bpp9RowMatrixIdE6resizeEmm@Base 2.4.1 - _ZN3bpp9RowMatrixIdED0Ev@Base 2.4.1 - _ZN3bpp9RowMatrixIdED1Ev@Base 2.4.1 - _ZN3bpp9RowMatrixIdED2Ev@Base 2.4.1 - _ZN3bpp9RowMatrixIdEclEmm@Base 2.4.1 - _ZN3bpp9TextTools2toImEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZN3bpp9TextTools8toStringIcEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1 - _ZN3bpp9TextTools8toStringIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1 - _ZN3bpp9TextTools8toStringImEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1 - _ZN3bppdvIdiEESt6vectorIT_SaIS2_EERKS4_RKT0_@Base 2.4.1 - _ZN3bppmiIdiEESt6vectorIT_SaIS2_EERKS4_RKT0_@Base 2.4.1 - _ZN3bppmlIdEESt6vectorIT_SaIS2_EERKS4_S6_@Base 2.4.1 - _ZNK3bpp10Individual11getGenotypeEv@Base 2.4.1 - _ZNK3bpp10Individual11getLocalityEv@Base 2.4.1 - _ZNK3bpp10Individual11hasGenotypeEv@Base 2.4.1 - _ZNK3bpp10Individual11hasLocalityEv@Base 2.4.1 - _ZNK3bpp10Individual12getSequencesEv@Base 2.4.1 - _ZNK3bpp10Individual12hasSequencesEv@Base 2.4.1 - _ZNK3bpp10Individual17getSequenceByNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp10Individual17getSequencesNamesB5cxx11Ev@Base 2.4.1 - _ZNK3bpp10Individual19countHomozygousLociEv@Base 2.4.1 - _ZNK3bpp10Individual19countNonMissingLociEv@Base 2.4.1 - _ZNK3bpp10Individual19getSequenceAlphabetEv@Base 2.4.1 - _ZNK3bpp10Individual19getSequencePositionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp10Individual20getNumberOfSequencesEv@Base 2.4.1 - _ZNK3bpp10Individual21countHeterozygousLociEv@Base 2.4.1 - _ZNK3bpp10Individual21getSequenceAtPositionEm@Base 2.4.1 - _ZNK3bpp10Individual21getSequencesPositionsEv@Base 2.4.1 - _ZNK3bpp10Individual21hasSequenceAtPositionEm@Base 2.4.1 - _ZNK3bpp10Individual4getXEv@Base 2.4.1 - _ZNK3bpp10Individual4getYEv@Base 2.4.1 - _ZNK3bpp10Individual7getDateEv@Base 2.4.1 - _ZNK3bpp10Individual7hasDateEv@Base 2.4.1 - _ZNK3bpp10Individual8getCoordEv@Base 2.4.1 - _ZNK3bpp10Individual8hasCoordEv@Base 2.4.1 - _ZNK3bpp11GeneticCode17getSourceAlphabetEv@Base 2.4.1 - _ZNK3bpp11PopgenlibIO13getFormatNameB5cxx11Ev@Base 2.4.1 - _ZNK3bpp11PopgenlibIO16getDataSeparatorB5cxx11Ev@Base 2.4.1 - _ZNK3bpp11PopgenlibIO18getMissingDataCharEv@Base 2.4.1 - _ZNK3bpp11PopgenlibIO20getDataSeparatorCharEv@Base 2.4.1 - _ZNK3bpp11PopgenlibIO20getFormatDescriptionB5cxx11Ev@Base 2.4.1 - _ZNK3bpp11PopgenlibIO20getMissingDataSymbolB5cxx11Ev@Base 2.4.1 - _ZNK3bpp11PopgenlibIO5writeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_7DataSetEb@Base 2.4.1 - _ZNK3bpp11PopgenlibIO5writeERSoRKNS_7DataSetE@Base 2.4.1 - _ZNK3bpp12AnalyzedLoci18getLocusInfoByNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp12AnalyzedLoci18getNumberOfAllelesEv@Base 2.4.1 - _ZNK3bpp12AnalyzedLoci20getLocusInfoPositionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp12AnalyzedLoci20getPloidyByLocusNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp12AnalyzedLoci22getLocusInfoAtPositionEm@Base 2.4.1 - _ZNK3bpp12AnalyzedLoci24getPloidyByLocusPositionEm@Base 2.4.1 - _ZNK3bpp13CodonAlphabet23getUnknownCharacterCodeEv@Base 2.4.1 - _ZNK3bpp14DistanceMatrix5cloneEv@Base 2.4.1 - _ZNK3bpp14DistanceMatrix8asMatrixEv@Base 2.4.1 - _ZNK3bpp14DistanceMatrixclERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base 2.4.1 - _ZNK3bpp14DistanceMatrixclEmm@Base 2.4.1 - _ZNK3bpp15BasicAlleleInfo5cloneEv@Base 2.4.1 - _ZNK3bpp15BasicAlleleInfo5getIdB5cxx11Ev@Base 2.4.1 - _ZNK3bpp15BasicAlleleInfoeqERKS0_@Base 2.4.1 - _ZNK3bpp15BasicAlleleInfoneERKS0_@Base 2.4.1 - _ZNK3bpp15BasicSymbolList11getAlphabetEv@Base 2.4.1 - _ZNK3bpp15BasicSymbolList4sizeEv@Base 2.4.1 - _ZNK3bpp15BasicSymbolList5cloneEv@Base 2.4.1 - _ZNK3bpp15BasicSymbolListixEm@Base 2.4.1 - _ZNK3bpp15DarwinVarSingle13getFormatNameB5cxx11Ev@Base 2.4.1 - _ZNK3bpp15DarwinVarSingle20getFormatDescriptionB5cxx11Ev@Base 2.4.1 - _ZNK3bpp15DarwinVarSingle5writeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_7DataSetEb@Base 2.4.1 - _ZNK3bpp15DarwinVarSingle5writeERSoRKNS_7DataSetE@Base 2.4.1 - _ZNK3bpp15NucleicAlphabet12isUnresolvedEi@Base 2.4.1 - _ZNK3bpp16AbstractCoreSite11getPositionEv@Base 2.4.1 - _ZNK3bpp16AbstractODataSet5writeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_7DataSetEb@Base 2.4.1 - _ZNK3bpp17AbstractISequence23appendSequencesFromFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERNS_17SequenceContainerE@Base 2.4.1 - _ZNK3bpp17AnalyzedSequences15getAlphabetTypeB5cxx11Ev@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual11getGenotypeEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual11getLocalityEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual11getSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual11getSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEm@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual11hasGenotypeEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual11hasLocalityEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual12hasSequencesEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual16getSequencesKeysB5cxx11Ev@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual20getNumberOfSequencesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual22getNumberOfSequenceSetEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual26getVectorSequenceContainerERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual4getXEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual4getYEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual5getIdB5cxx11Ev@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual6getSexEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual7getDateEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual7hasDateEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual8getCoordEv@Base 2.4.1 - _ZNK3bpp18MultiSeqIndividual8hasCoordEv@Base 2.4.1 - _ZNK3bpp18MultilocusGenotype19countHomozygousLociEv@Base 2.4.1 - _ZNK3bpp18MultilocusGenotype19countNonMissingLociEv@Base 2.4.1 - _ZNK3bpp18MultilocusGenotype20getMonolocusGenotypeEm@Base 2.4.1 - _ZNK3bpp18MultilocusGenotype21countHeterozygousLociEv@Base 2.4.1 - _ZNK3bpp18MultilocusGenotype26isMonolocusGenotypeMissingEm@Base 2.4.1 - _ZNK3bpp18MultilocusGenotype4sizeEv@Base 2.4.1 - _ZNK3bpp19GeneMapperCsvExport13getFormatNameB5cxx11Ev@Base 2.4.1 - _ZNK3bpp19GeneMapperCsvExport20getFormatDescriptionB5cxx11Ev@Base 2.4.1 - _ZNK3bpp19VectorSiteContainer20getNumberOfSequencesEv@Base 2.4.1 - _ZNK3bpp19VectorSiteContainer5cloneEv@Base 2.4.1 - _ZNK3bpp19VectorSiteContainer7valueAtERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEm@Base 2.4.1 - _ZNK3bpp19VectorSiteContainer7valueAtEmm@Base 2.4.1 - _ZNK3bpp19VectorSiteContainerclERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEm@Base 2.4.1 - _ZNK3bpp19VectorSiteContainerclEmm@Base 2.4.1 - _ZNK3bpp20AbstractCoreSequence11getCommentsB5cxx11Ev@Base 2.4.1 - _ZNK3bpp20AbstractCoreSequence7getNameB5cxx11Ev@Base 2.4.1 - _ZNK3bpp20AbstractOutputStream12getPrecisionEv@Base 2.4.1 - _ZNK3bpp20AbstractOutputStream27isScientificNotationEnabledEv@Base 2.4.1 - _ZNK3bpp20MapSequenceContainer20getNumberOfSequencesEv@Base 2.4.1 - _ZNK3bpp22BadIdentifierException13getIdentifierB5cxx11Ev@Base 2.4.1 - _ZNK3bpp22GroupNotFoundException13getIdentifierB5cxx11Ev@Base 2.4.1 - _ZNK3bpp22LocusNotFoundException13getIdentifierB5cxx11Ev@Base 2.4.1 - _ZNK3bpp22StlOutputStreamWrapper5cloneEv@Base 2.4.1 - _ZNK3bpp23AlleleNotFoundException13getIdentifierB5cxx11Ev@Base 2.4.1 - _ZNK3bpp23VectorSequenceContainer20getNumberOfSequencesEv@Base 2.4.1 - _ZNK3bpp25AbstractSequenceContainer11getAlphabetEv@Base 2.4.1 - _ZNK3bpp25AbstractSequenceContainer11getCommentsB5cxx11Em@Base 2.4.1 - _ZNK3bpp25AbstractSequenceContainer11getCommentsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp25AbstractSequenceContainer18getGeneralCommentsB5cxx11Ev@Base 2.4.1 - _ZNK3bpp25AbstractSequenceContainer7getNameB5cxx11Em@Base 2.4.1 - _ZNK3bpp25AbstractSequenceContainer8toStringB5cxx11Em@Base 2.4.1 - _ZNK3bpp25AbstractSequenceContainer8toStringERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp25BiAlleleMonolocusGenotype12isHomozygousEv@Base 2.4.1 - _ZNK3bpp25BiAlleleMonolocusGenotype14getAlleleIndexEv@Base 2.4.1 - _ZNK3bpp25BiAlleleMonolocusGenotype19getFirstAlleleIndexEv@Base 2.4.1 - _ZNK3bpp25BiAlleleMonolocusGenotype20getSecondAlleleIndexEv@Base 2.4.1 - _ZNK3bpp25BiAlleleMonolocusGenotype5cloneEv@Base 2.4.1 - _ZNK3bpp25BiAlleleMonolocusGenotypeeqERKS0_@Base 2.4.1 - _ZNK3bpp25LocalityNotFoundException13getIdentifierB5cxx11Ev@Base 2.4.1 - _ZNK3bpp25SequenceNotFoundException13getSequenceIdB5cxx11Ev@Base 2.4.1 - _ZNK3bpp27IndividualNotFoundException13getIdentifierB5cxx11Ev@Base 2.4.1 - _ZNK3bpp27MonoAlleleMonolocusGenotype14getAlleleIndexEv@Base 2.4.1 - _ZNK3bpp27MonoAlleleMonolocusGenotype5cloneEv@Base 2.4.1 - _ZNK3bpp27MonoAlleleMonolocusGenotypeeqERKS0_@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer10getGroupIdEm@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer11groupExistsEm@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer12getGroupNameB5cxx11Em@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer12getGroupSizeEm@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer15getAllGroupsIdsEv@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer15getNumberOfLociEv@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer17getAllGroupsNamesB5cxx11Ev@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer17getLocusGroupSizeEmm@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer17getNumberOfGroupsEv@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer21getMultilocusGenotypeEm@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer4sizeEv@Base 2.4.1 - _ZNK3bpp27PolymorphismMultiGContainer9isAlignedEv@Base 2.4.1 - _ZNK3bpp28MultiAlleleMonolocusGenotype12isHomozygousEv@Base 2.4.1 - _ZNK3bpp28MultiAlleleMonolocusGenotype14getAlleleIndexEv@Base 2.4.1 - _ZNK3bpp28MultiAlleleMonolocusGenotype5cloneEv@Base 2.4.1 - _ZNK3bpp28MultiAlleleMonolocusGenotypeeqERKS0_@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer10getGroupIdERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer10getGroupIdEm@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer11hasOutgroupEv@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer15getAllGroupsIdsEv@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer15isIngroupMemberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer15isIngroupMemberEm@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer15toSiteContainerEv@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer16getSequenceCountERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer16getSequenceCountEm@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer17getNumberOfGroupsEv@Base 2.4.1 - _ZNK3bpp29PolymorphismSequenceContainer5cloneEv@Base 2.4.1 - _ZNK3bpp4Date10getDateStrB5cxx11Ev@Base 2.4.1 - _ZNK3bpp4Date5cloneEv@Base 2.4.1 - _ZNK3bpp4DateeqERKS0_@Base 2.4.1 - _ZNK3bpp4DateltERKS0_@Base 2.4.1 - _ZNK3bpp4Site11getPositionEv@Base 2.4.1 - _ZNK3bpp4Site5cloneEv@Base 2.4.1 - _ZNK3bpp5Group11getAlphabetEv@Base 2.4.1 - _ZNK3bpp5Group15hasSequenceDataEv@Base 2.4.1 - _ZNK3bpp5Group17getIndividualByIdERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp5Group20getGroupSizeForLocusEm@Base 2.4.1 - _ZNK3bpp5Group21getIndividualPositionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp5Group21hasIndividualGenotypeEm@Base 2.4.1 - _ZNK3bpp5Group22getNumberOfIndividualsEv@Base 2.4.1 - _ZNK3bpp5Group22hasIndividualSequencesEm@Base 2.4.1 - _ZNK3bpp5Group23getGroupSizeForSequenceEm@Base 2.4.1 - _ZNK3bpp5Group23getIndividualAtPositionEm@Base 2.4.1 - _ZNK3bpp5Group23getMaxNumberOfSequencesEv@Base 2.4.1 - _ZNK3bpp5Group26getIndividualSexAtPositionEm@Base 2.4.1 - _ZNK3bpp5Group27getIndividualDateAtPositionEm@Base 2.4.1 - _ZNK3bpp5Group27getIndividualSequenceByNameEmRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp5Group27getIndividualSequencesNamesB5cxx11Em@Base 2.4.1 - _ZNK3bpp5Group28getIndividualCoordAtPositionEm@Base 2.4.1 - _ZNK3bpp5Group29getIndividualSequencePositionEmRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp5Group30getIndividualMonolocusGenotypeEmm@Base 2.4.1 - _ZNK3bpp5Group30getIndividualNumberOfSequencesEm@Base 2.4.1 - _ZNK3bpp5Group31getIndividualLocalityAtPositionEm@Base 2.4.1 - _ZNK3bpp5Group31getIndividualSequenceAtPositionEmm@Base 2.4.1 - _ZNK3bpp7DataSet11getAlphabetEv@Base 2.4.1 - _ZNK3bpp7DataSet11hasLocalityEv@Base 2.4.1 - _ZNK3bpp7DataSet12getGroupByIdEm@Base 2.4.1 - _ZNK3bpp7DataSet12getGroupNameB5cxx11Em@Base 2.4.1 - _ZNK3bpp7DataSet12setGroupNameEmRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 - _ZNK3bpp7DataSet15getAlphabetTypeB5cxx11Ev@Base 2.4.1 - _ZNK3bpp7DataSet15getAnalyzedLociEv@Base 2.4.1 - _ZNK3bpp7DataSet15getNumberOfLociEv@Base 2.4.1 - _ZNK3bpp7DataSet15hasAlleleicDataEv@Base 2.4.1 - _ZNK3bpp7DataSet15hasSequenceDataEv@Base 2.4.1 - _ZNK3bpp7DataSet16getGroupPositionEm@Base 2.4.1 - 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dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-popgen-dev' in '../libbpp-popgen-dev_2.4.1-8_i386.deb'. dpkg-deb: building package 'libbpp-popgen8' in '../libbpp-popgen8_2.4.1-8_i386.deb'. dpkg-deb: building package 'libbpp-popgen8-dbgsym' in '../libbpp-popgen8-dbgsym_2.4.1-8_i386.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-popgen_2.4.1-8_i386.buildinfo dpkg-genchanges --build=binary -O../libbpp-popgen_2.4.1-8_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8462 and its subdirectories I: Current time: Sun Apr 23 02:13:15 -12 2023 I: pbuilder-time-stamp: 1682259195 Sun Apr 23 14:13:17 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Sun Apr 23 14:13:17 UTC 2023 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Sun Apr 23 14:13:59 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. Sun Apr 23 14:13:59 UTC 2023 I: libbpp-popgen_2.4.1-8_i386.changes: Format: 1.8 Date: Sat, 26 Nov 2022 22:11:40 +0100 Source: libbpp-popgen Binary: libbpp-popgen-dev libbpp-popgen8 libbpp-popgen8-dbgsym Architecture: i386 Version: 2.4.1-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbpp-popgen-dev - Bio++ Population Genetics library development files libbpp-popgen8 - Bio++ Population Genetics library Changes: libbpp-popgen (2.4.1-8) unstable; urgency=medium . * Fix watch file Checksums-Sha1: 6a448068ab989404802aa2f36a816f0d1cd24e43 325224 libbpp-popgen-dev_2.4.1-8_i386.deb 4171eb267bdb0a3e678f46a87693f6e002117163 3498672 libbpp-popgen8-dbgsym_2.4.1-8_i386.deb 609d6563b35054690e3fe7e6593b77d87536ec01 248600 libbpp-popgen8_2.4.1-8_i386.deb 855779d810c54e6046e768614ee2166706aff381 6526 libbpp-popgen_2.4.1-8_i386.buildinfo Checksums-Sha256: e53df6435c1672082a4707097108d3f31cd2e4995ed9ec4608cba3ab8a50be0a 325224 libbpp-popgen-dev_2.4.1-8_i386.deb 153bd4c3d8dc8789309983354cd8eed86fc7591b885b3dcb310d50705b5e2e1c 3498672 libbpp-popgen8-dbgsym_2.4.1-8_i386.deb 27b2c78c056ad2f3f146882804caf2b459218dc9283695a296eed886bd23b67c 248600 libbpp-popgen8_2.4.1-8_i386.deb 7535cb4c5b1e3e1ccdb21579325782b36cdc2e668a1e1ed416b2b2feb887e997 6526 libbpp-popgen_2.4.1-8_i386.buildinfo Files: cfd229af93bc0932e40f5ccf71464ef5 325224 libdevel optional libbpp-popgen-dev_2.4.1-8_i386.deb f2be7167ef3178b288ba5b448517f714 3498672 debug optional libbpp-popgen8-dbgsym_2.4.1-8_i386.deb 0c49b15e43a905c41e38e9a6d1717690 248600 libs optional libbpp-popgen8_2.4.1-8_i386.deb 6720f920f34399ec49ba4192a79e78a4 6526 science optional libbpp-popgen_2.4.1-8_i386.buildinfo Sun Apr 23 14:14:00 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.BRI1Bvsv/libbpp-popgen_2.4.1-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.BRI1Bvsv/libbpp-popgen_2.4.1-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.BRI1Bvsv/libbpp-popgen_2.4.1-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.BRI1Bvsv/b1/libbpp-popgen_2.4.1-8_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.BRI1Bvsv/b2/libbpp-popgen_2.4.1-8_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.452s) 0.452s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.069s) 0.069s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sun Apr 23 14:14:02 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 23 14:14:02 UTC 2023 I: libbpp-popgen from bookworm built successfully and reproducibly on i386. Sun Apr 23 14:14:03 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Apr 23 14:14:03 UTC 2023 I: Submitting 8.0K b1/libbpp-popgen_2.4.1-8_i386.buildinfo.asc Sun Apr 23 14:14:04 UTC 2023 I: Submitting 8.0K b2/libbpp-popgen_2.4.1-8_i386.buildinfo.asc Sun Apr 23 14:14:05 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 23 14:14:05 UTC 2023 I: Done submitting .buildinfo files. Sun Apr 23 14:14:05 UTC 2023 I: Removing signed libbpp-popgen_2.4.1-8_i386.buildinfo.asc files: removed './b1/libbpp-popgen_2.4.1-8_i386.buildinfo.asc' removed './b2/libbpp-popgen_2.4.1-8_i386.buildinfo.asc'