Tue May 9 04:34:50 UTC 2023 I: starting to build insilicoseq/bookworm/i386 on jenkins on '2023-05-09 04:34' Tue May 9 04:34:50 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/8910/console.log Tue May 9 04:34:50 UTC 2023 I: Downloading source for bookworm/insilicoseq=1.5.4-6 --2023-05-09 04:34:50-- http://cdn-fastly.deb.debian.org/debian/pool/main/i/insilicoseq/insilicoseq_1.5.4-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1666 (1.6K) [text/prs.lines.tag] Saving to: ‘insilicoseq_1.5.4-6.dsc’ 0K . 100% 155M=0s 2023-05-09 04:34:50 (155 MB/s) - ‘insilicoseq_1.5.4-6.dsc’ saved [1666/1666] Tue May 9 04:34:50 UTC 2023 I: insilicoseq_1.5.4-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: insilicoseq Binary: insilicoseq Architecture: all Version: 1.5.4-6 Maintainer: Debian Med Packaging Team Uploaders: Sao I Kuan , Étienne Mollier Homepage: https://github.com/HadrienG/InSilicoSeq Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/insilicoseq Vcs-Git: https://salsa.debian.org/med-team/insilicoseq.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-biopython, python3-future, python3-joblib, python3-numpy, python3-pysam, python3-requests, python3-scipy, python3-pytest Package-List: insilicoseq deb science optional arch=all Checksums-Sha1: 1b912e8df53b54f2df1c743dbd8ea648c22f0cdb 1886538 insilicoseq_1.5.4.orig.tar.gz 04ef5f63cc28faf7f50941e47190e470fbb79c9c 8456 insilicoseq_1.5.4-6.debian.tar.xz Checksums-Sha256: 517b17c866dab2655e53001a343c00a9c3982359e2ac5f26d293bad0f26af00c 1886538 insilicoseq_1.5.4.orig.tar.gz f697bc6e814c61f93230db31a9146a33866291e40ef79ec7c9aa86b876de81cd 8456 insilicoseq_1.5.4-6.debian.tar.xz Files: f0cc2c185e6f0c0cc56e7a80656fa2af 1886538 insilicoseq_1.5.4.orig.tar.gz 7f59b09a4f028d9d17276264b46514ff 8456 insilicoseq_1.5.4-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCY66p7QAKCRAqJ5BL1yQ+ 2lHQAP4qxGsNsXDvQI4jOkt0wLYTbt9LmaEZZ8NptoCSEDO8kgEAlrILwQJvigT8 JV8Gsu1saR5Zt519RMGCpiP2DOSvXww= =lBj6 -----END PGP SIGNATURE----- Tue May 9 04:34:50 UTC 2023 I: Checking whether the package is not for us Tue May 9 04:34:50 UTC 2023 I: Starting 1st build on remote node ionos6-i386.debian.net. Tue May 9 04:34:50 UTC 2023 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Tue May 9 04:38:23 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 9 22:57:51 -12 2024 I: pbuilder-time-stamp: 1718017071 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [insilicoseq_1.5.4-6.dsc] I: copying [./insilicoseq_1.5.4.orig.tar.gz] I: copying [./insilicoseq_1.5.4-6.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 29 21:05:49 2022 -12 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./insilicoseq_1.5.4-6.dsc: no acceptable signature found dpkg-source: info: extracting insilicoseq in insilicoseq-1.5.4 dpkg-source: info: unpacking insilicoseq_1.5.4.orig.tar.gz dpkg-source: info: unpacking insilicoseq_1.5.4-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying port-to-pytest.patch dpkg-source: info: applying fix-iss.patch dpkg-source: info: applying numpy-1.23.5.patch dpkg-source: info: applying numpy-1.24.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3855/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='df87fac5809342659d23d9c00b374b27' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3855' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WDlpsQfN/pbuilderrc_mQc9 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WDlpsQfN/b1 --logfile b1/build.log insilicoseq_1.5.4-6.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3855/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-biopython, python3-future, python3-joblib, python3-numpy, python3-pysam, python3-requests, python3-scipy, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-future; however: Package python3-future is not installed. pbuilder-satisfydepends-dummy depends on python3-joblib; however: Package python3-joblib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxsimd-dev{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} openssl{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-beniget{a} python3-biopython{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-future{a} python3-gast{a} python3-idna{a} python3-iniconfig{a} python3-joblib{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-py{a} python3-pysam{a} python3-pytest{a} python3-pythran{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-urllib3{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ psmisc publicsuffix python-biopython-doc python3-olefile python3-psutil python3-pygments python3-simplejson shared-mime-info wget xdg-user-dirs 0 packages upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After unpacking 526 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 mailcap all 3.70+nmu1 [32.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 mime-support all 3.66 [10.9 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 13 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 sgml-base all 1.31 [15.4 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.8-1 [1412 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 39 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 41 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-3 [131 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libfontenc1 i386 1:1.1.4-1 [24.5 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 xfonts-utils i386 1:7.7+6 [95.2 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 63 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libimagequant0 i386 2.17.0-1 [32.9 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 libopenblas0-pthread i386 0.3.21+ds-4 [5148 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 liblbfgsb0 i386 3.0+dfsg.4-1 [28.5 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libopenblas0 i386 0.3.21+ds-4 [32.6 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libopenblas-pthread-dev i386 0.3.21+ds-4 [3447 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 libopenblas-dev i386 0.3.21+ds-4 [44.9 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libopenjp2-7 i386 2.5.0-1+b1 [196 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 98 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B] Get: 100 http://deb.debian.org/debian bookworm/main i386 libpython3-all-dev i386 3.11.2-1+b1 [1068 B] Get: 101 http://deb.debian.org/debian bookworm/main i386 libraqm0 i386 0.7.0-4.1 [11.1 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libwebpdemux2 i386 1.2.4-0.1 [99.7 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libwebpmux3 i386 1.2.4-0.1 [111 kB] Get: 106 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libxsimd-dev i386 8.1.0-7 [88.8 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B] Get: 111 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 python3-all-dev i386 3.11.2-1+b1 [1072 B] Get: 114 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 python3-gast all 0.5.2-2 [9364 B] Get: 116 http://deb.debian.org/debian bookworm/main i386 python3-beniget all 0.4.1-3 [9920 B] Get: 117 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 python3-renderpm i386 3.6.12-1+b1 [81.4 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 python3-reportlab-accel i386 3.6.12-1+b1 [39.4 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 python3-pil i386 9.4.0-1.1+b1 [473 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 python3-reportlab all 3.6.12-1 [564 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 xml-core all 0.18+nmu1 [23.8 kB] Get: 124 http://deb.debian.org/debian bookworm/main i386 w3c-sgml-lib all 1.3-3 [273 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 python3-biopython i386 1.80+dfsg-4+b1 [1589 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 python3-certifi all 2022.9.24-1 [153 kB] Get: 127 http://deb.debian.org/debian bookworm/main i386 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 python3-decorator all 5.1.1-3 [14.9 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 python3-future all 0.18.2-6 [348 kB] Get: 131 http://deb.debian.org/debian bookworm/main i386 python3-idna all 3.3-1 [39.4 kB] Get: 132 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 133 http://deb.debian.org/debian bookworm/main i386 python3-joblib all 1.2.0-4 [211 kB] Get: 134 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 python3-ply all 3.11-5 [65.8 kB] Get: 138 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main i386 python3-pysam i386 0.20.0+ds-3+b1 [1708 kB] Get: 140 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB] Get: 141 http://deb.debian.org/debian bookworm/main i386 python3-pythran i386 0.11.0+ds-7 [427 kB] Get: 142 http://deb.debian.org/debian bookworm/main i386 python3-six all 1.16.0-4 [17.5 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 python3-urllib3 all 1.26.12-1 [117 kB] Get: 144 http://deb.debian.org/debian bookworm/main i386 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 145 http://deb.debian.org/debian bookworm/main i386 python3-scipy i386 1.10.1-2 [15.2 MB] Get: 146 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Fetched 107 MB in 2s (54.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19920 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../5-libreadline8_8.2-1.3_i386.deb ... Unpacking libreadline8:i386 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../6-libpython3.11-stdlib_3.11.2-6_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.2-6_i386.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.11.2-1+b1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20378 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:i386. Preparing to unpack .../002-libproc2-0_2%3a4.0.2-3_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.2-3_i386.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.0.8-1_i386.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../008-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../011-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../014-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../025-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../026-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../027-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../028-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../029-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../030-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../031-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../032-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../033-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../034-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../035-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../036-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../037-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../038-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libfontenc1:i386. Preparing to unpack .../039-libfontenc1_1%3a1.1.4-1_i386.deb ... Unpacking libfontenc1:i386 (1:1.1.4-1) ... Selecting previously unselected package libbrotli1:i386. 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Setting up libdeflate0:i386 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libjbig0:i386 (2.1-6.1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up libxsimd-dev:i386 (8.1.0-7) ... Setting up libfontenc1:i386 (1:1.1.4-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.5.0-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:i386 (1.0.8-2.1) ... Setting up libimagequant0:i386 (2.17.0-1) ... Setting up libproc2-0:i386 (2:4.0.2-3) ... Setting up libpng16-16:i386 (1.6.39-2) ... Setting up autopoint (0.21-12) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:i386 (1.2.4-0.1) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:i386 (4.5.0-5) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libopenjp2-7:i386 (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up sgml-base (1.31) ... Setting up libboost-dev:i386 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.8-1) ... Setting up libwebpmux3:i386 (1.2.4-0.1) ... Setting up libbsd0:i386 (0.11.7-2) ... Setting up mailcap (3.70+nmu1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:i386 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/i386-linux-gnu/libopenblas.so.0 (libopenblas.so.0-i386-linux-gnu) in auto mode Setting up mime-support (3.66) ... Setting up libtool (2.4.7-5) ... Setting up libwebpdemux2:i386 (1.2.4-0.1) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libfreetype6:i386 (2.12.1+dfsg-5) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libopenblas0:i386 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up liblbfgsb0:i386 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:i386 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/i386-linux-gnu/libopenblas.so (libopenblas.so-i386-linux-gnu) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up libcurl3-gnutls:i386 (7.88.1-9) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libopenblas-dev:i386 (0.3.21+ds-4) ... Setting up libraqm0:i386 (0.7.0-4.1) ... Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhts3:i386 (1.16+ds-3) ... Setting up libpython3.11:i386 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:i386 (9.4.0-1.1+b1) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up libpython3.11-dev:i386 (3.11.2-6) ... Setting up python3-reportlab-accel:i386 (3.6.12-1+b1) ... Setting up python3-idna (3.3-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-pysam (0.20.0+ds-3+b1) ... Setting up libpython3-dev:i386 (3.11.2-1+b1) ... Setting up python3-renderpm:i386 (3.6.12-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-joblib (1.2.0-4) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3-all-dev:i386 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/insilicoseq-1.5.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../insilicoseq_1.5.4-6_source.changes dpkg-buildpackage: info: source package insilicoseq dpkg-buildpackage: info: source version 1.5.4-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary LC_ALL=C.UTF-8 dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss copying iss/util.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss copying iss/generator.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss copying iss/abundance.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss copying iss/bam.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss copying iss/__main__.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss copying iss/version.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss copying iss/__init__.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss copying iss/download.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss copying iss/app.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss copying iss/modeller.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss creating /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/error_models copying iss/error_models/basic.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/error_models copying iss/error_models/kde.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/error_models copying iss/error_models/perfect.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/error_models copying iss/error_models/__init__.py -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/error_models running egg_info creating InSilicoSeq.egg-info writing InSilicoSeq.egg-info/PKG-INFO writing dependency_links to InSilicoSeq.egg-info/dependency_links.txt writing entry points to InSilicoSeq.egg-info/entry_points.txt writing requirements to InSilicoSeq.egg-info/requires.txt writing top-level names to InSilicoSeq.egg-info/top_level.txt writing manifest file 'InSilicoSeq.egg-info/SOURCES.txt' reading manifest file 'InSilicoSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'InSilicoSeq.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'iss.profiles' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'iss.profiles' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'iss.profiles' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'iss.profiles' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/profiles copying iss/profiles/HiSeq -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/profiles copying iss/profiles/MiSeq -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/profiles copying iss/profiles/NovaSeq -> /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/profiles debian/rules override_dh_auto_test make[1]: Entering directory '/build/insilicoseq-1.5.4' find /build/insilicoseq-1.5.4 -name read_only.fasta| xargs chmod 0444 PYTHONPATH=/build/insilicoseq-1.5.4 pytest-3 -v iss ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /build/insilicoseq-1.5.4 collecting ... collected 42 items iss/test/test_abundance.py::test_parsing PASSED [ 2%] iss/test/test_abundance.py::test_parsing_empty PASSED [ 4%] iss/test/test_abundance.py::test_parsing_no_exists PASSED [ 7%] iss/test/test_abundance.py::test_parsing_bad_abundance PASSED [ 9%] iss/test/test_abundance.py::test_cov_calc PASSED [ 11%] iss/test/test_abundance.py::test_distributions PASSED [ 14%] iss/test/test_abundance.py::test_abunance_draft PASSED [ 16%] iss/test/test_abundance.py::test_coverage_scaling PASSED [ 19%] iss/test/test_bam.py::test_read_fail PASSED [ 21%] iss/test/test_bam.py::test_to_model PASSED [ 23%] iss/test/test_download.py::test_ncbi SKIPPED (unconditional skip) [ 26%] iss/test/test_error_model.py::test_perfect_phred PASSED [ 28%] iss/test/test_error_model.py::test_basic_phred PASSED [ 30%] iss/test/test_error_model.py::test_kde_phred PASSED [ 33%] iss/test/test_error_model.py::test_introduce_errors PASSED [ 35%] iss/test/test_error_model.py::test_mut_sequence PASSED [ 38%] iss/test/test_error_model.py::test_introduce_indels PASSED [ 40%] iss/test/test_error_model.py::test_bad_err_mod PASSED [ 42%] iss/test/test_generator.py::test_cleanup_fail PASSED [ 45%] iss/test/test_generator.py::test_simulate_and_save PASSED [ 47%] iss/test/test_generator.py::test_simulate_and_save_short PASSED [ 50%] iss/test/test_generator.py::test_small_input PASSED [ 52%] iss/test/test_generator.py::test_basic PASSED [ 54%] iss/test/test_generator.py::test_kde PASSED [ 57%] iss/test/test_generator.py::test_kde_short PASSED [ 59%] iss/test/test_modeller.py::test_kde_qualities PASSED [ 61%] iss/test/test_modeller.py::test_substitutions PASSED [ 64%] iss/test/test_modeller.py::test_indels PASSED [ 66%] iss/test/test_util.py::test_phred_conversions PASSED [ 69%] iss/test/test_util.py::test_rev_comp PASSED [ 71%] iss/test/test_util.py::test_count_records PASSED [ 73%] iss/test/test_util.py::test_count_records_empty PASSED [ 76%] iss/test/test_util.py::test_split_list PASSED [ 78%] iss/test/test_util.py::test_convert_n_reads PASSED [ 80%] iss/test/test_util.py::test_convert_n_reads_bad_not_a_number PASSED [ 83%] iss/test/test_util.py::test_convert_n_reads_bad_suffix PASSED [ 85%] iss/test/test_util.py::test_genome_file_exists PASSED [ 88%] iss/test/test_util.py::test_reservoir PASSED [ 90%] iss/test/test_util.py::test_reservoir_invalid_input PASSED [ 92%] iss/test/test_util.py::test_concatenate PASSED [ 95%] iss/test/test_util.py::test_concatenate_read_only PASSED [ 97%] iss/test/test_util.py::test_compress PASSED [100%] =============================== warnings summary =============================== iss/test/test_generator.py::test_simulate_and_save iss/test/test_generator.py::test_simulate_and_save_short /usr/lib/python3/dist-packages/Bio/SeqUtils/__init__.py:144: BiopythonDeprecationWarning: GC is deprecated; please use gc_fraction instead. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 41 passed, 1 skipped, 2 warnings in 15.42s ================== make[1]: Leaving directory '/build/insilicoseq-1.5.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/insilicoseq/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/insilicoseq-1.5.4/debian/insilicoseq running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing InSilicoSeq.egg-info/PKG-INFO writing dependency_links to InSilicoSeq.egg-info/dependency_links.txt writing entry points to InSilicoSeq.egg-info/entry_points.txt writing requirements to InSilicoSeq.egg-info/requires.txt writing top-level names to InSilicoSeq.egg-info/top_level.txt reading manifest file 'InSilicoSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'InSilicoSeq.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'iss.profiles' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'iss.profiles' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'iss.profiles' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'iss.profiles' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running install_lib creating /build/insilicoseq-1.5.4/debian/insilicoseq/usr creating /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib creating /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11 creating /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages creating /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/util.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/generator.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/abundance.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/bam.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss creating /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/profiles copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/profiles/MiSeq -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/profiles copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/profiles/NovaSeq -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/profiles copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/profiles/HiSeq -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/profiles creating /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/error_models copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/error_models/basic.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/error_models copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/error_models/kde.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/error_models copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/error_models/perfect.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/error_models copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/error_models/__init__.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/error_models copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/__main__.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/version.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/__init__.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/download.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/app.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss copying /build/insilicoseq-1.5.4/.pybuild/cpython3_3.11_insilicoseq/build/iss/modeller.py -> /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/util.py to util.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/generator.py to generator.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/abundance.py to abundance.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/bam.py to bam.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/error_models/basic.py to basic.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/error_models/kde.py to kde.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/error_models/perfect.py to perfect.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/error_models/__init__.py to __init__.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/__main__.py to __main__.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/version.py to version.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/__init__.py to __init__.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/download.py to download.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/app.py to app.cpython-311.pyc byte-compiling /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/iss/modeller.py to modeller.cpython-311.pyc running install_egg_info Copying InSilicoSeq.egg-info to /build/insilicoseq-1.5.4/debian/insilicoseq/usr/lib/python3.11/dist-packages/InSilicoSeq-1.5.4.egg-info Skipping SOURCES.txt running install_scripts Installing iss script to /build/insilicoseq-1.5.4/debian/insilicoseq/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/insilicoseq-1.5.4' dh_installexamples find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/insilicoseq-1.5.4' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/insilicoseq-1.5.4' dh_fixperms find debian/ -name read_only.fasta| xargs chmod 0444 make[1]: Leaving directory '/build/insilicoseq-1.5.4' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package insilicoseq: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package insilicoseq: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'insilicoseq' in '../insilicoseq_1.5.4-6_all.deb'. dpkg-genbuildinfo --build=binary -O../insilicoseq_1.5.4-6_i386.buildinfo dpkg-genchanges --build=binary -O../insilicoseq_1.5.4-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3855 and its subdirectories I: Current time: Sun Jun 9 23:01:20 -12 2024 I: pbuilder-time-stamp: 1718017280 Tue May 9 04:38:23 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Tue May 9 04:38:23 UTC 2023 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Tue May 9 04:40:48 UTC 2023 I: Deleting $TMPDIR on ionos12-i386.debian.net. Tue May 9 04:40:49 UTC 2023 I: insilicoseq_1.5.4-6_i386.changes: Format: 1.8 Date: Fri, 30 Dec 2022 14:31:02 +0530 Source: insilicoseq Binary: insilicoseq Architecture: all Version: 1.5.4-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: insilicoseq - sequencing simulator producing realistic Illumina reads Changes: insilicoseq (1.5.4-6) unstable; urgency=medium . * Team Upload. * Update numpy patch, fix it for reals this time Checksums-Sha1: 093531ee454d5e39ce8b18b7126f7e980ed0b1df 1469840 insilicoseq_1.5.4-6_all.deb 9575ed27a3a9d61f854c6578c95e4a3a51a0efd2 8567 insilicoseq_1.5.4-6_i386.buildinfo Checksums-Sha256: e2e6c1438186840a8cb40021a99e0f31e2aa5dd5c03d7e22aceeac207ccb4d03 1469840 insilicoseq_1.5.4-6_all.deb a56f22915a586ada33613b4985502fca61bde72a2e864cec5182ccb8acbdb65a 8567 insilicoseq_1.5.4-6_i386.buildinfo Files: e315ecfd13c98f63ea3ad288ddc23578 1469840 science optional insilicoseq_1.5.4-6_all.deb 016d0ddaae57d85a717c45480ec06e45 8567 science optional insilicoseq_1.5.4-6_i386.buildinfo Tue May 9 04:40:50 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.WDlpsQfN/insilicoseq_1.5.4-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.WDlpsQfN/insilicoseq_1.5.4-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.WDlpsQfN/insilicoseq_1.5.4-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.WDlpsQfN/b1/insilicoseq_1.5.4-6_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.WDlpsQfN/b2/insilicoseq_1.5.4-6_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.308s) 0.308s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue May 9 04:40:51 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Tue May 9 04:40:51 UTC 2023 I: insilicoseq from bookworm built successfully and reproducibly on i386. Tue May 9 04:40:52 UTC 2023 I: Submitting .buildinfo files to external archives: Tue May 9 04:40:52 UTC 2023 I: Submitting 12K b1/insilicoseq_1.5.4-6_i386.buildinfo.asc Tue May 9 04:40:52 UTC 2023 I: Submitting 12K b2/insilicoseq_1.5.4-6_i386.buildinfo.asc Tue May 9 04:40:53 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 9 04:40:53 UTC 2023 I: Done submitting .buildinfo files. Tue May 9 04:40:53 UTC 2023 I: Removing signed insilicoseq_1.5.4-6_i386.buildinfo.asc files: removed './b1/insilicoseq_1.5.4-6_i386.buildinfo.asc' removed './b2/insilicoseq_1.5.4-6_i386.buildinfo.asc'