Sat Apr 22 12:52:31 UTC 2023 I: starting to build hts-nim-tools/bookworm/i386 on jenkins on '2023-04-22 12:50' Sat Apr 22 12:52:31 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/8198/console.log Sat Apr 22 12:52:31 UTC 2023 I: Downloading source for bookworm/hts-nim-tools=0.2.1-1 --2023-04-22 12:52:31-- http://cdn-fastly.deb.debian.org/debian/pool/main/h/hts-nim-tools/hts-nim-tools_0.2.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2248 (2.2K) [text/prs.lines.tag] Saving to: ‘hts-nim-tools_0.2.1-1.dsc’ 0K .. 100% 67.1M=0s 2023-04-22 12:52:31 (67.1 MB/s) - ‘hts-nim-tools_0.2.1-1.dsc’ saved [2248/2248] Sat Apr 22 12:52:31 UTC 2023 I: hts-nim-tools_0.2.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hts-nim-tools Binary: hts-nim-tools Architecture: any Version: 0.2.1-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra Homepage: https://github.com/brentp/hts-nim-tools Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/hts-nim-tools Vcs-Git: https://salsa.debian.org/med-team/hts-nim-tools.git Testsuite: autopkgtest Testsuite-Triggers: libhts-dev, nim-hts-examples Build-Depends: debhelper-compat (= 13), nim, nim-hts-dev, nim-docopt-dev, nim-unicodedb-dev, nim-unicodeplus-dev, nim-regex-dev, nim-kexpr-dev, nim-lapper-dev, help2man, libhts-dev Package-List: hts-nim-tools deb science optional arch=any Checksums-Sha1: 33b7d1ecb485e9d5df926f52a23d52632092fbe7 6803 hts-nim-tools_0.2.1.orig.tar.gz c6f3f9d0becd7237f6a49614725c37559af88226 3496 hts-nim-tools_0.2.1-1.debian.tar.xz Checksums-Sha256: fdb2a2f867b45d568c26f1b416f487a47746872678f9b9d3179665c89e2330c7 6803 hts-nim-tools_0.2.1.orig.tar.gz 985f7e13c54621f037ed09cc1ce5206adf32b1d769baf7430f7c7e740e7805be 3496 hts-nim-tools_0.2.1-1.debian.tar.xz Files: 64901b12bc69b071403330341fe3ae52 6803 hts-nim-tools_0.2.1.orig.tar.gz 0ec82dc1c7d453b6f4dcb40f176d07a3 3496 hts-nim-tools_0.2.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl+u0WsUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEErg/+IyZDyCAfauhM73ViOQpX5ivAfcvC plsRfOTT0QVA32wRq1Y6dEfp0Q3DR+zg6zKDzfIdHCbI/yvwBtcA4iSZ+LY4rQOU AkaiMsS64UtQeqru5dF3kKjZM41Uase+6SSc7aowFjGbwA893Q4Jp8OaUca1xkv1 vMA/yPRIwC4GSYEVZGLWUb7GbXhDSBf65SoGFdb5JAlq5SuUnL9ABF6ZWv04ZE0D QCqbT0rptivH4h03J0kafY6GZFlVQv0XWxelg/BzHsbAAXYwrji4BwnK5nmmeRQJ B6ebMLfzWs8M7acSdOg8KXs0x3NoDFLirzFp6+puq8aBtaKnilbVAdK9RkYzEeFP DnX8dcX/eVi8Cj8VHDJCmLYrry59R2fLt3Ab3w+rWcLfidRFH6rJC41A6j/x8SN7 KE/zZG0G2i5Cacz6WKGuoVyTbRGRKI8sm695GxBlSfqVL+4NJdFN24OXy+3bFFa+ q+/s0LKbezulRbexQpllOY+gYilI10Vy6RJ6jUQHLVJ8W9QgVXQfxp9c1QY0PRG+ 5OjaPDYYXXuTnzIdV/1ggoGpKBhZbh7MxyFT+7i/fZymYgN1kPWeokN9j7iFfaSS gUsDd27DPhtDpd55JGZ1nVCni+8BFw+SV5o7IXBI5rZu74tdgUaDiqu6JKuuJ2nd 9LeUP/TWMiMMhiA= =Qnpi -----END PGP SIGNATURE----- Sat Apr 22 12:52:31 UTC 2023 I: Checking whether the package is not for us Sat Apr 22 12:52:31 UTC 2023 I: Starting 1st build on remote node ionos12-i386.debian.net. Sat Apr 22 12:52:31 UTC 2023 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Sat Apr 22 12:59:10 UTC 2023 I: Deleting $TMPDIR on ionos12-i386.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 22 00:56:32 -12 2023 I: pbuilder-time-stamp: 1682168192 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [hts-nim-tools_0.2.1-1.dsc] I: copying [./hts-nim-tools_0.2.1.orig.tar.gz] I: copying [./hts-nim-tools_0.2.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 13 06:33:15 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./hts-nim-tools_0.2.1-1.dsc: no acceptable signature found dpkg-source: info: extracting hts-nim-tools in hts-nim-tools-0.2.1 dpkg-source: info: unpacking hts-nim-tools_0.2.1.orig.tar.gz dpkg-source: info: unpacking hts-nim-tools_0.2.1-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8860/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8860' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0apkvzxD/pbuilderrc_FuUq --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0apkvzxD/b1 --logfile b1/build.log hts-nim-tools_0.2.1-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Feb 12 08:21 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 08:21 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/8860/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, nim-hts-dev, nim-docopt-dev, nim-unicodedb-dev, nim-unicodeplus-dev, nim-regex-dev, nim-kexpr-dev, nim-lapper-dev, help2man, libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on nim-hts-dev; however: Package nim-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-docopt-dev; however: Package nim-docopt-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-unicodedb-dev; however: Package nim-unicodedb-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-unicodeplus-dev; however: Package nim-unicodeplus-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-regex-dev; however: Package nim-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-kexpr-dev; however: Package nim-kexpr-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-lapper-dev; however: Package nim-lapper-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpcre3{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} nim{a} nim-docopt-dev{a} nim-hts-dev{a} nim-kexpr-dev{a} nim-lapper-dev{a} nim-regex-dev{a} nim-unicodedb-dev{a} nim-unicodeplus-dev{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl git libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 29.9 MB of archives. After unpacking 109 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 liblocale-gettext-perl i386 1.07-5 [15.5 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 22 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 help2man i386 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-8 [412 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libcurl4-gnutls-dev i386 7.88.1-8 [527 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libdeflate-dev i386 1.14-1 [53.5 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 liblzma-dev i386 5.4.1-0.2 [272 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libhts-dev i386 1.16+ds-3 [1585 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libpcre3 i386 2:8.39-15 [340 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 nim i386 1.6.10-2 [4530 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 nim-unicodedb-dev all 0.9.0-2 [423 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 nim-unicodeplus-dev all 0.5.1-2 [5340 B] Get: 54 http://deb.debian.org/debian bookworm/main i386 nim-regex-dev all 0.17.0+ds-2 [41.2 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 nim-docopt-dev all 0.6.8-3 [10.6 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 nim-hts-dev all 0.3.19+ds-1 [35.7 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 nim-kexpr-dev all 0.0.2-3 [7976 B] Get: 58 http://deb.debian.org/debian bookworm/main i386 nim-lapper-dev all 0.1.7-5 [7356 B] Fetched 29.9 MB in 1s (21.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_i386.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. 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Setting up autotools-dev (20220109.1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up autopoint (0.21-12) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:i386 (5.4.1-0.2) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up nim (1.6.10-2) ... Setting up libdeflate-dev:i386 (1.14-1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.1+b3) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up nim-unicodeplus-dev (0.5.1-2) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up nim-hts-dev (0.3.19+ds-1) ... Setting up nim-regex-dev (0.17.0+ds-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up nim-docopt-dev (0.6.8-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:i386 (7.88.1-8) ... Setting up libcurl4-gnutls-dev:i386 (7.88.1-8) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhts3:i386 (1.16+ds-3) ... Setting up libhts-dev:i386 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/hts-nim-tools-0.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hts-nim-tools_0.2.1-1_source.changes dpkg-buildpackage: info: source package hts-nim-tools dpkg-buildpackage: info: source version 0.2.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/hts-nim-tools-0.2.1' rm -f src/version src/vcf_check src/bam_filter src/hts_nim_tools src/count_reads src/copy_number_sampler rm -rf /build/hts-nim-tools-0.2.1/nimcache rm -rf bin make[1]: Leaving directory '/build/hts-nim-tools-0.2.1' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/hts-nim-tools.substvars debian/files rm -fr -- debian/hts-nim-tools/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/hts-nim-tools-0.2.1' #nim c --nimcache:/build/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/hts src/vcf_check.nim #nim c --nimcache:/build/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/kexpr -p:/usr/share/nimble/hts src/bam_filter.nim #nim c --nimcache:/build/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/share/nimble/hts src/count_reads.nim #nim c --nimcache:/build/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/lib/nim/pure -p:/usr/share/nimble/hts src/copy_number_sampler.nim nim c --debuginfo:on --nimcache:/build/hts-nim-tools-0.2.1/nimcache --out:bin/hts-nim-tools -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/share/nimble/kexpr -p:/usr/lib/nim/pure -p:/usr/share/nimble/hts src/hts_nim_tools.nim Hint: used config file '/etc/nim/nim.cfg' [Conf] Hint: used config file '/etc/nim/config.nims' [Conf] ........................................................................................................................................ /build/hts-nim-tools-0.2.1/src/bam_filter.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(1, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(2, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(3, 8) Hint: duplicate import of 'sequtils'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(3, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(4, 8) Hint: duplicate import of 'strutils'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(4, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(5, 8) Hint: duplicate import of 'tables'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(5, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(6, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(6, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(7, 8) Hint: duplicate import of 'docopt'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(7, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(8, 8) Hint: duplicate import of 'kexpr'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(8, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(10, 8) Hint: duplicate import of 'version'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(10, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(53, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args[""]; this will become a compile time error in the future [CStringConv] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(94, 42) Warning: implicit conversion to 'cstring' from a non-const location: "tag_" & itag; this will become a compile time error in the future [CStringConv] /build/hts-nim-tools-0.2.1/src/bam_filter.nim(98, 43) Warning: implicit conversion to 'cstring' from a non-const location: "tag_" & itag; this will become a compile time error in the future [CStringConv] . /build/hts-nim-tools-0.2.1/src/count_reads.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(1, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/count_reads.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(2, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/count_reads.nim(3, 8) Hint: duplicate import of 'docopt'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(7, 8) [DuplicateModuleImport] . /build/hts-nim-tools-0.2.1/src/count_reads.nim(5, 8) Hint: duplicate import of 'strutils'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(4, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/count_reads.nim(6, 8) Hint: duplicate import of 'tables'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(5, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/count_reads.nim(7, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(6, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/count_reads.nim(9, 8) Hint: duplicate import of 'version'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(10, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/count_reads.nim(116, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args[""]; this will become a compile time error in the future [CStringConv] . /build/hts-nim-tools-0.2.1/src/vcf_check.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(1, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/vcf_check.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(2, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/vcf_check.nim(3, 8) Hint: duplicate import of 'docopt'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(3, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/vcf_check.nim(4, 8) Hint: duplicate import of 'strutils'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(5, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/vcf_check.nim(6, 8) Hint: duplicate import of 'version'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(9, 8) [DuplicateModuleImport] . /build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/hts-nim-tools-0.2.1/src/vcf_check.nim(1, 8) [DuplicateModuleImport] .... /build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(3, 8) Hint: duplicate import of 'hts'; previous import here: /build/hts-nim-tools-0.2.1/src/vcf_check.nim(2, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(4, 8) Hint: duplicate import of 'docopt'; previous import here: /build/hts-nim-tools-0.2.1/src/vcf_check.nim(3, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(5, 8) Hint: duplicate import of 'lapper'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(4, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(6, 8) Hint: duplicate import of 'strutils'; previous import here: /build/hts-nim-tools-0.2.1/src/vcf_check.nim(4, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(7, 8) Hint: duplicate import of 'tables'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(6, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(8, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(7, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(10, 8) Hint: duplicate import of 'version'; previous import here: /build/hts-nim-tools-0.2.1/src/vcf_check.nim(6, 8) [DuplicateModuleImport] /build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(130, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args[""]; this will become a compile time error in the future [CStringConv] CC: kexpr-c CC: ../../../usr/lib/nim/lib/std/private/digitsutils.nim CC: ../../../usr/lib/nim/lib/system/assertions.nim CC: ../../../usr/lib/nim/lib/system/formatfloat.nim CC: ../../../usr/lib/nim/lib/system/dollars.nim CC: ../../../usr/lib/nim/lib/system/io.nim CC: ../../../usr/lib/nim/lib/system.nim CC: ../../../usr/lib/nim/lib/pure/parseutils.nim CC: ../../../usr/lib/nim/lib/pure/bitops.nim CC: ../../../usr/lib/nim/lib/pure/math.nim CC: ../../../usr/lib/nim/lib/pure/algorithm.nim CC: ../../../usr/lib/nim/lib/pure/unicode.nim CC: ../../../usr/lib/nim/lib/pure/strutils.nim CC: ../../../usr/lib/nim/lib/pure/times.nim CC: ../../../usr/lib/nim/lib/pure/os.nim CC: ../../../usr/share/nimble/hts/hts/private/hts_concat.nim CC: ../../../usr/lib/nim/lib/pure/strformat.nim CC: ../../../usr/share/nimble/hts/hts/bam.nim CC: ../../../usr/lib/nim/lib/pure/collections/sequtils.nim CC: ../../../usr/share/nimble/hts/hts/vcf.nim CC: ../../../usr/share/nimble/hts/hts.nim CC: ../../../usr/lib/nim/lib/pure/hashes.nim CC: ../../../usr/lib/nim/lib/pure/collections/tables.nim CC: ../../../usr/lib/nim/lib/pure/collections/sets.nim CC: ../../../usr/share/nimble/unicodedb/unicodedb/properties_data.nim CC: ../../../usr/share/nimble/unicodedb/unicodedb/properties.nim CC: ../../../usr/share/nimble/regex/regex/common.nim CC: ../../../usr/share/nimble/regex/regex/nodetype.nim CC: ../../../usr/share/nimble/regex/regex/exptransformation.nim CC: ../../../usr/share/nimble/regex/regex/nfa.nim CC: ../../../usr/share/nimble/unicodedb/unicodedb/types_data.nim CC: ../../../usr/share/nimble/unicodedb/unicodedb/types.nim CC: ../../../usr/share/nimble/unicodeplus/unicodeplus.nim CC: ../../../usr/share/nimble/regex/regex/nodematch.nim CC: ../../../usr/share/nimble/regex/regex/litopt.nim CC: ../../../usr/share/nimble/regex/regex/nfatype.nim CC: ../../../usr/share/nimble/regex/regex/nfafindall.nim CC: ../../../usr/share/nimble/regex/regex/nfamatch.nim CC: ../../../usr/share/nimble/docopt/docopt/util.nim CC: ../../../usr/share/nimble/docopt/docopt.nim CC: ../../../usr/share/nimble/kexpr/kexpr.nim CC: version.nim CC: ../../../usr/share/nimble/lapper/lapper.nim CC: ../../../usr/lib/nim/lib/std/sysrand.nim CC: ../../../usr/lib/nim/lib/pure/random.nim CC: hts_nim_tools.nim Hint: [Link] Hint: gc: refc; opt: none (DEBUG BUILD, `-d:release` generates faster code) 87855 lines; 8.429s; 149.223MiB peakmem; proj: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim; out: /build/hts-nim-tools-0.2.1/bin/hts-nim-tools [SuccessX] help2man --no-info --no-discard-stderr --help-option="-h" ./bin/hts-nim-tools > debian/hts-nim-tools.1 make[1]: Leaving directory '/build/hts-nim-tools-0.2.1' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/hts-nim-tools.substvars rm -fr -- debian/.debhelper/generated/hts-nim-tools/ debian/hts-nim-tools/ debian/tmp/ dh_installdirs install -m0755 -d debian/hts-nim-tools/usr/bin dh_auto_install --destdir=debian/hts-nim-tools/ install -m0755 -d /build/hts-nim-tools-0.2.1/debian/hts-nim-tools dh_install install -m0755 -d debian/hts-nim-tools/usr/bin/ cp --reflink=auto -a ./bin/hts-nim-tools debian/hts-nim-tools/usr/bin// dh_installdocs install -m0755 -d debian/hts-nim-tools/usr/share/doc/hts-nim-tools install -p -m0644 debian/copyright debian/hts-nim-tools/usr/share/doc/hts-nim-tools/copyright dh_installchangelogs install -m0755 -d debian/hts-nim-tools/usr/share/doc/hts-nim-tools install -p -m0644 debian/.debhelper/generated/hts-nim-tools/dh_installchangelogs.dch.trimmed debian/hts-nim-tools/usr/share/doc/hts-nim-tools/changelog.Debian dh_installman install -m0755 -d debian/hts-nim-tools/usr/share/man/man1/ install -p -m0644 ./debian/hts-nim-tools.1 debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 mv debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1.dh-new debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 chmod 0644 -- debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 dh_lintian install -m0755 -d debian/hts-nim-tools/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/hts-nim-tools/usr/share/lintian/overrides/hts-nim-tools dh_perl dh_link install -m0755 -d debian/hts-nim-tools/usr/bin rm -f debian/hts-nim-tools/usr/bin/hts_nim_tools ln -s hts-nim-tools debian/hts-nim-tools/usr/bin/hts_nim_tools dh_strip_nondeterminism dh_compress cd debian/hts-nim-tools chmod a-x usr/share/doc/hts-nim-tools/changelog.Debian usr/share/man/man1/hts-nim-tools.1 gzip -9nf usr/share/doc/hts-nim-tools/changelog.Debian usr/share/man/man1/hts-nim-tools.1 cd '/build/hts-nim-tools-0.2.1' dh_fixperms find debian/hts-nim-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/hts-nim-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/hts-nim-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/hts-nim-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/hts-nim-tools/usr/share/man debian/hts-nim-tools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/hts-nim-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/hts-nim-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing debian/rules override_dh_dwz make[1]: Entering directory '/build/hts-nim-tools-0.2.1' echo "I: not executing dwz, which fails because of Unknown DWARF DW_OP_0" I: not executing dwz, which fails because of Unknown DWARF DW_OP_0 make[1]: Leaving directory '/build/hts-nim-tools-0.2.1' dh_strip -a install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/35 objcopy --only-keep-debug --compress-debug-sections debian/hts-nim-tools/usr/bin/hts-nim-tools debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/35/35b9cb03742f9e51cecdd578902da04eef2f2c.debug chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/35/35b9cb03742f9e51cecdd578902da04eef2f2c.debug strip --remove-section=.comment --remove-section=.note debian/hts-nim-tools/usr/bin/hts-nim-tools objcopy --add-gnu-debuglink debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/35/35b9cb03742f9e51cecdd578902da04eef2f2c.debug debian/hts-nim-tools/usr/bin/hts-nim-tools install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/usr/share/doc ln -s hts-nim-tools debian/.debhelper/hts-nim-tools/dbgsym-root/usr/share/doc/hts-nim-tools-dbgsym install -m0755 -d debian/.debhelper/hts-nim-tools dh_makeshlibs -a rm -f debian/hts-nim-tools/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/hts-nim-tools/DEBIAN dpkg-shlibdeps -Tdebian/hts-nim-tools.substvars debian/hts-nim-tools/usr/bin/hts-nim-tools dh_installdeb install -m0755 -d debian/hts-nim-tools/DEBIAN dh_gencontrol install -m0755 -d debian/hts-nim-tools/DEBIAN echo misc:Depends= >> debian/hts-nim-tools.substvars echo misc:Pre-Depends= >> debian/hts-nim-tools.substvars install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN dpkg-gencontrol -phts-nim-tools -ldebian/changelog -Tdebian/hts-nim-tools.substvars -Pdebian/.debhelper/hts-nim-tools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=hts-nim-tools-dbgsym "-DDepends=hts-nim-tools (= \${binary:Version})" "-DDescription=debug symbols for hts-nim-tools" -DBuild-Ids=3535b9cb03742f9e51cecdd578902da04eef2f2c -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN/control dpkg-gencontrol -phts-nim-tools -ldebian/changelog -Tdebian/hts-nim-tools.substvars -Pdebian/hts-nim-tools chmod 0644 -- debian/hts-nim-tools/DEBIAN/control dh_md5sums install -m0755 -d debian/hts-nim-tools/DEBIAN cd debian/hts-nim-tools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/hts-nim-tools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN cd debian/.debhelper/hts-nim-tools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/hts-nim-tools .. dpkg-deb --root-owner-group --build debian/.debhelper/hts-nim-tools/dbgsym-root .. dpkg-deb: building package 'hts-nim-tools' in '../hts-nim-tools_0.2.1-1_i386.deb'. dpkg-deb: building package 'hts-nim-tools-dbgsym' in '../hts-nim-tools-dbgsym_0.2.1-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../hts-nim-tools_0.2.1-1_i386.buildinfo dpkg-genchanges --build=binary -O../hts-nim-tools_0.2.1-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8860 and its subdirectories I: Current time: Sat Apr 22 00:57:10 -12 2023 I: pbuilder-time-stamp: 1682168230 Sat Apr 22 13:01:10 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Sat Apr 22 13:01:10 UTC 2023 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Sat Apr 22 13:01:40 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. Sat Apr 22 13:01:40 UTC 2023 I: hts-nim-tools_0.2.1-1_i386.changes: Format: 1.8 Date: Fri, 13 Nov 2020 23:59:28 +0530 Source: hts-nim-tools Binary: hts-nim-tools hts-nim-tools-dbgsym Architecture: i386 Version: 0.2.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: hts-nim-tools - tools biological sequences: bam-filter, count-reads, vcf-check Changes: hts-nim-tools (0.2.1-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 076e175eda00a3161f7d73149e3ac68c5ca2a8f8 616648 hts-nim-tools-dbgsym_0.2.1-1_i386.deb 46759c2582bbae3d0b3aca5e164f47f177df12c4 6146 hts-nim-tools_0.2.1-1_i386.buildinfo e684eecd4c27db33dfe22c4ad8db2ca3e3504bc0 168476 hts-nim-tools_0.2.1-1_i386.deb Checksums-Sha256: b0cbfccab382fb256e468c04b2b37f39cc41ff82b1d4e3effd7725e876042c1d 616648 hts-nim-tools-dbgsym_0.2.1-1_i386.deb f3713265cc0d25be077708ad23e13f238d54d89e31ba4947a4656e76957cd6b0 6146 hts-nim-tools_0.2.1-1_i386.buildinfo e64a49575762f246036e75bc25979feeea549fa6d8e2e89d83e0c2e338c9c7b1 168476 hts-nim-tools_0.2.1-1_i386.deb Files: b7be23877bc160bd81dc7f5a92101ca1 616648 debug optional hts-nim-tools-dbgsym_0.2.1-1_i386.deb fec30e41a962fa4b76bf67dd86d9d9d3 6146 science optional hts-nim-tools_0.2.1-1_i386.buildinfo b05667870bf2c7b74f4e74207dc398e1 168476 science optional hts-nim-tools_0.2.1-1_i386.deb Sat Apr 22 13:01:42 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0apkvzxD/hts-nim-tools_0.2.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0apkvzxD/hts-nim-tools_0.2.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0apkvzxD/hts-nim-tools_0.2.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0apkvzxD/b1/hts-nim-tools_0.2.1-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.0apkvzxD/b2/hts-nim-tools_0.2.1-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.617s) 0.617s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.029s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sat Apr 22 13:01:43 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 22 13:01:43 UTC 2023 I: hts-nim-tools from bookworm built successfully and reproducibly on i386. Sat Apr 22 13:01:45 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Apr 22 13:01:45 UTC 2023 I: Submitting 8.0K b1/hts-nim-tools_0.2.1-1_i386.buildinfo.asc Sat Apr 22 13:01:46 UTC 2023 I: Submitting 8.0K b2/hts-nim-tools_0.2.1-1_i386.buildinfo.asc Sat Apr 22 13:01:47 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 22 13:01:47 UTC 2023 I: Done submitting .buildinfo files. Sat Apr 22 13:01:47 UTC 2023 I: Removing signed hts-nim-tools_0.2.1-1_i386.buildinfo.asc files: removed './b1/hts-nim-tools_0.2.1-1_i386.buildinfo.asc' removed './b2/hts-nim-tools_0.2.1-1_i386.buildinfo.asc'