Fri Jun 2 22:02:27 UTC 2023 I: starting to build gemmi/bookworm/i386 on jenkins on '2023-06-02 22:02' Fri Jun 2 22:02:27 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/241/console.log Fri Jun 2 22:02:27 UTC 2023 I: Downloading source for bookworm/gemmi=0.5.7+ds-2 --2023-06-02 22:02:28-- http://cdn-fastly.deb.debian.org/debian/pool/main/g/gemmi/gemmi_0.5.7%2bds-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2280 (2.2K) [text/prs.lines.tag] Saving to: ‘gemmi_0.5.7+ds-2.dsc’ 0K .. 100% 125M=0s 2023-06-02 22:02:28 (125 MB/s) - ‘gemmi_0.5.7+ds-2.dsc’ saved [2280/2280] Fri Jun 2 22:02:28 UTC 2023 I: gemmi_0.5.7+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gemmi Binary: gemmi, gemmi-dev, python3-gemmi Architecture: any Version: 0.5.7+ds-2 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://project-gemmi.github.io Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/debichem-team/gemmi Vcs-Git: https://salsa.debian.org/debichem-team/gemmi.git Testsuite: autopkgtest Testsuite-Triggers: python3-numpy, python3-pytest Build-Depends: cmake, debhelper-compat (= 13), dh-python, doctest-dev, help2man, libstb-dev, python3-dev, python3-numpy , python3-pybind11 (>= 2.6.0), python3-pytest , tao-pegtl-dev, zlib1g-dev Package-List: gemmi deb science optional arch=any gemmi-dev deb libdevel optional arch=any python3-gemmi deb python optional arch=any Checksums-Sha1: 66676f60f8b5318a520253c4e3f186283d6dbb17 1203364 gemmi_0.5.7+ds.orig.tar.xz 45b60c96bc4ff552d8bf14bf959fa458ed13ec06 6100 gemmi_0.5.7+ds-2.debian.tar.xz Checksums-Sha256: 72fcf69036b66df26811e1c700ac0644611d014871bc7cd8e8b677e1c338c526 1203364 gemmi_0.5.7+ds.orig.tar.xz 3dc60eb2e92f4833f8f1c8c538cc42d8033aac6d087a3da3d8a5875a8ae184c3 6100 gemmi_0.5.7+ds-2.debian.tar.xz Files: 0bc7480248682d4c99586cdf7ca03a2b 1203364 gemmi_0.5.7+ds.orig.tar.xz 8fff785fb62e932d93d9fc2e610116a7 6100 gemmi_0.5.7+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmM777QSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHWngP/1P7+4QR2r3xxE/fMUxYhOkYTWGDGfdi YyaGHsgfZYvcVgluHtSceMD4D5ZS+Pd31ob0tT7OyQR4TsPbGdnBWegvgaC2MUvY uDBgRrkFGYaUfTunSoedXP5maM3/gNWwGylGokj3cI93w/VBF4Q2ZtWCyaNN55Rs 4MieZ3VcRA/AUB3hkdfe4/chVW5Pc2ed84q5pKps9ysHsgVsNap574kHizsG0/Rr aU2YwjPdncHgllpl42kMeKEoa5XroFvud3b53fFPhdBmCrodqxSq1W736BGGNrqx VmLlnnllvCQ1PBJQxDyg2H0ekwPf4nFxDFX+jl3InWPiwMHQkgdg2cBywIUNz/1o QsyfbR0HUPfom6bkcBLhIXrRzmx2VCjmgB9fVzrOp7NZWShnonkMErkcJ+XxdUzf LJ5CP+yGTdHbc92htab1eV089O909jNfDDsGzFzdpghKI9/W95oTtItxntwpk0u4 ST2KCl/ATsgem86xcoFrRdVtL4lW9KmSVzwtlLr7aVVccSBnvrP2KANqgrhkVKr1 2FP/XVuo4HIpm/+//6ZIgmmYrmNNmnlpnmraO72jBIbL9vWg2K3E4cE5UHVH0Fo8 IAuFqlf7kYW951nu+LOdzC7a7EwQ1ze0Fa/APcThksOWF09DN1mCvBuwXc27OpaI EeOTop3qQGtK =Vfn3 -----END PGP SIGNATURE----- Fri Jun 2 22:02:28 UTC 2023 I: Checking whether the package is not for us Fri Jun 2 22:02:28 UTC 2023 I: Starting 1st build on remote node ionos12-i386.debian.net. Fri Jun 2 22:02:28 UTC 2023 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Fri Jun 2 22:19:52 UTC 2023 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 2 10:02:29 -12 2023 I: pbuilder-time-stamp: 1685743349 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [gemmi_0.5.7+ds-2.dsc] I: copying [./gemmi_0.5.7+ds.orig.tar.xz] I: copying [./gemmi_0.5.7+ds-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Oct 3 20:32:52 2022 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./gemmi_0.5.7+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting gemmi in gemmi-0.5.7+ds dpkg-source: info: unpacking gemmi_0.5.7+ds.orig.tar.xz dpkg-source: info: unpacking gemmi_0.5.7+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-tao-pegtl.patch dpkg-source: info: applying use-system-doctest.patch dpkg-source: info: applying tao-pegtl-3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9264/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='0182e530bb0c4e7f9efa2806626169a1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9264' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.40UQ7W41/pbuilderrc_NeoO --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.40UQ7W41/b1 --logfile b1/build.log gemmi_0.5.7+ds-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 5.10.0-23-686-pae #1 SMP Debian 5.10.179-1 (2023-05-12) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/9264/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, doctest-dev, help2man, libstb-dev, python3-dev, python3-numpy, python3-pybind11 (>= 2.6.0), python3-pytest, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19599 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on doctest-dev; however: Package doctest-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libstb-dev; however: Package libstb-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11 (>= 2.6.0); however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} doctest-dev{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas3{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} liblapack3{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libstb-dev{a} libstb0{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} pybind11-dev{a} python3{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pybind11{a} python3-pytest{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tao-pegtl-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libeigen3-dev libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix python3-pygments wget 0 packages upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 60.5 MB of archives. After unpacking 234 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 liblocale-gettext-perl i386 1.07-5 [15.5 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 12 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libarchive13 i386 3.6.2-1 [385 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-10 [420 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libjsoncpp25 i386 1.9.5-4 [86.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 librhash0 i386 1.4.3-3 [149 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libuv1 i386 1.44.2-1 [147 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 cmake-data all 3.25.1-1 [2026 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 cmake i386 3.25.1-1 [9767 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 52 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 54 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-3 [131 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 doctest-dev all 2.4.9~ds-1 [211 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 help2man i386 1.49.3 [198 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B] Get: 76 http://deb.debian.org/debian bookworm/main i386 libstb0 i386 0.0~git20220908.8b5f1f3+ds-1 [215 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libstb-dev i386 0.0~git20220908.8b5f1f3+ds-1 [595 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 pybind11-dev all 2.10.3-1 [186 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 83 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 python3-pybind11 all 2.10.3-1 [199 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Fetched 60.5 MB in 1s (52.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19599 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_i386.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:i386. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19929 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../3-libreadline8_8.2-1.3_i386.deb ... Unpacking libreadline8:i386 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_i386.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20363 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:i386. Preparing to unpack .../01-libproc2-0_2%3a4.0.2-3_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.2-3_i386.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../05-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../08-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../11-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../18-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../19-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../20-libarchive13_3.6.2-1_i386.deb ... Unpacking libarchive13:i386 (3.6.2-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../21-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../22-libsasl2-modules-db_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../23-libsasl2-2_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../24-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../25-libnghttp2-14_1.52.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.52.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../26-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../27-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../28-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../29-libcurl4_7.88.1-10_i386.deb ... Unpacking libcurl4:i386 (7.88.1-10) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../30-libjsoncpp25_1.9.5-4_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../31-librhash0_1.4.3-3_i386.deb ... Unpacking librhash0:i386 (1.4.3-3) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../32-libuv1_1.44.2-1_i386.deb ... Unpacking libuv1:i386 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../33-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../34-cmake_3.25.1-1_i386.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../35-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../36-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../37-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../38-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../39-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../40-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../41-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../42-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../43-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../47-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../48-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../49-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../50-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package doctest-dev. Preparing to unpack .../51-doctest-dev_2.4.9~ds-1_all.deb ... Unpacking doctest-dev (2.4.9~ds-1) ... Selecting previously unselected package help2man. Preparing to unpack .../52-help2man_1.49.3_i386.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../53-libblas3_3.11.0-2_i386.deb ... Unpacking libblas3:i386 (3.11.0-2) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../54-libexpat1-dev_2.5.0-1_i386.deb ... Unpacking libexpat1-dev:i386 (2.5.0-1) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../55-libgfortran5_12.2.0-14_i386.deb ... Unpacking libgfortran5:i386 (12.2.0-14) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../56-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../57-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../58-libjs-sphinxdoc_5.3.0-4_all.deb ... Unpacking libjs-sphinxdoc (5.3.0-4) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../59-liblapack3_3.11.0-2_i386.deb ... Unpacking liblapack3:i386 (3.11.0-2) ... Selecting previously unselected package libpython3.11:i386. Preparing to unpack .../60-libpython3.11_3.11.2-6_i386.deb ... Unpacking libpython3.11:i386 (3.11.2-6) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../61-zlib1g-dev_1%3a1.2.13.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11-dev:i386. Preparing to unpack .../62-libpython3.11-dev_3.11.2-6_i386.deb ... Unpacking libpython3.11-dev:i386 (3.11.2-6) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../63-libpython3-dev_3.11.2-1+b1_i386.deb ... Unpacking libpython3-dev:i386 (3.11.2-1+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/gemmi-0.5.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gemmi_0.5.7+ds-2_source.changes dpkg-buildpackage: info: source package gemmi dpkg-buildpackage: info: source version 0.5.7+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem cmake --with python3 dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem cmake --with python3 dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/gemmi-0.5.7+ds' dh_auto_configure -- -DUSE_PYTHON=1 -DINSTALL_EGG_INFO=OFF cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DUSE_PYTHON=1 -DINSTALL_EGG_INFO=OFF .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Skipping Fortran bindings. Add -D USE_FORTRAN=1 to build them. -- Compiling with C++ standard: 17 -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.13") -- Benchmarks not configured. -- The python module will be built. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") -- Found PythonLibs: /usr/lib/i386-linux-gnu/libpython3.11.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.3") -- Found pybind11 2.10.3: /usr/include;/usr/include/python3.11 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/gemmi-0.5.7+ds/obj-i686-linux-gnu make[1]: Leaving directory '/build/gemmi-0.5.7+ds' dh_auto_build -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' /usr/bin/cmake -S/build/gemmi-0.5.7+ds -B/build/gemmi-0.5.7+ds/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gemmi-0.5.7+ds/obj-i686-linux-gnu/CMakeFiles /build/gemmi-0.5.7+ds/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' make -f CMakeFiles/input.dir/build.make CMakeFiles/input.dir/depend make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-i686-linux-gnu /build/gemmi-0.5.7+ds/obj-i686-linux-gnu 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It may not work." | ^~~~~~~ /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -MF CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o.d -o CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -c /build/gemmi-0.5.7+ds/src/mapcoef.cpp [ 7%] Building CXX object CMakeFiles/py.dir/python/mol.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/mol.cpp.o -MF CMakeFiles/py.dir/python/mol.cpp.o.d -o CMakeFiles/py.dir/python/mol.cpp.o -c /build/gemmi-0.5.7+ds/python/mol.cpp [ 9%] Building CXX object CMakeFiles/py.dir/python/gemmi.cpp.o [ 12%] Building CXX object CMakeFiles/py.dir/python/align.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/gemmi.cpp.o -MF CMakeFiles/py.dir/python/gemmi.cpp.o.d -o CMakeFiles/py.dir/python/gemmi.cpp.o -c /build/gemmi-0.5.7+ds/python/gemmi.cpp [ 14%] Building CXX object CMakeFiles/py.dir/python/ccp4.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/align.cpp.o -MF CMakeFiles/py.dir/python/align.cpp.o.d -o CMakeFiles/py.dir/python/align.cpp.o -c /build/gemmi-0.5.7+ds/python/align.cpp /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/ccp4.cpp.o -MF CMakeFiles/py.dir/python/ccp4.cpp.o.d -o CMakeFiles/py.dir/python/ccp4.cpp.o -c /build/gemmi-0.5.7+ds/python/ccp4.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/python/mol.cpp:8: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. 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[-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. 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It may not work." | ^~~~~~~ [ 46%] Building CXX object CMakeFiles/py.dir/python/unitcell.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/unitcell.cpp.o -MF CMakeFiles/py.dir/python/unitcell.cpp.o.d -o CMakeFiles/py.dir/python/unitcell.cpp.o -c /build/gemmi-0.5.7+ds/python/unitcell.cpp [ 46%] Building CXX object CMakeFiles/py.dir/python/write.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/write.cpp.o -MF CMakeFiles/py.dir/python/write.cpp.o.d -o CMakeFiles/py.dir/python/write.cpp.o -c /build/gemmi-0.5.7+ds/python/write.cpp In file included from /build/gemmi-0.5.7+ds/python/write.cpp:4: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. 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It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 56%] Building CXX object CMakeFiles/program.dir/src/convert.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/convert.cpp.o -MF CMakeFiles/program.dir/src/convert.cpp.o.d -o CMakeFiles/program.dir/src/convert.cpp.o -c /build/gemmi-0.5.7+ds/src/convert.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/src/convert.cpp:16: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 56%] Building CXX object CMakeFiles/program.dir/src/fprime.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/fprime.cpp.o -MF CMakeFiles/program.dir/src/fprime.cpp.o.d -o CMakeFiles/program.dir/src/fprime.cpp.o -c /build/gemmi-0.5.7+ds/src/fprime.cpp [ 58%] Building CXX object CMakeFiles/program.dir/src/grep.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/grep.cpp.o -MF CMakeFiles/program.dir/src/grep.cpp.o.d -o CMakeFiles/program.dir/src/grep.cpp.o -c /build/gemmi-0.5.7+ds/src/grep.cpp [ 60%] Building CXX object CMakeFiles/program.dir/src/h.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/h.cpp.o -MF CMakeFiles/program.dir/src/h.cpp.o.d -o CMakeFiles/program.dir/src/h.cpp.o -c /build/gemmi-0.5.7+ds/src/h.cpp [ 63%] Building CXX object CMakeFiles/program.dir/src/json2cif.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/json2cif.cpp.o -MF CMakeFiles/program.dir/src/json2cif.cpp.o.d -o CMakeFiles/program.dir/src/json2cif.cpp.o -c /build/gemmi-0.5.7+ds/src/json2cif.cpp [ 63%] Building CXX object CMakeFiles/program.dir/src/main.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/main.cpp.o -MF CMakeFiles/program.dir/src/main.cpp.o.d -o CMakeFiles/program.dir/src/main.cpp.o -c /build/gemmi-0.5.7+ds/src/main.cpp [ 65%] Building CXX object CMakeFiles/program.dir/src/map.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/map.cpp.o -MF CMakeFiles/program.dir/src/map.cpp.o.d -o CMakeFiles/program.dir/src/map.cpp.o -c /build/gemmi-0.5.7+ds/src/map.cpp [ 68%] Building CXX object CMakeFiles/program.dir/src/map2sf.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/map2sf.cpp.o -MF CMakeFiles/program.dir/src/map2sf.cpp.o.d -o CMakeFiles/program.dir/src/map2sf.cpp.o -c /build/gemmi-0.5.7+ds/src/map2sf.cpp [ 68%] Building CXX object CMakeFiles/program.dir/src/mask.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mask.cpp.o -MF CMakeFiles/program.dir/src/mask.cpp.o.d -o CMakeFiles/program.dir/src/mask.cpp.o -c /build/gemmi-0.5.7+ds/src/mask.cpp [ 70%] Building CXX object CMakeFiles/program.dir/src/merge.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/merge.cpp.o -MF CMakeFiles/program.dir/src/merge.cpp.o.d -o CMakeFiles/program.dir/src/merge.cpp.o -c /build/gemmi-0.5.7+ds/src/merge.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/mtz2cif.hpp:24, from /build/gemmi-0.5.7+ds/src/merge.cpp:14: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 73%] Linking CXX shared module gemmi.cpython-311-i386-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/py.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -flto -Wl,-z,relro -shared -o gemmi.cpython-311-i386-linux-gnu.so CMakeFiles/py.dir/python/mol.cpp.o CMakeFiles/py.dir/python/gemmi.cpp.o CMakeFiles/py.dir/python/align.cpp.o CMakeFiles/py.dir/python/ccp4.cpp.o CMakeFiles/py.dir/python/chemcomp.cpp.o CMakeFiles/py.dir/python/cif.cpp.o CMakeFiles/py.dir/python/custom.cpp.o CMakeFiles/py.dir/python/elem.cpp.o CMakeFiles/py.dir/python/grid.cpp.o CMakeFiles/py.dir/python/hkl.cpp.o CMakeFiles/py.dir/python/meta.cpp.o CMakeFiles/py.dir/python/monlib.cpp.o CMakeFiles/py.dir/python/mtz.cpp.o CMakeFiles/py.dir/python/read.cpp.o CMakeFiles/py.dir/python/recgrid.cpp.o CMakeFiles/py.dir/python/scaling.cpp.o CMakeFiles/py.dir/python/search.cpp.o CMakeFiles/py.dir/python/sf.cpp.o CMakeFiles/py.dir/python/sym.cpp.o CMakeFiles/py.dir/python/topo.cpp.o CMakeFiles/py.dir/python/unitcell.cpp.o CMakeFiles/py.dir/python/write.cpp.o /usr/lib/i386-linux-gnu/libz.so [ 75%] Building CXX object CMakeFiles/program.dir/src/mondiff.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mondiff.cpp.o -MF CMakeFiles/program.dir/src/mondiff.cpp.o.d -o CMakeFiles/program.dir/src/mondiff.cpp.o -c /build/gemmi-0.5.7+ds/src/mondiff.cpp [ 78%] Building CXX object CMakeFiles/program.dir/src/mtz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -Wno-psabi -MD -MT CMakeFiles/program.dir/src/mtz.cpp.o -MF CMakeFiles/program.dir/src/mtz.cpp.o.d -o CMakeFiles/program.dir/src/mtz.cpp.o -c /build/gemmi-0.5.7+ds/src/mtz.cpp [ 78%] Building CXX object CMakeFiles/program.dir/src/mtz2cif.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mtz2cif.cpp.o -MF CMakeFiles/program.dir/src/mtz2cif.cpp.o.d -o CMakeFiles/program.dir/src/mtz2cif.cpp.o -c /build/gemmi-0.5.7+ds/src/mtz2cif.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/mtz2cif.hpp:24, from /build/gemmi-0.5.7+ds/src/mtz2cif.cpp:8: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 80%] Building CXX object CMakeFiles/program.dir/src/prep.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/prep.cpp.o -MF CMakeFiles/program.dir/src/prep.cpp.o.d -o CMakeFiles/program.dir/src/prep.cpp.o -c /build/gemmi-0.5.7+ds/src/prep.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/crd.hpp:13, from /build/gemmi-0.5.7+ds/src/prep.cpp:7: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 82%] Building CXX object CMakeFiles/program.dir/src/reindex.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/reindex.cpp.o -MF CMakeFiles/program.dir/src/reindex.cpp.o.d -o CMakeFiles/program.dir/src/reindex.cpp.o -c /build/gemmi-0.5.7+ds/src/reindex.cpp [ 82%] Building CXX object CMakeFiles/program.dir/src/residues.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/residues.cpp.o -MF CMakeFiles/program.dir/src/residues.cpp.o.d -o CMakeFiles/program.dir/src/residues.cpp.o -c /build/gemmi-0.5.7+ds/src/residues.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/src/residues.cpp:5: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ lto-wrapper: warning: using serial compilation of 112 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information [ 85%] Building CXX object CMakeFiles/program.dir/src/rmsz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/rmsz.cpp.o -MF CMakeFiles/program.dir/src/rmsz.cpp.o.d -o CMakeFiles/program.dir/src/rmsz.cpp.o -c /build/gemmi-0.5.7+ds/src/rmsz.cpp [ 87%] Building CXX object CMakeFiles/program.dir/src/sf2map.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/sf2map.cpp.o -MF CMakeFiles/program.dir/src/sf2map.cpp.o.d -o CMakeFiles/program.dir/src/sf2map.cpp.o -c /build/gemmi-0.5.7+ds/src/sf2map.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/src/sf2map.cpp:8: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. 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Passed 0.00 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.01 sec make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' [100%] Built target check make[4]: Leaving directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/gemmi-0.5.7+ds/obj-i686-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' make[2]: Leaving directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' PYTHONPATH=$(find . -name 'obj-*') pytest-3 -k 'not test_sfcalc_' ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/gemmi-0.5.7+ds collected 173 items / 2 deselected / 171 selected tests/test_align.py ... [ 1%] tests/test_cif.py ..................... [ 14%] tests/test_cif_json.py ..... [ 16%] tests/test_elem.py ..... [ 19%] tests/test_examples.py ............ [ 26%] tests/test_grid.py ...... [ 30%] tests/test_hkl.py ....... [ 34%] tests/test_misc.py .. [ 35%] tests/test_mol.py ........................................... [ 60%] tests/test_monlib.py ........ [ 65%] tests/test_neighbor.py ..... [ 68%] tests/test_prog.py sssssssss [ 73%] tests/test_sf.py . [ 74%] tests/test_smallmol.py .... [ 76%] tests/test_symmetry.py ...................... [ 89%] tests/test_twin.py .... [ 91%] tests/test_unitcell.py .............. [100%] ================= 162 passed, 9 skipped, 2 deselected in 1.98s ================= make[1]: Leaving directory '/build/gemmi-0.5.7+ds' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j8 install DESTDIR=/build/gemmi-0.5.7\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' /usr/bin/cmake -S/build/gemmi-0.5.7+ds -B/build/gemmi-0.5.7+ds/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/bin/gemmi -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/floodfill.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/cif2mtz.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/read_coor.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/solmask.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/eig3.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/reindex.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/metadata.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/fstream.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/gz.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/crd.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/grid.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/binner.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/chemcomp_xyz.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/reciproc.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/chemcomp.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/to_pdb.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/it92.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/read_cif.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/cifdoc.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/input.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/dirwalk.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/fourier.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/elem.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/recgrid.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/monlib.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/seqid.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/qcp.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/calculate.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/scaling.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/assembly.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/read_map.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/mtz.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/levmar.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/neutron92.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/utf.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/addends.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/atof.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/formfact.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/select.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/small.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/fprime.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/placeh.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/fileutil.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/mmread.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/numb.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/linkhunt.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/merge.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/unitcell.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/c4322.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/math.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/to_mmdb.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/xds_ascii.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/bessel.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/twin.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/symmetry.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/to_cif.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/sfcalc.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/remarks.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/modify.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/to_json.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/seqalign.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/sprintf.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/fail.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/asudata.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/pirfasta.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/model.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/cif.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/align.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/to_mmcif.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/mmcif_impl.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/contact.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/neighbor.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/ccp4.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/smcif.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/enumstr.hpp -- 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Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/dencalc.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/pdb.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/asumask.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/iterator.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/to_chemcomp.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/third_party -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/third_party/fast_float.h -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/third_party/sajson.h -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/third_party/pocketfft_hdronly.h -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/third_party/tinydir.h -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/include/gemmi/atox.hpp -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi.cpython-311-i386-linux-gnu.so -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/rama_plot.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/weight.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/maskdiff.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/cif_i_sigi.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/maskcheck.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/ccd_subgraph.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/mtrix_iso.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/long_geom.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/rama_gather.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/simple_search.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/mtz_i_sigi.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/ccd_gi.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/col_order.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/from_json.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/hello.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/aafreq.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/matthews.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__init__.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__main__.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/sub_ccd.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/multiproc.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/patterson_slice.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/map2mtz.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__pycache__ -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/merge_mtz_mmcif.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/monomers.py make[1]: Leaving directory '/build/gemmi-0.5.7+ds/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_installman make[1]: Entering directory '/build/gemmi-0.5.7+ds' help2man 'tail -n +9 docs/gemmi-help.txt' \ --version-string 0.5.7+ds --name 'CLI for GEMMI library' \ --no-info --help-option '' > debian/gemmi.1 sed -i 's/.TH GEMMI-HELP.TXT/.TH gemmi/' debian/gemmi.1 sed -i 's/gemmi-help.txt/gemmi/' debian/gemmi.1 dh_installman make[1]: Leaving directory '/build/gemmi-0.5.7+ds' dh_python3 -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dwz: debian/python3-gemmi/usr/lib/python3/dist-packages/gemmi.cpython-311-i386-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Provides field of package python3-gemmi: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'python3-gemmi' in '../python3-gemmi_0.5.7+ds-2_i386.deb'. dpkg-deb: building package 'gemmi-dbgsym' in '../gemmi-dbgsym_0.5.7+ds-2_i386.deb'. dpkg-deb: building package 'gemmi-dev' in '../gemmi-dev_0.5.7+ds-2_i386.deb'. dpkg-deb: building package 'gemmi' in '../gemmi_0.5.7+ds-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../gemmi_0.5.7+ds-2_i386.buildinfo dpkg-genchanges --build=binary -O../gemmi_0.5.7+ds-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9264 and its subdirectories I: Current time: Fri Jun 2 10:19:51 -12 2023 I: pbuilder-time-stamp: 1685744391 Fri Jun 2 22:19:53 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Fri Jun 2 22:19:53 UTC 2023 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Fri Jun 2 22:27:10 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. Fri Jun 2 22:27:10 UTC 2023 I: gemmi_0.5.7+ds-2_i386.changes: Format: 1.8 Date: Tue, 04 Oct 2022 03:51:36 -0400 Source: gemmi Binary: gemmi gemmi-dbgsym gemmi-dev python3-gemmi Architecture: i386 Version: 0.5.7+ds-2 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: gemmi - library for structural biology - executable gemmi-dev - library for structural biology python3-gemmi - library for structural biology - Python module Changes: gemmi (0.5.7+ds-2) unstable; urgency=medium . * Not running test_sfcalc4 autopkgtest: fails on i386 due to precision. * Update standards version to 4.6.1, no changes needed. Checksums-Sha1: 2a0bdd3a362d7543414827a04c1e309f6c0745ce 26637152 gemmi-dbgsym_0.5.7+ds-2_i386.deb a9e9bc3691cccfad6991d207c175c1f6fe458fa1 403620 gemmi-dev_0.5.7+ds-2_i386.deb 431166866011976a2b735f74e50966eda0406aa8 7718 gemmi_0.5.7+ds-2_i386.buildinfo 0a666aeb04011129227159ea5ce391e6ec50a38e 1181008 gemmi_0.5.7+ds-2_i386.deb 1d2788b4af38d12606d7bc1e8a99c555bb287e3a 1798644 python3-gemmi_0.5.7+ds-2_i386.deb Checksums-Sha256: 05d120071a2d198699f7e1ed22e1ba65b9716126315291644c2ab5ae4abf708f 26637152 gemmi-dbgsym_0.5.7+ds-2_i386.deb 67fda01a8c1938444dd0e003bb8172305aff11c2e5fd42eb7f6dbaac083f097c 403620 gemmi-dev_0.5.7+ds-2_i386.deb a445f9f46567f38d4085e44925325e9f53f63970307ba3f5bdee0f2ae85357eb 7718 gemmi_0.5.7+ds-2_i386.buildinfo cc4de90e5ee4362b83183804814f1d8927cd92c01e0e6542592fb49fa35fd596 1181008 gemmi_0.5.7+ds-2_i386.deb 7a668e8b176a1bb49c0384bbcc95dde287baf694a5781302f94a77354f8d78cd 1798644 python3-gemmi_0.5.7+ds-2_i386.deb Files: 0d398fccd8fe2da1bec5f763a273ce4e 26637152 debug optional gemmi-dbgsym_0.5.7+ds-2_i386.deb b3786c432eb6481d6942c023bd8f8e1e 403620 libdevel optional gemmi-dev_0.5.7+ds-2_i386.deb 430da9a2f7bfa12f31238be1bdb42088 7718 science optional gemmi_0.5.7+ds-2_i386.buildinfo f7c40cfe859a163643eaac183f3fc297 1181008 science optional gemmi_0.5.7+ds-2_i386.deb f50dd452372e749b36b1a6ff25a6d6d5 1798644 python optional python3-gemmi_0.5.7+ds-2_i386.deb Fri Jun 2 22:27:11 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.40UQ7W41/gemmi_0.5.7+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.40UQ7W41/gemmi_0.5.7+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.40UQ7W41/gemmi_0.5.7+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.40UQ7W41/b1/gemmi_0.5.7+ds-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.40UQ7W41/b2/gemmi_0.5.7+ds-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.651s) 0.651s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.340s) 0.339s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Jun 2 22:27:12 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 2 22:27:12 UTC 2023 I: gemmi from bookworm built successfully and reproducibly on i386. Fri Jun 2 22:27:13 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Jun 2 22:27:13 UTC 2023 I: Submitting 12K b1/gemmi_0.5.7+ds-2_i386.buildinfo.asc Fri Jun 2 22:27:15 UTC 2023 I: Submitting 12K b2/gemmi_0.5.7+ds-2_i386.buildinfo.asc Fri Jun 2 22:27:16 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 2 22:27:16 UTC 2023 I: Done submitting .buildinfo files. Fri Jun 2 22:27:16 UTC 2023 I: Removing signed gemmi_0.5.7+ds-2_i386.buildinfo.asc files: removed './b1/gemmi_0.5.7+ds-2_i386.buildinfo.asc' removed './b2/gemmi_0.5.7+ds-2_i386.buildinfo.asc'