Mon Apr 17 10:55:51 UTC 2023 I: starting to build dssp/bookworm/i386 on jenkins on '2023-04-17 10:55' Mon Apr 17 10:55:51 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/6580/console.log Mon Apr 17 10:55:51 UTC 2023 I: Downloading source for bookworm/dssp=4.2.2-2 --2023-04-17 10:55:51-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dssp/dssp_4.2.2-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2067 (2.0K) [text/prs.lines.tag] Saving to: ‘dssp_4.2.2-2.dsc’ 0K .. 100% 210K=0.01s 2023-04-17 10:55:51 (210 KB/s) - ‘dssp_4.2.2-2.dsc’ saved [2067/2067] Mon Apr 17 10:55:51 UTC 2023 I: dssp_4.2.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dssp Binary: dssp Architecture: any Version: 4.2.2-2 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman Homepage: https://github.com/PDB-REDO/dssp Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/dssp Vcs-Git: https://salsa.debian.org/med-team/dssp.git Testsuite: autopkgtest Testsuite-Triggers: libcifpp-dev Build-Depends: debhelper-compat (= 13), cmake, mrc, libcifpp-dev (>= 5.0.7.1-1~), libboost-dev, libboost-regex-dev, zlib1g-dev, libmcfp-dev Package-List: dssp deb science optional arch=any Checksums-Sha1: e3d86c8b5ebaa919b6b0e4525ba7ca4651ff9b6e 144356 dssp_4.2.2.orig.tar.gz 742234db088d7c37748bd13c69e23854e3461c39 4448 dssp_4.2.2-2.debian.tar.xz Checksums-Sha256: 59e2810f0c4a484d9b767448a045fce2bd48ad05f410d9e286d9dd3e9b82b823 144356 dssp_4.2.2.orig.tar.gz 499d099ceabd2d1c6bded0c59a3714b1978b9a9f166f78e756f223bdb1feefc0 4448 dssp_4.2.2-2.debian.tar.xz Files: 53df26e846064b6bd80bfc9d1c17bf6d 144356 dssp_4.2.2.orig.tar.gz 88141c14de1b30a94eb4c50ab66993f1 4448 dssp_4.2.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEpytoJCJrtAfiS56AWHUD7Hrn7c4FAmPblcMWHG1hYXJ0ZW5A aGVra2VsbWFuLmNvbQAKCRBYdQPseuftzm0DD/9DjrqtqdWaeDldHcho4Fu4ptap qEjcGk71n3RNeZYYaHYdNDs5TAPT1lXa3DGaTJU/DSnGDyBPMX0uiyQo73lxmO30 UwgASPkQJ00GpLucbOZBm02yxUZAWxpuG2DyUFwFnd81aECf3PbLVoZmb1XJDNan 6SDxvkkb/RvLDJ/TG4R9nWWhA1bTetGYpADNWqvdMis55Wu8lyAMovjEH4nVtm9c Vm9X+rE1+xfS1495LWzp2pqiXKGMDvvSq27xSAfqUC13JA66jil/ApVvIRUzUUcg rFtXCVZIoXx+4+32xF8kfm8642+1mp6SM3oBNbUIbKkzwOHWDl6AZMVGlFllzDNi Lyar/EI9aFN0wLR+LZIiNim2lYXHo4XGd9orz7V6BXcp2hCHC9//C3TWvAqJeiqh MlUSHfzaHuJUHw/vvXfjuHCEwbyduk7mKzzzNK+xrynsYvC3Wsu7IFno4HWwX46C 6RDaT7WiEGfjtQzJrDpZPipiyolJXkwmcsTdvPapkVDAM6eyDty3kKy6hEAcFeez 2dVjXLJR2DkKF8xMtRxGDT+BiW5WTdvs4BPSu+m2xy/mvruK1x90BKy5gXIJKOqh pSahGtTpAFZxaVCSUWOntKypweuvDKEUg1nTuFHWxWVVvmvJa6YZ2XVghDq31NYs zLY2euUbZtQ8u/ob0w== =GxVh -----END PGP SIGNATURE----- Mon Apr 17 10:55:51 UTC 2023 I: Checking whether the package is not for us Mon Apr 17 10:55:51 UTC 2023 I: Starting 1st build on remote node ionos6-i386.debian.net. Mon Apr 17 10:55:51 UTC 2023 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Mon Apr 17 10:56:51 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun May 19 05:18:53 -12 2024 I: pbuilder-time-stamp: 1716139133 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [dssp_4.2.2-2.dsc] I: copying [./dssp_4.2.2.orig.tar.gz] I: copying [./dssp_4.2.2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 1 22:51:47 2023 -12 gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE gpgv: issuer "maarten@hekkelman.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dssp_4.2.2-2.dsc: no acceptable signature found dpkg-source: info: extracting dssp in dssp-4.2.2 dpkg-source: info: unpacking dssp_4.2.2.orig.tar.gz dpkg-source: info: unpacking dssp_4.2.2-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/101875/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='96cdd80281dc4bf0855bf10e4c04cfcb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='101875' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kJbzvU9m/pbuilderrc_yn6z --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kJbzvU9m/b1 --logfile b1/build.log dssp_4.2.2-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/101875/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, mrc, libcifpp-dev (>= 5.0.7.1-1~), libboost-dev, libboost-regex-dev, zlib1g-dev, libmcfp-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on mrc; however: Package mrc is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev (>= 5.0.7.1-1~); however: Package libcifpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libmcfp-dev; however: Package libmcfp-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libboost-dev{a} libboost-regex-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libcifpp-data{a} libcifpp-dev{a} libcifpp5{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libmcfp-dev{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} mrc{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 57.6 MB of archives. After unpacking 336 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libarchive13 i386 3.6.2-1 [385 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-8 [419 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libjsoncpp25 i386 1.9.5-4 [86.2 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 librhash0 i386 1.4.3-3 [149 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libuv1 i386 1.44.2-1 [147 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 cmake i386 3.25.1-1 [9767 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 52 http://deb.debian.org/debian bookworm/main i386 libboost-regex1.74.0 i386 1.74.0+ds1-20 [509 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libboost-regex1.74-dev i386 1.74.0+ds1-20 [585 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libboost-regex-dev i386 1.74.0.3 [4596 B] Get: 56 http://deb.debian.org/debian bookworm/main i386 libcifpp-data all 5.0.7.1-1 [452 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libcifpp5 i386 5.0.7.1-1 [856 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libcifpp-dev i386 5.0.7.1-1 [86.1 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libmcfp-dev i386 1.2.3-1 [15.9 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 mrc i386 1.3.6-1 [49.2 kB] Fetched 57.6 MB in 1s (81.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_i386.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... 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Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... 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Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../22-libsasl2-2_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../23-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../24-libnghttp2-14_1.52.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.52.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../25-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../27-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../28-libcurl4_7.88.1-8_i386.deb ... Unpacking libcurl4:i386 (7.88.1-8) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../29-libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../30-libjsoncpp25_1.9.5-4_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../31-librhash0_1.4.3-3_i386.deb ... Unpacking librhash0:i386 (1.4.3-3) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../32-libuv1_1.44.2-1_i386.deb ... Unpacking libuv1:i386 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../33-cmake-data_3.25.1-1_all.deb ... 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Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../40-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../41-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../42-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../43-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... 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Selecting previously unselected package libicu-dev:i386. Preparing to unpack .../52-libicu-dev_72.1-3_i386.deb ... Unpacking libicu-dev:i386 (72.1-3) ... Selecting previously unselected package libboost-regex1.74-dev:i386. Preparing to unpack .../53-libboost-regex1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost-regex1.74-dev:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-regex-dev:i386. Preparing to unpack .../54-libboost-regex-dev_1.74.0.3_i386.deb ... Unpacking libboost-regex-dev:i386 (1.74.0.3) ... Selecting previously unselected package libcifpp-data. Preparing to unpack .../55-libcifpp-data_5.0.7.1-1_all.deb ... Unpacking libcifpp-data (5.0.7.1-1) ... Selecting previously unselected package libcifpp5:i386. Preparing to unpack .../56-libcifpp5_5.0.7.1-1_i386.deb ... Unpacking libcifpp5:i386 (5.0.7.1-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../57-zlib1g-dev_1%3a1.2.13.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libcifpp-dev:i386. Preparing to unpack .../58-libcifpp-dev_5.0.7.1-1_i386.deb ... Unpacking libcifpp-dev:i386 (5.0.7.1-1) ... Selecting previously unselected package libmcfp-dev. Preparing to unpack .../59-libmcfp-dev_1.2.3-1_i386.deb ... Unpacking libmcfp-dev (1.2.3-1) ... Selecting previously unselected package mrc. Preparing to unpack .../60-mrc_1.3.6-1_i386.deb ... Unpacking mrc (1.3.6-1) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libboost1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libicu72:i386 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libuv1:i386 (1.44.2-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up mrc (1.3.6-1) ... Setting up libboost-regex1.74.0:i386 (1.74.0+ds1-20) ... Setting up libproc2-0:i386 (2:4.0.2-3) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:i386 (1.9.5-4) ... Setting up icu-devtools (72.1-3) ... Setting up libcifpp-data (5.0.7.1-1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:i386 (1.4.3-3) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libmcfp-dev (1.2.3-1) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libboost-dev:i386 (1.74.0.3) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libicu-dev:i386 (72.1-3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:i386 (3.6.2-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libcifpp5:i386 (5.0.7.1-1) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libboost-regex1.74-dev:i386 (1.74.0+ds1-20) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:i386 (7.88.1-8) ... Setting up libboost-regex-dev:i386 (1.74.0.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcifpp-dev:i386 (5.0.7.1-1) ... Setting up cmake (3.25.1-1) ... Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dssp-4.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dssp_4.2.2-2_source.changes dpkg-buildpackage: info: source package dssp dpkg-buildpackage: info: source version 4.2.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The CXX compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for C++ include filesystem -- Looking for C++ include filesystem - found -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED - Success -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.13") -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: regex Using resources compiled with -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/dssp-4.2.2/obj-i686-linux-gnu dh_auto_build cd obj-i686-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/dssp-4.2.2/obj-i686-linux-gnu' /usr/bin/cmake -S/build/dssp-4.2.2 -B/build/dssp-4.2.2/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dssp-4.2.2/obj-i686-linux-gnu/CMakeFiles /build/dssp-4.2.2/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/dssp-4.2.2/obj-i686-linux-gnu' make -f CMakeFiles/dssp.dir/build.make CMakeFiles/dssp.dir/depend make[3]: Entering directory '/build/dssp-4.2.2/obj-i686-linux-gnu' cd /build/dssp-4.2.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dssp-4.2.2 /build/dssp-4.2.2 /build/dssp-4.2.2/obj-i686-linux-gnu /build/dssp-4.2.2/obj-i686-linux-gnu /build/dssp-4.2.2/obj-i686-linux-gnu/CMakeFiles/dssp.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/dssp-4.2.2/obj-i686-linux-gnu' make -f CMakeFiles/dssp.dir/build.make CMakeFiles/dssp.dir/build make[3]: Entering directory '/build/dssp-4.2.2/obj-i686-linux-gnu' [ 16%] Building CXX object CMakeFiles/dssp.dir/src/dssp.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/dssp-4.2.2/include -g -O2 -ffile-prefix-map=/build/dssp-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/dssp.dir/src/dssp.cpp.o -MF CMakeFiles/dssp.dir/src/dssp.cpp.o.d -o CMakeFiles/dssp.dir/src/dssp.cpp.o -c /build/dssp-4.2.2/src/dssp.cpp [ 33%] Linking CXX static library libdssp.a /usr/bin/cmake -P CMakeFiles/dssp.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/dssp.dir/link.txt --verbose=1 /usr/bin/ar qc libdssp.a CMakeFiles/dssp.dir/src/dssp.cpp.o /usr/bin/ranlib libdssp.a make[3]: Leaving directory '/build/dssp-4.2.2/obj-i686-linux-gnu' [ 33%] Built target dssp make -f CMakeFiles/mkdssp.dir/build.make CMakeFiles/mkdssp.dir/depend make[3]: Entering directory '/build/dssp-4.2.2/obj-i686-linux-gnu' [ 50%] Generating mkdssp_rsrc.obj, ALL /usr/bin/mrc -o /build/dssp-4.2.2/obj-i686-linux-gnu/mkdssp_rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic cd /build/dssp-4.2.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dssp-4.2.2 /build/dssp-4.2.2 /build/dssp-4.2.2/obj-i686-linux-gnu /build/dssp-4.2.2/obj-i686-linux-gnu /build/dssp-4.2.2/obj-i686-linux-gnu/CMakeFiles/mkdssp.dir/DependInfo.cmake --color= Deleting primary custom command output "/build/dssp-4.2.2/obj-i686-linux-gnu/mkdssp_rsrc.obj" because another output "/build/dssp-4.2.2/obj-i686-linux-gnu/ALL" does not exist. make[3]: Leaving directory '/build/dssp-4.2.2/obj-i686-linux-gnu' make -f CMakeFiles/mkdssp.dir/build.make CMakeFiles/mkdssp.dir/build make[3]: Entering directory '/build/dssp-4.2.2/obj-i686-linux-gnu' [ 66%] Building CXX object CMakeFiles/mkdssp.dir/src/dssp-io.cpp.o [ 83%] Building CXX object CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/dssp-4.2.2/obj-i686-linux-gnu -I/build/dssp-4.2.2/include -g -O2 -ffile-prefix-map=/build/dssp-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/mkdssp.dir/src/dssp-io.cpp.o -MF CMakeFiles/mkdssp.dir/src/dssp-io.cpp.o.d -o CMakeFiles/mkdssp.dir/src/dssp-io.cpp.o -c /build/dssp-4.2.2/src/dssp-io.cpp /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/dssp-4.2.2/obj-i686-linux-gnu -I/build/dssp-4.2.2/include -g -O2 -ffile-prefix-map=/build/dssp-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o -MF CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o.d -o CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o -c /build/dssp-4.2.2/src/mkdssp.cpp [ 83%] Generating mkdssp_rsrc.obj, ALL /usr/bin/mrc -o /build/dssp-4.2.2/obj-i686-linux-gnu/mkdssp_rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic [100%] Linking CXX executable mkdssp /usr/bin/cmake -E cmake_link_script CMakeFiles/mkdssp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/dssp-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro "CMakeFiles/mkdssp.dir/src/dssp-io.cpp.o" CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o mkdssp_rsrc.obj -o mkdssp libdssp.a libdssp.a /usr/lib/i386-linux-gnu/libcifpp.so.5.0.7.1 /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libboost_regex.so.1.74.0 /usr/bin/ld: warning: mkdssp_rsrc.obj: missing .note.GNU-stack section implies executable stack /usr/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker make[3]: Leaving directory '/build/dssp-4.2.2/obj-i686-linux-gnu' [100%] Built target mkdssp make[2]: Leaving directory '/build/dssp-4.2.2/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/dssp-4.2.2/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/dssp-4.2.2/obj-i686-linux-gnu' dh_auto_test cd obj-i686-linux-gnu && make -j16 test ARGS\+=--verbose ARGS\+=-j16 make[1]: Entering directory '/build/dssp-4.2.2/obj-i686-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j16 UpdateCTestConfiguration from :/build/dssp-4.2.2/obj-i686-linux-gnu/DartConfiguration.tcl Parse Config file:/build/dssp-4.2.2/obj-i686-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/dssp-4.2.2/obj-i686-linux-gnu/DartConfiguration.tcl Parse Config file:/build/dssp-4.2.2/obj-i686-linux-gnu/DartConfiguration.tcl Test project /build/dssp-4.2.2/obj-i686-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! make[1]: Leaving directory '/build/dssp-4.2.2/obj-i686-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dssp/ cd obj-i686-linux-gnu && make -j16 install DESTDIR=/build/dssp-4.2.2/debian/dssp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dssp-4.2.2/obj-i686-linux-gnu' /usr/bin/cmake -S/build/dssp-4.2.2 -B/build/dssp-4.2.2/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/dssp-4.2.2/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/dssp-4.2.2/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/dssp-4.2.2/debian/dssp/usr/lib/i386-linux-gnu/libdssp.a -- Installing: /build/dssp-4.2.2/debian/dssp/usr/lib/i386-linux-gnu/cmake/dssp/dsspTargets.cmake -- Installing: /build/dssp-4.2.2/debian/dssp/usr/lib/i386-linux-gnu/cmake/dssp/dsspTargets-none.cmake -- Installing: /build/dssp-4.2.2/debian/dssp/usr/include/dssp.hpp -- Installing: /build/dssp-4.2.2/debian/dssp/usr/lib/i386-linux-gnu/cmake/dssp/dsspConfig.cmake -- Installing: /build/dssp-4.2.2/debian/dssp/usr/lib/i386-linux-gnu/cmake/dssp/dsspConfigVersion.cmake -- Installing: /build/dssp-4.2.2/debian/dssp/usr/lib/i386-linux-gnu/pkgconfig/libdssp.pc -- Installing: /build/dssp-4.2.2/debian/dssp/usr/bin/mkdssp -- Installing: /build/dssp-4.2.2/debian/dssp/usr/share/man/man1/mkdssp.1 make[1]: Leaving directory '/build/dssp-4.2.2/obj-i686-linux-gnu' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dssp' in '../dssp_4.2.2-2_i386.deb'. dpkg-deb: building package 'dssp-dbgsym' in '../dssp-dbgsym_4.2.2-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../dssp_4.2.2-2_i386.buildinfo dpkg-genchanges --build=binary -O../dssp_4.2.2-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/101875 and its subdirectories I: Current time: Sun May 19 05:19:50 -12 2024 I: pbuilder-time-stamp: 1716139190 Mon Apr 17 10:56:51 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Mon Apr 17 10:56:51 UTC 2023 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Mon Apr 17 10:58:25 UTC 2023 I: Deleting $TMPDIR on ionos12-i386.debian.net. Mon Apr 17 10:58:25 UTC 2023 I: dssp_4.2.2-2_i386.changes: Format: 1.8 Date: Thu, 02 Feb 2023 11:48:45 +0100 Source: dssp Binary: dssp dssp-dbgsym Architecture: i386 Version: 4.2.2-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Maarten L. Hekkelman Description: dssp - protein secondary structure assignment based on 3D structure Changes: dssp (4.2.2-2) unstable; urgency=medium . * Fix dependency. Checksums-Sha1: ea9e1f54db7ae376e1c89e1895e747d1664c66ab 2849520 dssp-dbgsym_4.2.2-2_i386.deb 968d4ac21c6bb13d5f72908ff0edc0c8179b7689 6148 dssp_4.2.2-2_i386.buildinfo 1ef3027ef314a607c708e4b7ee96004393191c4c 636720 dssp_4.2.2-2_i386.deb Checksums-Sha256: b345636ccd11e2d039cff6e21ad8eae82636f4bc881a4ddf6bdf9a1f5578b794 2849520 dssp-dbgsym_4.2.2-2_i386.deb 0c4c5ad451a913891a5918d81d1a1bfd5c15d24fea39d96eaf6aa3db45a09545 6148 dssp_4.2.2-2_i386.buildinfo f7b2a7424d9cd126905e7de3b5ba3ca88a9ff78160b2a134a56d98b255e22464 636720 dssp_4.2.2-2_i386.deb Files: e9d2d284e425b72a3499a1a6b33bff3b 2849520 debug optional dssp-dbgsym_4.2.2-2_i386.deb 68c87179f6ca429891478f6962b81c99 6148 science optional dssp_4.2.2-2_i386.buildinfo cb105cfb0ca4de592f4b7f548784cc44 636720 science optional dssp_4.2.2-2_i386.deb Mon Apr 17 10:58:27 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.kJbzvU9m/dssp_4.2.2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.kJbzvU9m/dssp_4.2.2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.kJbzvU9m/dssp_4.2.2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.kJbzvU9m/b1/dssp_4.2.2-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.kJbzvU9m/b2/dssp_4.2.2-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.365s) 0.365s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.055s) 0.055s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon Apr 17 10:58:28 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 17 10:58:28 UTC 2023 I: dssp from bookworm built successfully and reproducibly on i386. Mon Apr 17 10:58:30 UTC 2023 I: Submitting .buildinfo files to external archives: Mon Apr 17 10:58:30 UTC 2023 I: Submitting 8.0K b1/dssp_4.2.2-2_i386.buildinfo.asc Mon Apr 17 10:58:31 UTC 2023 I: Submitting 8.0K b2/dssp_4.2.2-2_i386.buildinfo.asc Mon Apr 17 10:58:32 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 17 10:58:32 UTC 2023 I: Done submitting .buildinfo files. Mon Apr 17 10:58:32 UTC 2023 I: Removing signed dssp_4.2.2-2_i386.buildinfo.asc files: removed './b1/dssp_4.2.2-2_i386.buildinfo.asc' removed './b2/dssp_4.2.2-2_i386.buildinfo.asc'