Sat Apr 29 04:07:55 UTC 2023 I: starting to build delly/bookworm/i386 on jenkins on '2023-04-29 04:07' Sat Apr 29 04:07:55 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/12828/console.log Sat Apr 29 04:07:55 UTC 2023 I: Downloading source for bookworm/delly=1.1.6-1 --2023-04-29 04:07:55-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/delly/delly_1.1.6-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2114 (2.1K) [text/prs.lines.tag] Saving to: ‘delly_1.1.6-1.dsc’ 0K .. 100% 7.14M=0s 2023-04-29 04:07:55 (7.14 MB/s) - ‘delly_1.1.6-1.dsc’ saved [2114/2114] Sat Apr 29 04:07:56 UTC 2023 I: delly_1.1.6-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: delly Binary: delly Architecture: any Version: 1.1.6-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/dellytools/delly Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/delly Vcs-Git: https://salsa.debian.org/med-team/delly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper Package-List: delly deb science optional arch=any Checksums-Sha1: fa20b856cf6fdc6623fdfdba85c018410a672d44 3728564 delly_1.1.6.orig.tar.xz 65899b7e71df4b07ec6cb0fd1363903bcf8a92ad 5200 delly_1.1.6-1.debian.tar.xz Checksums-Sha256: 965e959c8647fd153b33f56efe8882c0c8c40bfc2731ff586112ecb05e72becb 3728564 delly_1.1.6.orig.tar.xz fa990ae62dfaa3dfaff713507947070e20cafe5d4007e42f0ccfd0b37f4db4b9 5200 delly_1.1.6-1.debian.tar.xz Files: f2229542496eff1093a36774c7b3ff95 3728564 delly_1.1.6.orig.tar.xz 22ea051d202cb18e87f2baeb49f1e5b6 5200 delly_1.1.6-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmNyRNYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFzPA//aTouZcHib2liv9eOx16sUfxL+mZAbxzB L/GNQ+GZh/MuC0JtyHqt182n7WZvos9XlKNolFhllM3Og+ojRCQe25oIkLkhGTZe wWmFSSutzmXDFAA3m0+jbNm/KyI3lKLjsTOmZ4QNStakUG6axukO/4hNhBkO0NjH Udj9EPHd5H4H5Qbt4Bo6Z8+azWmx4Vs6CDV3pNoSt34km2EiSCRNEBUpdF2xX0D4 pZ2DJJF8+C0cE7aHPMkf35cOVJdxTvHBhIEnI9kB7OqtW1UuXXP5J+EKWa72mm3I 99K2ZTp4axx5igbmehsOfVOY7UUSlCe6AEnKPeJueCxvpe9Zs4HGAAAezwztKBA5 A0PEkWB6lQcftZCLPJHFHDUYu4BPMxOmm+RG7IfBZdb/8kM+gVAfo+xK/1LVPgyC S5jF4VYtZ0SvxXfbq/nfwYCzfzBiYhnTsXhGeY7Hd7MWgjVFcIsldS5ExmMVFElU yW4RZLCheK7zEO8HbToD2adwR60tPM1OjGM3SBJv9ts7i5Q3annP5DU5Ylq+KqFI HOygOyMMRl25bwqeVRof/Ou++V5WZLsE+j0xJEmJA2tecYx+Au/X2e+7yEqXJ+di Gz2j2JyonMRXr75mu8Z+ErPB4O456X7LboiBbqQyoysoeHg8Q/rAu1fj4pXqaoqP AdU9HgVEuhg= =F0Sc -----END PGP SIGNATURE----- Sat Apr 29 04:07:56 UTC 2023 I: Checking whether the package is not for us Sat Apr 29 04:07:56 UTC 2023 I: Starting 1st build on remote node ionos6-i386.debian.net. Sat Apr 29 04:07:56 UTC 2023 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Sat Apr 29 04:09:42 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 30 22:30:57 -12 2024 I: pbuilder-time-stamp: 1717151457 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [delly_1.1.6-1.dsc] I: copying [./delly_1.1.6.orig.tar.xz] I: copying [./delly_1.1.6-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 14 01:38:30 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./delly_1.1.6-1.dsc: no acceptable signature found dpkg-source: info: extracting delly in delly-1.1.6 dpkg-source: info: unpacking delly_1.1.6.orig.tar.xz dpkg-source: info: unpacking delly_1.1.6-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/85996/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='23d12ea7628c4e8d8e4cf995f2af1a56' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='85996' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OWrqZcoh/pbuilderrc_P8Kz --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OWrqZcoh/b1 --logfile b1/build.log delly_1.1.6-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/85996/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbz2-dev{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 48.8 MB of archives. After unpacking 311 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 chrpath i386 0.16-2+b1 [17.5 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 22 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 libboost-date-time1.74.0 i386 1.74.0+ds1-20 [217 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 libboost-serialization1.74.0 i386 1.74.0+ds1-20 [325 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libboost-serialization1.74-dev i386 1.74.0+ds1-20 [368 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libboost-date-time1.74-dev i386 1.74.0+ds1-20 [226 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libboost-date-time-dev i386 1.74.0.3 [4332 B] Get: 39 http://deb.debian.org/debian bookworm/main i386 libboost-filesystem1.74.0 i386 1.74.0+ds1-20 [264 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libboost-system1.74.0 i386 1.74.0+ds1-20 [218 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libboost-system1.74-dev i386 1.74.0+ds1-20 [219 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libboost-filesystem1.74-dev i386 1.74.0+ds1-20 [286 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 libboost-filesystem-dev i386 1.74.0.3 [4368 B] Get: 44 http://deb.debian.org/debian bookworm/main i386 libboost-regex1.74.0 i386 1.74.0+ds1-20 [509 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB] Get: 46 http://deb.debian.org/debian bookworm/main i386 libboost-regex1.74-dev i386 1.74.0+ds1-20 [585 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libboost-iostreams1.74-dev i386 1.74.0+ds1-20 [250 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libboost-iostreams-dev i386 1.74.0.3 [4320 B] Get: 49 http://deb.debian.org/debian bookworm/main i386 libboost-program-options1.74.0 i386 1.74.0+ds1-20 [338 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libboost-program-options1.74-dev i386 1.74.0+ds1-20 [368 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libboost-program-options-dev i386 1.74.0.3 [4344 B] Get: 52 http://deb.debian.org/debian bookworm/main i386 libboost-system-dev i386 1.74.0.3 [4472 B] Get: 53 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libbz2-dev i386 1.0.8-5+b1 [31.5 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libcurl4-gnutls-dev i386 7.88.1-9 [527 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libdeflate-dev i386 1.14-1 [53.5 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 liblzma-dev i386 5.4.1-0.2 [272 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libhts-dev i386 1.16+ds-3 [1585 kB] Fetched 48.8 MB in 1s (82.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package chrpath. Preparing to unpack .../15-chrpath_0.16-2+b1_i386.deb ... Unpacking chrpath (0.16-2+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../23-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../25-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../31-icu-devtools_72.1-3_i386.deb ... Unpacking icu-devtools (72.1-3) ... Selecting previously unselected package libboost1.74-dev:i386. Preparing to unpack .../32-libboost1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost1.74-dev:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-date-time1.74.0:i386. Preparing to unpack .../33-libboost-date-time1.74.0_1.74.0+ds1-20_i386.deb ... Unpacking libboost-date-time1.74.0:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-serialization1.74.0:i386. Preparing to unpack .../34-libboost-serialization1.74.0_1.74.0+ds1-20_i386.deb ... Unpacking libboost-serialization1.74.0:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-serialization1.74-dev:i386. Preparing to unpack .../35-libboost-serialization1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost-serialization1.74-dev:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-date-time1.74-dev:i386. Preparing to unpack .../36-libboost-date-time1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost-date-time1.74-dev:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-date-time-dev:i386. Preparing to unpack .../37-libboost-date-time-dev_1.74.0.3_i386.deb ... Unpacking libboost-date-time-dev:i386 (1.74.0.3) ... Selecting previously unselected package libboost-filesystem1.74.0:i386. Preparing to unpack .../38-libboost-filesystem1.74.0_1.74.0+ds1-20_i386.deb ... Unpacking libboost-filesystem1.74.0:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-system1.74.0:i386. Preparing to unpack .../39-libboost-system1.74.0_1.74.0+ds1-20_i386.deb ... Unpacking libboost-system1.74.0:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-system1.74-dev:i386. Preparing to unpack .../40-libboost-system1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost-system1.74-dev:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-filesystem1.74-dev:i386. Preparing to unpack .../41-libboost-filesystem1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost-filesystem1.74-dev:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-filesystem-dev:i386. Preparing to unpack .../42-libboost-filesystem-dev_1.74.0.3_i386.deb ... Unpacking libboost-filesystem-dev:i386 (1.74.0.3) ... Selecting previously unselected package libboost-regex1.74.0:i386. Preparing to unpack .../43-libboost-regex1.74.0_1.74.0+ds1-20_i386.deb ... Unpacking libboost-regex1.74.0:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libicu-dev:i386. Preparing to unpack .../44-libicu-dev_72.1-3_i386.deb ... Unpacking libicu-dev:i386 (72.1-3) ... Selecting previously unselected package libboost-regex1.74-dev:i386. Preparing to unpack .../45-libboost-regex1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost-regex1.74-dev:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-iostreams1.74-dev:i386. Preparing to unpack .../46-libboost-iostreams1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost-iostreams1.74-dev:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-iostreams-dev:i386. Preparing to unpack .../47-libboost-iostreams-dev_1.74.0.3_i386.deb ... Unpacking libboost-iostreams-dev:i386 (1.74.0.3) ... 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Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libbz2-dev:i386. Preparing to unpack .../53-libbz2-dev_1.0.8-5+b1_i386.deb ... Unpacking libbz2-dev:i386 (1.0.8-5+b1) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../54-libsasl2-modules-db_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../55-libsasl2-2_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../56-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../57-libnghttp2-14_1.52.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.52.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../58-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../59-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../60-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:i386. Preparing to unpack .../61-libcurl3-gnutls_7.88.1-9_i386.deb ... Unpacking libcurl3-gnutls:i386 (7.88.1-9) ... Selecting previously unselected package libcurl4-gnutls-dev:i386. Preparing to unpack .../62-libcurl4-gnutls-dev_7.88.1-9_i386.deb ... Unpacking libcurl4-gnutls-dev:i386 (7.88.1-9) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../63-libdeflate0_1.14-1_i386.deb ... Unpacking libdeflate0:i386 (1.14-1) ... Selecting previously unselected package libdeflate-dev:i386. Preparing to unpack .../64-libdeflate-dev_1.14-1_i386.deb ... Unpacking libdeflate-dev:i386 (1.14-1) ... Selecting previously unselected package libhtscodecs2:i386. Preparing to unpack .../65-libhtscodecs2_1.3.0-4_i386.deb ... Unpacking libhtscodecs2:i386 (1.3.0-4) ... Selecting previously unselected package libhts3:i386. Preparing to unpack .../66-libhts3_1.16+ds-3_i386.deb ... Unpacking libhts3:i386 (1.16+ds-3) ... Selecting previously unselected package liblzma-dev:i386. Preparing to unpack .../67-liblzma-dev_5.4.1-0.2_i386.deb ... Unpacking liblzma-dev:i386 (5.4.1-0.2) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../68-zlib1g-dev_1%3a1.2.13.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libhts-dev:i386. Preparing to unpack .../69-libhts-dev_1.16+ds-3_i386.deb ... Unpacking libhts-dev:i386 (1.16+ds-3) ... Setting up libhtscodecs2:i386 (1.3.0-4) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libboost-system1.74.0:i386 (1.74.0+ds1-20) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libboost1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libicu72:i386 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-program-options1.74.0:i386 (1.74.0+ds1-20) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up libdeflate0:i386 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libboost-filesystem1.74.0:i386 (1.74.0+ds1-20) ... Setting up file (1:5.44-3) ... Setting up libboost-program-options1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libboost-program-options-dev:i386 (1.74.0.3) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libboost-system1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libboost-regex1.74.0:i386 (1.74.0+ds1-20) ... Setting up autopoint (0.21-12) ... Setting up icu-devtools (72.1-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:i386 (5.4.1-0.2) ... Setting up libboost-serialization1.74.0:i386 (1.74.0+ds1-20) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up libboost-filesystem1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libboost-date-time1.74.0:i386 (1.74.0+ds1-20) ... Setting up libdeflate-dev:i386 (1.14-1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libicu-dev:i386 (72.1-3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up libboost-filesystem-dev:i386 (1.74.0.3) ... Setting up chrpath (0.16-2+b1) ... Setting up libbz2-dev:i386 (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libboost-system-dev:i386 (1.74.0.3) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libboost-serialization1.74-dev:i386 (1.74.0+ds1-20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libboost-regex1.74-dev:i386 (1.74.0+ds1-20) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:i386 (7.88.1-9) ... Setting up libcurl4-gnutls-dev:i386 (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-iostreams1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libboost-date-time1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libboost-date-time-dev:i386 (1.74.0.3) ... Setting up libhts3:i386 (1.16+ds-3) ... Setting up libhts-dev:i386 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up libboost-iostreams-dev:i386 (1.74.0.3) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/delly-1.1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../delly_1.1.6-1_source.changes dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 1.1.6-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/delly-1.1.6' dh_auto_clean make -j16 distclean make[2]: Entering directory '/build/delly-1.1.6' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f src/delly src/delly.o rm -f src/delly make[2]: Leaving directory '/build/delly-1.1.6' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/build/delly-1.1.6' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/delly-1.1.6' dh_auto_build -- BUILT_PROGRAMS="src/delly" PARALLEL=1 make -j16 "INSTALL=install --strip-program=true" BUILT_PROGRAMS=src/delly PARALLEL=1 make[2]: Entering directory '/build/delly-1.1.6' g++ -g -O2 -ffile-prefix-map=/build/delly-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -isystem /usr/include/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/usr/include/htslib/ In file included from src/util.h:13, from src/delly.h:32, from src/delly.cpp:18: src/tags.h:67:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 67 | struct SortSVs : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from src/delly.cpp:3: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/util.h:59:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 59 | struct SortCNVs : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.h:35: src/coverage.h:51:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 51 | struct SortBp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:36, from src/delly.h:38: src/junction.h:37:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 37 | struct SortSRBamRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/junction.h:80:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 80 | struct SortJunction : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:37: src/cluster.h:42:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortBamRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/cluster.h:71:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 71 | struct SortEdgeRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:21: src/merge.h:67:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 67 | struct SortIScores : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:17, from src/delly.cpp:23: src/scan.h:33:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 33 | struct SortScanWindow : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:19: src/cnv.h:42:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortSVBreakpoint : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/i386-linux-gnu/c++/12/bits/c++allocator.h:33, from /usr/include/c++/12/bits/allocator.h:46, from /usr/include/c++/12/string:41: In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]', inlined from 'typename std::enable_if::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator; T = char; Args = {}]' at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from 'void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from 'void boost::multi_array::allocate_space() [with T = char; unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:548:29, inlined from 'boost::multi_array::multi_array(const Allocator&) [with T = char; unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/12/bits/new_allocator.h:175:11: warning: 'void* __builtin_memset(void*, int, unsigned int)' offset 0 is out of the bounds [0, 0] [-Warray-bounds] 175 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64, from /usr/include/boost/graph/adjacency_list.hpp:16, from src/delly.h:8: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]' at src/coverage.h:265:30: /usr/include/c++/12/bits/stl_vector.h:1032:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70: /usr/include/c++/12/bits/vector.tcc: In function 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/coverage.h:265:43: note: '' declared here 265 | covCount[file_c].resize(svs.size(), TCovPair()); | ^~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]' at src/tegua.h:177:26: /usr/include/c++/12/bits/stl_vector.h:1032:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In function 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]': /usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:22: src/tegua.h:177:39: note: '' declared here 177 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runAsm(TConfig&) [with TConfig = AsmConfig]' at src/asmode.h:337:26: /usr/include/c++/12/bits/stl_vector.h:1032:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In function 'int32_t torali::runAsm(TConfig&) [with TConfig = AsmConfig]': /usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:24: src/asmode.h:337:39: note: '' declared here 337 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ make[2]: Leaving directory '/build/delly-1.1.6' chrpath -d src/delly make[1]: Leaving directory '/build/delly-1.1.6' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/delly-1.1.6' # avoiding redundant compile of delly make[1]: Leaving directory '/build/delly-1.1.6' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'delly' in '../delly_1.1.6-1_i386.deb'. dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_1.1.6-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../delly_1.1.6-1_i386.buildinfo dpkg-genchanges --build=binary -O../delly_1.1.6-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/85996 and its subdirectories I: Current time: Thu May 30 22:32:41 -12 2024 I: pbuilder-time-stamp: 1717151561 Sat Apr 29 04:09:42 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Sat Apr 29 04:09:42 UTC 2023 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Sat Apr 29 04:12:19 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. Sat Apr 29 04:12:20 UTC 2023 I: delly_1.1.6-1_i386.changes: Format: 1.8 Date: Sat, 12 Nov 2022 15:53:21 +0000 Source: delly Binary: delly delly-dbgsym Architecture: i386 Version: 1.1.6-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Mohammed Bilal Description: delly - Structural variant discovery by read analysis Changes: delly (1.1.6-1) unstable; urgency=medium . * Team upload. * New upstream version Checksums-Sha1: 17f9f624cd94b2f0bba16dc106f8593bf2796ce3 5359732 delly-dbgsym_1.1.6-1_i386.deb ff7bd9e5763817804a2e53c4eab91241d30d3813 6734 delly_1.1.6-1_i386.buildinfo 83ec84f63a9b6e4fa7f47d9af3957c9b685e7e06 346720 delly_1.1.6-1_i386.deb Checksums-Sha256: 25182e2837221a2fd7c1fd86058717774adecba393c578862898d6450453d1b9 5359732 delly-dbgsym_1.1.6-1_i386.deb 58268f1e2e7234b54e9244e6f00ba9dbe220eefeeedbc76d7a5134c32e22a243 6734 delly_1.1.6-1_i386.buildinfo 67cce19a6bceaae1c0d8e9b55d25e4daae1b2a748df44fe3e3a2ad7688447b4a 346720 delly_1.1.6-1_i386.deb Files: 745a37195a3d9d00dd40d7697166f178 5359732 debug optional delly-dbgsym_1.1.6-1_i386.deb 65f5bd3627ba12fb24d51158db52b35d 6734 science optional delly_1.1.6-1_i386.buildinfo 6d4666613b5d60b7a8aabb3e417e3abc 346720 science optional delly_1.1.6-1_i386.deb Sat Apr 29 04:12:21 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.OWrqZcoh/delly_1.1.6-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.OWrqZcoh/delly_1.1.6-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.OWrqZcoh/delly_1.1.6-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.OWrqZcoh/b1/delly_1.1.6-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.OWrqZcoh/b2/delly_1.1.6-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.396s) 0.396s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.083s) 0.083s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sat Apr 29 04:12:22 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 29 04:12:22 UTC 2023 I: delly from bookworm built successfully and reproducibly on i386. Sat Apr 29 04:12:28 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Apr 29 04:12:29 UTC 2023 I: Submitting 8.0K b1/delly_1.1.6-1_i386.buildinfo.asc Sat Apr 29 04:12:30 UTC 2023 I: Submitting 8.0K b2/delly_1.1.6-1_i386.buildinfo.asc Sat Apr 29 04:12:30 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 29 04:12:30 UTC 2023 I: Done submitting .buildinfo files. Sat Apr 29 04:12:30 UTC 2023 I: Removing signed delly_1.1.6-1_i386.buildinfo.asc files: removed './b1/delly_1.1.6-1_i386.buildinfo.asc' removed './b2/delly_1.1.6-1_i386.buildinfo.asc'