Thu Apr 13 12:34:30 UTC 2023 I: starting to build chip-seq/bookworm/i386 on jenkins on '2023-04-13 12:34' Thu Apr 13 12:34:30 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/6330/console.log Thu Apr 13 12:34:30 UTC 2023 I: Downloading source for bookworm/chip-seq=1.5.5-3 --2023-04-13 12:34:30-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/chip-seq/chip-seq_1.5.5-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2020 (2.0K) [text/prs.lines.tag] Saving to: ‘chip-seq_1.5.5-3.dsc’ 0K . 100% 107M=0s 2023-04-13 12:34:30 (107 MB/s) - ‘chip-seq_1.5.5-3.dsc’ saved [2020/2020] Thu Apr 13 12:34:30 UTC 2023 I: chip-seq_1.5.5-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: chip-seq Binary: chip-seq, chip-seq-data Architecture: any all Version: 1.5.5-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://ccg.epfl.ch//chipseq Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/chip-seq Vcs-Git: https://salsa.debian.org/med-team/chip-seq.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12) Package-List: chip-seq deb science optional arch=any chip-seq-data deb science optional arch=all Checksums-Sha1: c1d0fe6c413dbfcfc248a9ed2f49838a4b1384ac 5257567 chip-seq_1.5.5.orig.tar.gz 08d2558d0740ecc3cf754e4effad0821503c13fc 8840 chip-seq_1.5.5-3.debian.tar.xz Checksums-Sha256: ce432340e879a629001ecc4c14886e974ec3caea1b723e41f1a7a1a431a2a035 5257567 chip-seq_1.5.5.orig.tar.gz 654d5dadedc5c1fa9e46f65a6ffdc1fa1571715e80f4c1b6e5908a63047e20b1 8840 chip-seq_1.5.5-3.debian.tar.xz Files: 4e08c0558e2304415c766fa0bd3cbebd 5257567 chip-seq_1.5.5.orig.tar.gz 1c60740cc4de88131a34ce223804e7d5 8840 chip-seq_1.5.5-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6AfK0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH9pw//Q+k06DReYj+ySxxsnc8PjyhPAOXtBVJQ Wfl8dGzJBxSDbhoVk8D3U2kPnNkZ93NxJW04YE1VqyzHxWwAYRfLDd/0bR+rTnCy G72eBesSbwHq3IA2UA/aSaLJYhxHNBapKRZE4ecHRCkUqxEME3qRRhDK6t+YBzhW kFrKLcJ+E6urKBUZtVjJuvPxhVNkFf6yFsnblmXe6rSr6NmM6iDUe83yM474vL0s nabkrmIV79lSVnUKzJfmnDP9/4jlgJDiCYk6Zf4SsliTualE2QoWxHVemBODz74m BM6XEzVco47aUHrwgPIQzE1CJaPH4fbm5yfPZrIue4JjnBBCbZPjSALzi882+I0G qzE4GV7Xh+wByeN+H8BNnw3q7v1Shlhb6+rTkPHiA5Vu4oCfDuohdYGrqpyv4RM8 tR+E+MEHsZNxATRFT9Q/yK8tmhZLkwsruj1nEjTTGMK+1HSXERpkOHYw2uDh6BWj 2+MaQdMPgrpoWcf3KZNH6fjzxE4NiuEmVpnB50Y4SAnO7qiOw6sa6tEvJIFxNsOu RvKXzfqJ1kp9y60rugsFZA4xBuVAevhhNMADknkWL9jj5UWrJU7O4c+dtqcOhfZI FfMUFJY+A6AX7XdeaiOqvGCShFZ1HoxLKzxZjcQXfjOTf34D24pcOabTGTguQaJH AeXBodqO+88= =qQRt -----END PGP SIGNATURE----- Thu Apr 13 12:34:30 UTC 2023 I: Checking whether the package is not for us Thu Apr 13 12:34:31 UTC 2023 I: Starting 1st build on remote node ionos16-i386.debian.net. Thu Apr 13 12:34:31 UTC 2023 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Thu Apr 13 12:35:10 UTC 2023 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 15 06:57:31 -12 2024 I: pbuilder-time-stamp: 1715799451 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [chip-seq_1.5.5-3.dsc] I: copying [./chip-seq_1.5.5.orig.tar.gz] I: copying [./chip-seq_1.5.5-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Mar 28 22:47:09 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./chip-seq_1.5.5-3.dsc: no acceptable signature found dpkg-source: info: extracting chip-seq in chip-seq-1.5.5 dpkg-source: info: unpacking chip-seq_1.5.5.orig.tar.gz dpkg-source: info: unpacking chip-seq_1.5.5-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_makefile.patch dpkg-source: info: applying data_location.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/96659/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='936d34abdf2640398a87a897690736fb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='96659' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ox9o6u9f/pbuilderrc_YURE --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ox9o6u9f/b1 --logfile b1/build.log chip-seq_1.5.5-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 6040 -rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 18 2022 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/96659/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 72.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Fetched 19.0 MB in 1s (25.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/chip-seq-1.5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../chip-seq_1.5.5-3_source.changes dpkg-buildpackage: info: source package chip-seq dpkg-buildpackage: info: source version 1.5.5-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/chip-seq-1.5.5' rm -rf chipcor chipextract chippart chippeak chipcenter chipscore tools/compactsga tools/countsga tools/featreplace tools/filter_counts tools/bed2sga tools/bed2bed_display tools/sga2bed tools/sga2wig *.o *~ make[1]: Leaving directory '/build/chip-seq-1.5.5' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/chip-seq-1.5.5' gcc -g -O2 -ffile-prefix-map=/build/chip-seq-1.5.5=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o chipcor chipcor.c gcc -g -O2 -ffile-prefix-map=/build/chip-seq-1.5.5=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o chipextract chipextract.c gcc -g -O2 -ffile-prefix-map=/build/chip-seq-1.5.5=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o chippart chippart.c gcc -g -O2 -ffile-prefix-map=/build/chip-seq-1.5.5=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashtable.o hashtable.c gcc -g -O2 -ffile-prefix-map=/build/chip-seq-1.5.5=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o chipscore chipscore.c gcc -g -O2 -ffile-prefix-map=/build/chip-seq-1.5.5=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o tools/compactsga tools/compactsga.c gcc -g -O2 -ffile-prefix-map=/build/chip-seq-1.5.5=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o tools/countsga tools/countsga.c gcc -g -O2 -ffile-prefix-map=/build/chip-seq-1.5.5=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o tools/featreplace tools/featreplace.c gcc -g -O2 -ffile-prefix-map=/build/chip-seq-1.5.5=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o tools/filter_counts tools/filter_counts.c hashtable.c: In function 'MurmurHash3_x86_32': hashtable.c:539:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 539 | case 3: k1 ^= tail[2] << 16; | ~~~^~~~~~~~~~~~~~~~ hashtable.c:540:3: note: here 540 | case 2: k1 ^= tail[1] << 8; | ^~~~ hashtable.c:540:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 540 | case 2: k1 ^= tail[1] << 8; | ~~~^~~~~~~~~~~~~~~ hashtable.c:541:3: note: here 541 | case 1: k1 ^= tail[0]; | ^~~~ gcc -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm -o chippeak chippeak.c hashtable.o gcc -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm -o chipcenter chipcenter.c hashtable.o gcc -o tools/bed2sga tools/bed2sga.c hashtable.o -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm gcc -o tools/bed2bed_display tools/bed2bed_display.c hashtable.o -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm gcc -o tools/sga2bed tools/sga2bed.c hashtable.o -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm gcc -o tools/sga2wig tools/sga2wig.c hashtable.o -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm tools/bed2bed_display.c: In function 'main': tools/bed2bed_display.c:564:7: warning: '__builtin_memcpy' writing 6 bytes into a region of size 5 [-Wstringop-overflow=] 564 | strcpy(options.visibility, "dense"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools/bed2bed_display.c:557:31: note: destination object of size 5 allocated by 'malloc' 557 | if ((options.visibility = malloc(5 * sizeof(char))) == NULL) { | ^~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/chip-seq-1.5.5' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j16 install DESTDIR=/build/chip-seq-1.5.5/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/chip-seq-1.5.5' mkdir -p /build/chip-seq-1.5.5/debian/tmp/usr/bin mv chipcor chipextract chippart chippeak chipcenter chipscore tools/compactsga tools/countsga tools/featreplace tools/filter_counts tools/bed2sga tools/bed2bed_display tools/sga2bed tools/sga2wig /build/chip-seq-1.5.5/debian/tmp/usr/bin cp -p tools/check_bed.pl tools/chr_replace_sga.pl tools/eland2sga.pl tools/fps2sga.pl tools/gff2sga.pl tools/partit2bed.pl tools/partit2gff.pl tools/sga2fps.pl tools/sga2gff.pl /build/chip-seq-1.5.5/debian/tmp/usr/bin make[1]: Leaving directory '/build/chip-seq-1.5.5' debian/rules override_dh_install make[1]: Entering directory '/build/chip-seq-1.5.5' dh_install for perlscript in `grep -lR '#!/usr/local/bin/perl' debian/*/usr` ; do \ sed -i '1s+#!/usr/local/bin/perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/build/chip-seq-1.5.5' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/chip-seq-1.5.5' dh_installman --language=C make[1]: Leaving directory '/build/chip-seq-1.5.5' dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/chip-seq-1.5.5' dh_fixperms -i find debian/chip-seq-data/usr/share/chip-seq/ -type f -exec chmod -x \{\} \; make[1]: Leaving directory '/build/chip-seq-1.5.5' dh_fixperms -Nchip-seq-data dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package chip-seq: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package chip-seq: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'chip-seq' in '../chip-seq_1.5.5-3_i386.deb'. dpkg-deb: building package 'chip-seq-dbgsym' in '../chip-seq-dbgsym_1.5.5-3_i386.deb'. dpkg-deb: building package 'chip-seq-data' in '../chip-seq-data_1.5.5-3_all.deb'. dpkg-genbuildinfo --build=binary -O../chip-seq_1.5.5-3_i386.buildinfo dpkg-genchanges --build=binary -O../chip-seq_1.5.5-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/96659 and its subdirectories I: Current time: Wed May 15 06:58:08 -12 2024 I: pbuilder-time-stamp: 1715799488 Thu Apr 13 12:35:10 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Thu Apr 13 12:35:10 UTC 2023 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Thu Apr 13 12:36:24 UTC 2023 I: Deleting $TMPDIR on ionos12-i386.debian.net. Thu Apr 13 12:36:24 UTC 2023 I: chip-seq_1.5.5-3_i386.changes: Format: 1.8 Date: Sun, 29 Mar 2020 12:44:42 +0200 Source: chip-seq Binary: chip-seq chip-seq-data chip-seq-dbgsym Architecture: all i386 Version: 1.5.5-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: chip-seq - tools performing common ChIP-Seq data analysis tasks chip-seq-data - tools performing common ChIP-Seq data analysis tasks (data) Changes: chip-seq (1.5.5-3) unstable; urgency=medium . * Fix arch only build Checksums-Sha1: 747b5125f5190f61437a00fdf2be5ea1b4616363 3003644 chip-seq-data_1.5.5-3_all.deb 7b4b7a3ad597e30ecea87b1c47970009be1e7563 101672 chip-seq-dbgsym_1.5.5-3_i386.deb b8695b9b3aef9f48728de7e1753e097ec6563e63 5352 chip-seq_1.5.5-3_i386.buildinfo c0713a12e390eac58807ecf6a4cefa5b05734ed0 100396 chip-seq_1.5.5-3_i386.deb Checksums-Sha256: f447726c1aeb4e7e74ab00ab9d244cb7e881555aae7a761538fab52d013383ff 3003644 chip-seq-data_1.5.5-3_all.deb 60eceff4ef1eb995f3376e9c5a06f57ae06c543e7e208ba7d4f78cdc3eb86982 101672 chip-seq-dbgsym_1.5.5-3_i386.deb e823064d54ccc789e989d9596681d6703337773ebb7d51abbf50bfac174f3b09 5352 chip-seq_1.5.5-3_i386.buildinfo 96899afa74d83381202a25700134815a5810c9210b1f060b5a6d0da06614a7b5 100396 chip-seq_1.5.5-3_i386.deb Files: ac9e1ca4ebdfa04beacaad8180d17898 3003644 science optional chip-seq-data_1.5.5-3_all.deb 8ceb0a59c76fb0372c01fd6e641952d0 101672 debug optional chip-seq-dbgsym_1.5.5-3_i386.deb 8f1ed78f564d39d7d9dd8a6ee1fa87f2 5352 science optional chip-seq_1.5.5-3_i386.buildinfo 7f73e6861b3fb6c96125294b37b5f327 100396 science optional chip-seq_1.5.5-3_i386.deb Thu Apr 13 12:36:26 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ox9o6u9f/chip-seq_1.5.5-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ox9o6u9f/chip-seq_1.5.5-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ox9o6u9f/chip-seq_1.5.5-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ox9o6u9f/b1/chip-seq_1.5.5-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.ox9o6u9f/b2/chip-seq_1.5.5-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.619s) 0.619s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.066s) 0.066s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Thu Apr 13 12:36:28 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 13 12:36:28 UTC 2023 I: chip-seq from bookworm built successfully and reproducibly on i386. Thu Apr 13 12:36:29 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 13 12:36:29 UTC 2023 I: Submitting 8.0K b1/chip-seq_1.5.5-3_i386.buildinfo.asc Thu Apr 13 12:36:30 UTC 2023 I: Submitting 8.0K b2/chip-seq_1.5.5-3_i386.buildinfo.asc Thu Apr 13 12:36:31 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 13 12:36:31 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 13 12:36:31 UTC 2023 I: Removing signed chip-seq_1.5.5-3_i386.buildinfo.asc files: removed './b1/chip-seq_1.5.5-3_i386.buildinfo.asc' removed './b2/chip-seq_1.5.5-3_i386.buildinfo.asc'