Wed Jun 7 13:32:35 UTC 2023 I: starting to build r-bioc-genomicfiles/bookworm/armhf on jenkins on '2023-06-07 13:32' Wed Jun 7 13:32:35 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_14/9375/console.log Wed Jun 7 13:32:35 UTC 2023 I: Downloading source for bookworm/r-bioc-genomicfiles=1.34.0-1 --2023-06-07 13:32:36-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-genomicfiles/r-bioc-genomicfiles_1.34.0-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2385 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-genomicfiles_1.34.0-1.dsc’ 0K .. 100% 287M=0s 2023-06-07 13:32:36 (287 MB/s) - ‘r-bioc-genomicfiles_1.34.0-1.dsc’ saved [2385/2385] Wed Jun 7 13:32:36 UTC 2023 I: r-bioc-genomicfiles_1.34.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-genomicfiles Binary: r-bioc-genomicfiles Architecture: all Version: 1.34.0-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/GenomicFiles/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomicfiles Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomicfiles.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-matrixgenerics, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-genomicalignments, r-bioc-iranges, r-bioc-s4vectors, r-bioc-variantannotation, r-bioc-genomeinfodb Package-List: r-bioc-genomicfiles deb gnu-r optional arch=all Checksums-Sha1: 7393fb3005aadb5ceb9f2160772b5702a72f50a7 684101 r-bioc-genomicfiles_1.34.0.orig.tar.gz d3168a1685f27251b7a5ddf437ae4b0d039b46eb 5080 r-bioc-genomicfiles_1.34.0-1.debian.tar.xz Checksums-Sha256: a11026ba7461816097b889aa1148f4c5d3227b041e1ed4384817215f5caac44c 684101 r-bioc-genomicfiles_1.34.0.orig.tar.gz d788be6022359670031c23888bbe61ff8591deb6da73e4df0bd44ba3ad98a5fb 5080 r-bioc-genomicfiles_1.34.0-1.debian.tar.xz Files: 03264fd9bf67d47d3e8844b3307affa5 684101 r-bioc-genomicfiles_1.34.0.orig.tar.gz 151d28c66052717e586b92d0c217b149 5080 r-bioc-genomicfiles_1.34.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN8bTARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHlUw//VY9oFTMa4tF0D5lRgYW6zM1yULXrjzya B9/4bQ+Ne318bZTGO9sH8wziNuEVhe+fXrFu7b9gr6kvYTj/+IM9mm8g4apzJfFW Fdnp/6XaEQm+5I68izsSlyaZX6rGbhLk+vUS6GS18+VnTD24SqzgcnfPO5Vz9LS7 Fy9egV8m5tSS0fnfcCr0RI6vggFnxd6rdyg7XpLbnI/wFdge4+BvkydHrNnLDbgG VL2hzx3T/BParhGWVHvAu5yS3HN01G3by9gpkV2Oo/OXcsWAMcWCG4dkcSD2Ljzz 6B7ApfwJ99H1Jj9wyB6YySxElnSK0gDkDS+OZWD+PFl+IxXbTQOJiSI78Yr+6c9G 6tjLqBeg3UG2F5HA+pbblTrXB7Pqt2cmemgRA6gABQiYpIJTtqnXFrw+tt4CGt8m Wl31VSSWT1OPg3kwuD/osoB3ZpfGR5yarf8VkOZVFNvdjcDtMqMkFLXiHQO+aRBN F2rjxo3K4xgeJaLw9qN20oA1e5916DMRaBhmac70uvzh1iX07BdD3HBtaVlmsr8S 8qhBHgQVdJAEJ0qgbGtA4CNcWwUpKrnh01/1m2LAw5nJIZD71QNw7EVTLK9ueaTm hBbB734v+zBQ/KfCtvyYTt06sqynYUZi0YUSVXr7Ok7KhhZUeetOLWVELxrS8TFe 7j7ir+bvYLA= =q7mD -----END PGP SIGNATURE----- Wed Jun 7 13:32:36 UTC 2023 I: Checking whether the package is not for us Wed Jun 7 13:32:36 UTC 2023 I: Starting 1st build on remote node virt32a-armhf-rb.debian.net. Wed Jun 7 13:32:36 UTC 2023 I: Preparing to do remote build '1' on virt32a-armhf-rb.debian.net. Wed Jun 7 13:40:41 UTC 2023 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 7 01:32:46 -12 2023 I: pbuilder-time-stamp: 1686144766 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-genomicfiles_1.34.0-1.dsc] I: copying [./r-bioc-genomicfiles_1.34.0.orig.tar.gz] I: copying [./r-bioc-genomicfiles_1.34.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 21 18:33:20 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.34.0-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-genomicfiles in r-bioc-genomicfiles-1.34.0 dpkg-source: info: unpacking r-bioc-genomicfiles_1.34.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-genomicfiles_1.34.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25952/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='238e07c5661d4fea87b066dc90a8cff8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25952' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mHH0I2w5/pbuilderrc_j3Xr --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mHH0I2w5/b1 --logfile b1/build.log r-bioc-genomicfiles_1.34.0-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32a 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/25952/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-matrixgenerics, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-genomicalignments, r-bioc-iranges, r-bioc-s4vectors, r-bioc-variantannotation, r-bioc-genomeinfodb dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-matrixgenerics; however: Package r-bioc-matrixgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools; however: Package r-bioc-rsamtools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer; however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicalignments; however: Package r-bioc-genomicalignments is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-variantannotation; however: Package r-bioc-variantannotation is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb; however: Package r-bioc-genomeinfodb is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} node-html5shiv{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-annotationdbi{a} r-bioc-biobase{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biomart{a} r-bioc-biostrings{a} r-bioc-bsgenome{a} r-bioc-delayedarray{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicfeatures{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-matrixgenerics{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4vectors{a} r-bioc-summarizedexperiment{a} r-bioc-variantannotation{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-assertthat{a} r-cran-bh{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-cachem{a} r-cran-cli{a} r-cran-codetools{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-fansi{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-generics{a} r-cran-glue{a} r-cran-hms{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-snow{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} r-cran-xml{a} r-cran-xml2{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-biovizbase r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-covr r-cran-data.table r-cran-dbitest r-cran-decor r-cran-formattable r-cran-ggplot2 r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-knitr r-cran-lobstr r-cran-lubridate r-cran-mockery r-cran-mockr r-cran-pkgload r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-runit r-cran-sodium r-cran-sp r-cran-survival r-cran-testit r-cran-testthat r-cran-tidyr r-cran-waldo r-cran-webutils r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 274 newly installed, 0 to remove and 0 not upgraded. Need to get 202 MB of archives. After unpacking 555 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf openssl armhf 3.0.9-1 [1381 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf ca-certificates all 20230311 [153 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 26 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf zip armhf 3.0-13 [218 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf unzip armhf 6.0-28 [152 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 40 http://deb.debian.org/debian bookworm/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libpixman-1-0 armhf 0.42.2-1 [465 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2 [292 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2 [695 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libcairo2 armhf 1.16.0-7 [493 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-10 [347 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf fontconfig armhf 2.14.1-4 [448 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libthai-data all 0.1.29-1 [176 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf libdatrie1 armhf 0.2.13-2+b1 [39.9 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf libthai0 armhf 0.1.29-1 [54.3 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf libpango-1.0-0 armhf 1.50.12+ds-1 [188 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libpangoft2-1.0-0 armhf 1.50.12+ds-1 [40.9 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libpangocairo-1.0-0 armhf 1.50.12+ds-1 [30.3 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.2 [242 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-6 [295 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libxft2 armhf 2.3.6-1 [53.8 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf libtk8.6 armhf 8.6.13-2 [689 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf r-base-core armhf 4.2.2.20221110-2 [25.6 MB] Get: 98 http://deb.debian.org/debian bookworm/main armhf libgfortran-12-dev armhf 12.2.0-14 [298 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf gfortran-12 armhf 12.2.0-14 [7633 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf gfortran armhf 4:12.2.0-3 [1424 B] Get: 101 http://deb.debian.org/debian bookworm/main armhf libblas-dev armhf 3.11.0-2 [115 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf liblapack-dev armhf 3.11.0-2 [1798 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf libncurses6 armhf 6.4-4 [81.1 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf libncurses-dev armhf 6.4-4 [311 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf libncurses5-dev armhf 6.4-4 [932 B] Get: 106 http://deb.debian.org/debian bookworm/main armhf libreadline-dev armhf 8.2-1.3 [136 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [260 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf libpcre2-16-0 armhf 10.42-1 [211 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf libpcre2-32-0 armhf 10.42-1 [203 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf libpcre2-posix3 armhf 10.42-1 [55.0 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf libpcre2-dev armhf 10.42-1 [666 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf libpcre3 armhf 2:8.39-15 [315 kB] Get: 114 http://deb.debian.org/debian bookworm/main armhf libpcre16-3 armhf 2:8.39-15 [235 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf libpcre32-3 armhf 2:8.39-15 [226 kB] Get: 116 http://deb.debian.org/debian bookworm/main armhf libpcrecpp0v5 armhf 2:8.39-15 [141 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf libpcre3-dev armhf 2:8.39-15 [591 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf libpng-dev armhf 1.6.39-2 [343 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf libbz2-dev armhf 1.0.8-5+b1 [28.1 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf liblzma-dev armhf 5.4.1-0.2 [248 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf icu-devtools armhf 72.1-3 [183 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf libicu-dev armhf 72.1-3 [10.1 MB] Get: 124 http://deb.debian.org/debian bookworm/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf xauth armhf 1:1.1.2-1 [33.2 kB] Get: 126 http://deb.debian.org/debian bookworm/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf pkgconf-bin armhf 1.8.1-1 [28.5 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf pkgconf armhf 1.8.1-1 [25.9 kB] Get: 129 http://deb.debian.org/debian bookworm/main armhf pkg-config armhf 1.8.1-1 [13.7 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf r-base-dev all 4.2.2.20221110-2 [4492 B] Get: 131 http://deb.debian.org/debian bookworm/main armhf libfile-which-perl all 1.27-2 [15.1 kB] Get: 132 http://deb.debian.org/debian bookworm/main armhf libswitch-perl all 2.17-3 [20.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf libclone-perl armhf 0.46-1 [13.1 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf libhttp-date-perl all 6.05-2 [10.5 kB] Get: 137 http://deb.debian.org/debian bookworm/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 138 http://deb.debian.org/debian bookworm/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 140 http://deb.debian.org/debian bookworm/main armhf liburi-perl all 5.17-1 [90.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main armhf libhttp-message-perl all 6.44-1 [81.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main armhf libparams-util-perl armhf 1.102-2+b1 [23.8 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf libsub-install-perl all 0.929-1 [10.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main armhf libdata-optlist-perl all 0.113-1 [10.6 kB] Get: 145 http://deb.debian.org/debian bookworm/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB] Get: 146 http://deb.debian.org/debian bookworm/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.7 kB] Get: 148 http://deb.debian.org/debian bookworm/main armhf libparams-classify-perl armhf 0.015-2+b1 [21.9 kB] Get: 149 http://deb.debian.org/debian bookworm/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 150 http://deb.debian.org/debian bookworm/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 151 http://deb.debian.org/debian bookworm/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 152 http://deb.debian.org/debian bookworm/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 153 http://deb.debian.org/debian bookworm/main armhf libclass-load-perl all 0.25-2 [15.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.7 kB] Get: 155 http://deb.debian.org/debian bookworm/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 156 http://deb.debian.org/debian bookworm/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 157 http://deb.debian.org/debian bookworm/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 158 http://deb.debian.org/debian bookworm/main armhf libclass-c3-perl all 0.35-2 [21.0 kB] Get: 159 http://deb.debian.org/debian bookworm/main armhf libmro-compat-perl all 0.15-2 [11.8 kB] Get: 160 http://deb.debian.org/debian bookworm/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 161 http://deb.debian.org/debian bookworm/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 162 http://deb.debian.org/debian bookworm/main armhf libsub-exporter-perl all 0.989-1 [50.5 kB] Get: 163 http://deb.debian.org/debian bookworm/main armhf libeval-closure-perl all 0.14-3 [11.2 kB] Get: 164 http://deb.debian.org/debian bookworm/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 165 http://deb.debian.org/debian bookworm/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 166 http://deb.debian.org/debian bookworm/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 167 http://deb.debian.org/debian bookworm/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB] Get: 168 http://deb.debian.org/debian bookworm/main armhf libmoose-perl armhf 2.2203-1 [793 kB] Get: 169 http://deb.debian.org/debian bookworm/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.5 kB] Get: 170 http://deb.debian.org/debian bookworm/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get: 171 http://deb.debian.org/debian bookworm/main armhf libsub-identify-perl armhf 0.14-3 [10.5 kB] Get: 172 http://deb.debian.org/debian bookworm/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB] Get: 173 http://deb.debian.org/debian bookworm/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 174 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-10 [343 kB] Get: 175 http://deb.debian.org/debian bookworm/main armhf libwww-curl-perl armhf 4.17-10 [56.1 kB] Get: 176 http://deb.debian.org/debian bookworm/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 177 http://deb.debian.org/debian bookworm/main armhf dh-r all 20230121 [37.9 kB] Get: 178 http://deb.debian.org/debian bookworm/main armhf libboost1.74-dev armhf 1.74.0+ds1-21 [9508 kB] Get: 179 http://deb.debian.org/debian bookworm/main armhf libboost-dev armhf 1.74.0.3 [4548 B] Get: 180 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 181 http://deb.debian.org/debian bookworm/main armhf node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 182 http://deb.debian.org/debian bookworm/main armhf r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get: 183 http://deb.debian.org/debian bookworm/main armhf r-bioc-biobase armhf 2.58.0-2 [2111 kB] Get: 184 http://deb.debian.org/debian bookworm/main armhf r-bioc-s4vectors armhf 0.36.1-1 [2020 kB] Get: 185 http://deb.debian.org/debian bookworm/main armhf r-bioc-iranges armhf 2.32.0-1 [2215 kB] Get: 186 http://deb.debian.org/debian bookworm/main armhf r-cran-dbi all 1.1.3-1 [687 kB] Get: 187 http://deb.debian.org/debian bookworm/main armhf r-cran-bit armhf 4.0.5-1 [1060 kB] Get: 188 http://deb.debian.org/debian bookworm/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB] Get: 189 http://deb.debian.org/debian bookworm/main armhf r-cran-rlang armhf 1.0.6-1 [1612 kB] Get: 190 http://deb.debian.org/debian bookworm/main armhf r-cran-cli armhf 3.6.0-1 [1276 kB] Get: 191 http://deb.debian.org/debian bookworm/main armhf r-cran-glue armhf 1.6.2-1 [151 kB] Get: 192 http://deb.debian.org/debian bookworm/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get: 193 http://deb.debian.org/debian bookworm/main armhf r-cran-vctrs armhf 0.5.2-1 [1342 kB] Get: 194 http://deb.debian.org/debian bookworm/main armhf r-cran-blob all 1.2.3-1 [49.5 kB] Get: 195 http://deb.debian.org/debian bookworm/main armhf r-cran-fastmap armhf 1.1.1-1 [66.7 kB] Get: 196 http://deb.debian.org/debian bookworm/main armhf r-cran-cachem armhf 1.0.7-1 [71.5 kB] Get: 197 http://deb.debian.org/debian bookworm/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 198 http://deb.debian.org/debian bookworm/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 199 http://deb.debian.org/debian bookworm/main armhf r-cran-littler armhf 0.3.17-1 [93.4 kB] Get: 200 http://deb.debian.org/debian bookworm/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get: 201 http://deb.debian.org/debian bookworm/main armhf r-cran-rcpp armhf 1.0.10-1 [2042 kB] Get: 202 http://deb.debian.org/debian bookworm/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 203 http://deb.debian.org/debian bookworm/main armhf r-cran-rsqlite armhf 2.2.20-1 [1017 kB] Get: 204 http://deb.debian.org/debian bookworm/main armhf r-cran-curl armhf 5.0.0+dfsg-1 [170 kB] Get: 205 http://deb.debian.org/debian bookworm/main armhf r-cran-jsonlite armhf 1.8.4+dfsg-1 [438 kB] Get: 206 http://deb.debian.org/debian bookworm/main armhf r-cran-mime armhf 0.12-1+b1 [35.9 kB] Get: 207 http://deb.debian.org/debian bookworm/main armhf r-cran-sys armhf 3.4.1-1 [42.1 kB] Get: 208 http://deb.debian.org/debian bookworm/main armhf r-cran-askpass armhf 1.1-2 [22.0 kB] Get: 209 http://deb.debian.org/debian bookworm/main armhf r-cran-openssl armhf 2.0.5+dfsg-1 [387 kB] Get: 210 http://deb.debian.org/debian bookworm/main armhf r-cran-r6 all 2.5.1-1 [105 kB] Get: 211 http://deb.debian.org/debian bookworm/main armhf r-cran-httr all 1.4.5+dfsg-1 [465 kB] Get: 212 http://deb.debian.org/debian bookworm/main armhf r-cran-png armhf 0.1-8-1 [40.1 kB] Get: 213 http://deb.debian.org/debian bookworm/main armhf r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B] Get: 214 http://deb.debian.org/debian bookworm/main armhf r-bioc-xvector armhf 0.38.0-1 [612 kB] Get: 215 http://deb.debian.org/debian bookworm/main armhf r-cran-bitops armhf 1.0-7-1 [30.0 kB] Get: 216 http://deb.debian.org/debian bookworm/main armhf r-cran-rcurl armhf 1.98-1.10+dfsg-1 [780 kB] Get: 217 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB] Get: 218 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomeinfodb all 1.34.9-1 [3938 kB] Get: 219 http://deb.debian.org/debian bookworm/main armhf r-cran-crayon all 1.5.2-1 [165 kB] Get: 220 http://deb.debian.org/debian bookworm/main armhf r-bioc-biostrings armhf 2.66.0-1 [13.8 MB] Get: 221 http://deb.debian.org/debian bookworm/main armhf r-bioc-keggrest all 1.38.0+dfsg-1 [179 kB] Get: 222 http://deb.debian.org/debian bookworm/main armhf r-bioc-annotationdbi all 1.60.0-1 [4696 kB] Get: 223 http://deb.debian.org/debian bookworm/main armhf r-cran-assertthat all 0.2.1-2 [56.5 kB] Get: 224 http://deb.debian.org/debian bookworm/main armhf r-cran-generics all 0.1.3-1 [81.4 kB] Get: 225 http://deb.debian.org/debian bookworm/main armhf r-cran-magrittr armhf 2.0.3-1 [201 kB] Get: 226 http://deb.debian.org/debian bookworm/main armhf r-cran-fansi armhf 1.0.4-1 [609 kB] Get: 227 http://deb.debian.org/debian bookworm/main armhf r-cran-utf8 armhf 1.2.3-1 [129 kB] Get: 228 http://deb.debian.org/debian bookworm/main armhf r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get: 229 http://deb.debian.org/debian bookworm/main armhf r-cran-tibble armhf 3.1.8+dfsg-1 [513 kB] Get: 230 http://deb.debian.org/debian bookworm/main armhf r-cran-withr all 2.5.0-1 [236 kB] Get: 231 http://deb.debian.org/debian bookworm/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [219 kB] Get: 232 http://deb.debian.org/debian bookworm/main armhf r-cran-dplyr armhf 1.0.10-1 [1226 kB] Get: 233 http://deb.debian.org/debian bookworm/main armhf r-cran-purrr armhf 1.0.1-1 [504 kB] Get: 234 http://deb.debian.org/debian bookworm/main armhf r-cran-dbplyr all 2.3.0+dfsg-1 [1055 kB] Get: 235 http://deb.debian.org/debian bookworm/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB] Get: 236 http://deb.debian.org/debian bookworm/main armhf r-cran-filelock armhf 1.0.2-2 [24.0 kB] Get: 237 http://deb.debian.org/debian bookworm/main armhf r-bioc-biocfilecache all 2.6.1+dfsg-1 [296 kB] Get: 238 http://deb.debian.org/debian bookworm/main armhf r-bioc-biocio all 1.8.0+dfsg-1 [201 kB] Get: 239 http://deb.debian.org/debian bookworm/main armhf r-cran-formatr all 1.14-1 [152 kB] Get: 240 http://deb.debian.org/debian bookworm/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 241 http://deb.debian.org/debian bookworm/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 242 http://deb.debian.org/debian bookworm/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 243 http://deb.debian.org/debian bookworm/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 244 http://deb.debian.org/debian bookworm/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB] Get: 245 http://deb.debian.org/debian bookworm/main armhf r-cran-bh all 1.74.0-2 [5524 B] Get: 246 http://deb.debian.org/debian bookworm/main armhf r-cran-cpp11 all 0.4.3-1 [223 kB] Get: 247 http://deb.debian.org/debian bookworm/main armhf r-bioc-biocparallel armhf 1.32.5-1 [1331 kB] Get: 248 http://deb.debian.org/debian bookworm/main armhf r-cran-xml armhf 3.99-0.13-1 [1708 kB] Get: 249 http://deb.debian.org/debian bookworm/main armhf r-cran-ellipsis armhf 0.3.2-2 [34.7 kB] Get: 250 http://deb.debian.org/debian bookworm/main armhf r-cran-hms all 1.1.2-1 [104 kB] Get: 251 http://deb.debian.org/debian bookworm/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get: 252 http://deb.debian.org/debian bookworm/main armhf r-cran-progress all 1.2.2-2 [88.9 kB] Get: 253 http://deb.debian.org/debian bookworm/main armhf r-cran-stringi armhf 1.7.12-1 [832 kB] Get: 254 http://deb.debian.org/debian bookworm/main armhf r-cran-stringr all 1.5.0-1 [295 kB] Get: 255 http://deb.debian.org/debian bookworm/main armhf r-cran-digest armhf 0.6.31-1 [178 kB] Get: 256 http://deb.debian.org/debian bookworm/main armhf r-cran-xml2 armhf 1.3.3-1+b1 [276 kB] Get: 257 http://deb.debian.org/debian bookworm/main armhf r-bioc-biomart all 2.54.0+dfsg-1 [442 kB] Get: 258 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomicranges armhf 1.50.2+dfsg-1 [1794 kB] Get: 259 http://deb.debian.org/debian bookworm/main armhf r-bioc-rhtslib armhf 2.0.0+dfsg-1 [1199 kB] Get: 260 http://deb.debian.org/debian bookworm/main armhf r-bioc-rsamtools armhf 2.14.0-1 [3686 kB] Get: 261 http://deb.debian.org/debian bookworm/main armhf r-cran-matrixstats armhf 0.63.0-1 [457 kB] Get: 262 http://deb.debian.org/debian bookworm/main armhf r-bioc-matrixgenerics all 1.10.0-1 [302 kB] Get: 263 http://deb.debian.org/debian bookworm/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB] Get: 264 http://deb.debian.org/debian bookworm/main armhf r-cran-matrix armhf 1.5-3-1 [3758 kB] Get: 265 http://deb.debian.org/debian bookworm/main armhf r-bioc-delayedarray armhf 0.24.0+dfsg-1 [1936 kB] Get: 266 http://deb.debian.org/debian bookworm/main armhf r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB] Get: 267 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomicalignments armhf 1.34.0-1 [2109 kB] Get: 268 http://deb.debian.org/debian bookworm/main armhf r-cran-rjson armhf 0.2.21-1 [136 kB] Get: 269 http://deb.debian.org/debian bookworm/main armhf r-cran-yaml armhf 2.3.7-1 [94.2 kB] Get: 270 http://deb.debian.org/debian bookworm/main armhf r-cran-restfulr armhf 0.0.15-1 [382 kB] Get: 271 http://deb.debian.org/debian bookworm/main armhf r-bioc-rtracklayer armhf 1.58.0-1 [5075 kB] Get: 272 http://deb.debian.org/debian bookworm/main armhf r-bioc-bsgenome all 1.66.3-1 [6997 kB] Get: 273 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomicfeatures all 1.50.4+dfsg-1 [1676 kB] Get: 274 http://deb.debian.org/debian bookworm/main armhf r-bioc-variantannotation armhf 1.44.1-1 [3601 kB] Fetched 202 MB in 25s (8045 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.9-1_armhf.deb ... Unpacking openssl (3.0.9-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../005-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../008-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../011-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../019-dctrl-tools_2.24-3_armhf.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../024-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../027-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../029-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../030-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package zip. Preparing to unpack .../035-zip_3.0-13_armhf.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../036-unzip_6.0-28_armhf.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../037-libpaper1_1.1.29_armhf.deb ... Unpacking libpaper1:armhf (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../038-libpaper-utils_1.1.29_armhf.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../040-libblas3_3.11.0-2_armhf.deb ... Unpacking libblas3:armhf (3.11.0-2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../041-libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../042-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../043-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../044-libfreetype6_2.12.1+dfsg-5_armhf.deb ... Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../045-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. 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Setting up r-bioc-rsamtools (2.14.0-1) ... Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ... Setting up r-bioc-keggrest (1.38.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.60.0-1) ... Setting up r-bioc-biomart (2.54.0+dfsg-1) ... Setting up r-bioc-genomicalignments (1.34.0-1) ... Setting up r-bioc-rtracklayer (1.58.0-1) ... Setting up r-bioc-genomicfeatures (1.50.4+dfsg-1) ... Setting up r-bioc-bsgenome (1.66.3-1) ... Setting up r-bioc-variantannotation (1.44.1-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-bioc-genomicfiles-1.34.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-genomicfiles_1.34.0-1_source.changes dpkg-buildpackage: info: source package r-bioc-genomicfiles dpkg-buildpackage: info: source version 1.34.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-genomicfiles/ -O--buildsystem=R I: R Package: GenomicFiles Version: 1.34.0 I: Building using R version 4.2.2.20221110-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 22 Nov 2022 07:24:39 +0100 mkdir -p /build/r-bioc-genomicfiles-1.34.0/debian/r-bioc-genomicfiles/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-genomicfiles-1.34.0/debian/r-bioc-genomicfiles/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 22 Nov 2022 07:24:39 +0100'" * installing *source* package 'GenomicFiles' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicFiles) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. W: Ignoring specified R dependency: R (>= 3.1.0) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.11.2) I: Using r-bioc-matrixgenerics for Depends:MatrixGenerics I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.31.16) I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment I: Using r-bioc-biocparallel for Depends:BiocParallel (>= 1.1.0) I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.17.29) I: Using r-bioc-rtracklayer for Depends:rtracklayer (>= 1.25.3) I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-runit for Suggests:RUnit I: Using r-bioc-genefilter for Suggests:genefilter W: Cannot find a debian package for Suggests:deepSNV I: Using r-bioc-snpstats for Suggests:snpStats W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14 I: Using r-bioc-biostrings for Suggests:Biostrings W: Cannot find a debian package for Suggests:Homo.sapiens I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.7.7) I: Using r-bioc-iranges for Imports:IRanges I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.25) I: Using r-bioc-variantannotation for Imports:VariantAnnotation (>= 1.27.9) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb I: BioConductor API version: r-api-bioc-3.16 I: Use r-bioc-genomicfiles as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-genomicfiles' in '../r-bioc-genomicfiles_1.34.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-genomicfiles_1.34.0-1_armhf.buildinfo dpkg-genchanges --build=binary -O../r-bioc-genomicfiles_1.34.0-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25952 and its subdirectories I: Current time: Wed Jun 7 01:40:15 -12 2023 I: pbuilder-time-stamp: 1686145215 Wed Jun 7 13:40:45 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ff64a-armhf-rb.debian.net. Wed Jun 7 13:40:45 UTC 2023 I: Preparing to do remote build '2' on ff64a-armhf-rb.debian.net. Wed Jun 7 13:54:53 UTC 2023 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. Wed Jun 7 13:54:57 UTC 2023 I: r-bioc-genomicfiles_1.34.0-1_armhf.changes: Format: 1.8 Date: Tue, 22 Nov 2022 07:24:39 +0100 Source: r-bioc-genomicfiles Binary: r-bioc-genomicfiles Architecture: all Version: 1.34.0-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-genomicfiles - Distributed computing by file or by range Changes: r-bioc-genomicfiles (1.34.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) Checksums-Sha1: 2f706cdccad390853ba9b13cd754dd5601a9eafe 912036 r-bioc-genomicfiles_1.34.0-1_all.deb 41953df1cac0ad04ec3f243c1c17d4fe416db7f1 12457 r-bioc-genomicfiles_1.34.0-1_armhf.buildinfo Checksums-Sha256: 8a236508a10fb19ae1d89519d367d54d563ec2f29ad35c7d5ec2356d228a7ad8 912036 r-bioc-genomicfiles_1.34.0-1_all.deb b50714ba342500ac68b72af0568957329bc5a4bb1f6d5d765564f96ec8d1d2c9 12457 r-bioc-genomicfiles_1.34.0-1_armhf.buildinfo Files: 6bab1f0d885d13909725dace106dfce1 912036 gnu-r optional r-bioc-genomicfiles_1.34.0-1_all.deb 28b74eae04352897ca92fd36908d402b 12457 gnu-r optional r-bioc-genomicfiles_1.34.0-1_armhf.buildinfo Wed Jun 7 13:54:58 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.mHH0I2w5/r-bioc-genomicfiles_1.34.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.mHH0I2w5/r-bioc-genomicfiles_1.34.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.mHH0I2w5/r-bioc-genomicfiles_1.34.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.mHH0I2w5/b1/r-bioc-genomicfiles_1.34.0-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.mHH0I2w5/b2/r-bioc-genomicfiles_1.34.0-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.298s) 0.298s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed Jun 7 13:54:59 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Wed Jun 7 13:54:59 UTC 2023 I: r-bioc-genomicfiles from bookworm built successfully and reproducibly on armhf. Wed Jun 7 13:55:00 UTC 2023 I: Submitting .buildinfo files to external archives: Wed Jun 7 13:55:00 UTC 2023 I: Submitting 16K b1/r-bioc-genomicfiles_1.34.0-1_armhf.buildinfo.asc Wed Jun 7 13:55:02 UTC 2023 I: Submitting 16K b2/r-bioc-genomicfiles_1.34.0-1_armhf.buildinfo.asc Wed Jun 7 13:55:03 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jun 7 13:55:03 UTC 2023 I: Done submitting .buildinfo files. Wed Jun 7 13:55:03 UTC 2023 I: Removing signed r-bioc-genomicfiles_1.34.0-1_armhf.buildinfo.asc files: removed './b1/r-bioc-genomicfiles_1.34.0-1_armhf.buildinfo.asc' removed './b2/r-bioc-genomicfiles_1.34.0-1_armhf.buildinfo.asc'