Tue Jun 6 08:47:17 UTC 2023 I: starting to build r-bioc-dropletutils/bookworm/armhf on jenkins on '2023-06-06 08:47' Tue Jun 6 08:47:17 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_44/2173/console.log Tue Jun 6 08:47:17 UTC 2023 I: Downloading source for bookworm/r-bioc-dropletutils=1.18.1+ds-1 --2023-06-06 08:47:17-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-dropletutils/r-bioc-dropletutils_1.18.1%2bds-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2540 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-dropletutils_1.18.1+ds-1.dsc’ 0K .. 100% 221M=0s 2023-06-06 08:47:17 (221 MB/s) - ‘r-bioc-dropletutils_1.18.1+ds-1.dsc’ saved [2540/2540] Tue Jun 6 08:47:17 UTC 2023 I: r-bioc-dropletutils_1.18.1+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-dropletutils Binary: r-bioc-dropletutils Architecture: any Version: 1.18.1+ds-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/DropletUtils/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-dropletutils Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-dropletutils.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-cran-matrix, r-cran-rcpp, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-rhdf5, r-bioc-edger, r-cran-r.utils, r-cran-dqrng, r-bioc-beachmat, r-bioc-rhdf5lib, r-cran-bh, libhdf5-dev, libpcg-cpp-dev, r-bioc-scuttle Package-List: r-bioc-dropletutils deb gnu-r optional arch=any Checksums-Sha1: 899fc24bd8c7945a19ca66b2b66375749c9d718e 82008 r-bioc-dropletutils_1.18.1+ds.orig.tar.xz 116b579f142ea3a15760b2c2a99be8d8fb72a91a 3896 r-bioc-dropletutils_1.18.1+ds-1.debian.tar.xz Checksums-Sha256: 1a30bd432ae97c1ec0766b239b70caff4e4c52e4894b2ef9b6f2baf927442a1a 82008 r-bioc-dropletutils_1.18.1+ds.orig.tar.xz 97df71b2534886fcc6bac99b518243e268cac5f02724073db510e75c5f32f066 3896 r-bioc-dropletutils_1.18.1+ds-1.debian.tar.xz Files: 8af7c7c4a03422d33a81fa011c6b27d2 82008 r-bioc-dropletutils_1.18.1+ds.orig.tar.xz 3c2eefee01487d2ac8c866cce991e6eb 3896 r-bioc-dropletutils_1.18.1+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOI4bYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGfoQ/+JqojNyanxtBFEsOmyCkLua4Klnuh3585 I8Hc+dEfzoZ4lyDx2NICsUPevhkuAUpsYBuIitu6Nya4NxrpNg21XLeoI9iXdu01 93WJ8MrUZha/JUHf908TemTMzByNkKorEPfkmNOKTRTCIrbq0xSRKxcIUYZFKlLX bNgNs8vTsWat8NyNUYTsDsvHnNY1uuK3ZISxbxuRbafjE88QQBSqi5HWKN9M3PWA c77Y3WWGlWibbofaVSseimbf7nJAz1Ubtpg+/t/ZQ5p2N8GrHLAWyd1uOks3P8xF iGgEQvbG0dOtPF+rlIG/tmjcTb65yl7wO8/iQgDZFN7F1jFl847vr2w6L9OQR0qi gieuvTRUd4jT+sBPSBnDV1OLXIe0WCluJm09xFZ8FKbsrj217GKUjXSSryBV8wlO QclB+gVPBefX/1fJLy48zCHLIII40xCwqm85dJn0s78gu/CS1dEGPN+jpjlmLasv 2aI8lt+ntjQOYJWDwN38vWSP6n5J9etZ246VZ6ChuRvCph2O/p+zojoWBCbjREZa azBaowtqDAAoVxSnO2pzF2xA7UlhXQJHe8pCpOGWtFS/kE9Dt1JztUgbSDj1TB8N i20vpTlN9DYf6+O3Nt5HDXppYpKSyb3C5D12XPYMFclGOS/cVjVBLzV0CaCoyaqV T3TU3yVHuPc= =E82m -----END PGP SIGNATURE----- Tue Jun 6 08:47:17 UTC 2023 I: Checking whether the package is not for us Tue Jun 6 08:47:17 UTC 2023 I: Starting 1st build on remote node cbxi4pro0-armhf-rb.debian.net. Tue Jun 6 08:47:17 UTC 2023 I: Preparing to do remote build '1' on cbxi4pro0-armhf-rb.debian.net. Tue Jun 6 09:04:17 UTC 2023 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 5 20:47:32 -12 2023 I: pbuilder-time-stamp: 1686041252 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-dropletutils_1.18.1+ds-1.dsc] I: copying [./r-bioc-dropletutils_1.18.1+ds.orig.tar.xz] I: copying [./r-bioc-dropletutils_1.18.1+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 1 05:17:42 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-dropletutils_1.18.1+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-dropletutils in r-bioc-dropletutils-1.18.1+ds dpkg-source: info: unpacking r-bioc-dropletutils_1.18.1+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-dropletutils_1.18.1+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libhdf5.patch dpkg-source: info: applying skip-failing-test.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12249/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='3635e125083843ffb5967aecde0b7a44' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12249' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IHdXyYbg/pbuilderrc_sUtv --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IHdXyYbg/b1 --logfile b1/build.log r-bioc-dropletutils_1.18.1+ds-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4pro0 5.10.0-23-armmp #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/12249/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-cran-matrix, r-cran-rcpp, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-rhdf5, r-bioc-edger, r-cran-r.utils, r-cran-dqrng, r-bioc-beachmat, r-bioc-rhdf5lib, r-cran-bh, libhdf5-dev, libpcg-cpp-dev, r-bioc-scuttle dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-singlecellexperiment; however: Package r-bioc-singlecellexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedarray; however: Package r-bioc-delayedarray is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedmatrixstats; however: Package r-bioc-delayedmatrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-hdf5array; however: Package r-bioc-hdf5array is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-edger; however: Package r-bioc-edger is not installed. pbuilder-satisfydepends-dummy depends on r-cran-r.utils; however: Package r-cran-r.utils is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dqrng; however: Package r-cran-dqrng is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-beachmat; however: Package r-bioc-beachmat is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5lib; however: Package r-bioc-rhdf5lib is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bh; however: Package r-cran-bh is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libpcg-cpp-dev; however: Package libpcg-cpp-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-scuttle; however: Package r-bioc-scuttle is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-openssl-dev{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcg-cpp-dev{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libsnappy1v5{a} libssh2-1{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} littler{a} m4{a} man-db{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-beachmat{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocparallel{a} r-bioc-delayedarray{a} r-bioc-delayedmatrixstats{a} r-bioc-edger{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-hdf5array{a} r-bioc-iranges{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-s4vectors{a} r-bioc-scuttle{a} r-bioc-singlecellexperiment{a} r-bioc-sparsematrixstats{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-bh{a} r-cran-bitops{a} r-cran-codetools{a} r-cran-cpp11{a} r-cran-dqrng{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-littler{a} r-cran-locfit{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-pkgkitten{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-sitmo{a} r-cran-snow{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-biocstyle r-cran-brio r-cran-decor r-cran-knitr r-cran-mockery r-cran-progress r-cran-rmarkdown r-cran-runit r-cran-survival r-cran-testit r-cran-testthat r-cran-tibble r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 242 newly installed, 0 to remove and 0 not upgraded. Need to get 164 MB of archives. After unpacking 504 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf openssl armhf 3.0.9-1 [1381 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf ca-certificates all 20230311 [153 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 26 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf zip armhf 3.0-13 [218 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf unzip armhf 6.0-28 [152 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 40 http://deb.debian.org/debian bookworm/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libpixman-1-0 armhf 0.42.2-1 [465 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2 [292 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2 [695 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libcairo2 armhf 1.16.0-7 [493 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-10 [347 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf fontconfig armhf 2.14.1-4 [448 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libthai-data all 0.1.29-1 [176 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf libdatrie1 armhf 0.2.13-2+b1 [39.9 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf libthai0 armhf 0.1.29-1 [54.3 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf libpango-1.0-0 armhf 1.50.12+ds-1 [188 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libpangoft2-1.0-0 armhf 1.50.12+ds-1 [40.9 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libpangocairo-1.0-0 armhf 1.50.12+ds-1 [30.3 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.2 [242 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-6 [295 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libxft2 armhf 2.3.6-1 [53.8 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf libtk8.6 armhf 8.6.13-2 [689 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf r-base-core armhf 4.2.2.20221110-2 [25.6 MB] Get: 98 http://deb.debian.org/debian bookworm/main armhf libgfortran-12-dev armhf 12.2.0-14 [298 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf gfortran-12 armhf 12.2.0-14 [7633 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf gfortran armhf 4:12.2.0-3 [1424 B] Get: 101 http://deb.debian.org/debian bookworm/main armhf libblas-dev armhf 3.11.0-2 [115 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf liblapack-dev armhf 3.11.0-2 [1798 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf libncurses6 armhf 6.4-4 [81.1 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf libncurses-dev armhf 6.4-4 [311 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf libncurses5-dev armhf 6.4-4 [932 B] Get: 106 http://deb.debian.org/debian bookworm/main armhf libreadline-dev armhf 8.2-1.3 [136 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [260 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf libpcre2-16-0 armhf 10.42-1 [211 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf libpcre2-32-0 armhf 10.42-1 [203 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf libpcre2-posix3 armhf 10.42-1 [55.0 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf libpcre2-dev armhf 10.42-1 [666 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf libpcre3 armhf 2:8.39-15 [315 kB] Get: 114 http://deb.debian.org/debian bookworm/main armhf libpcre16-3 armhf 2:8.39-15 [235 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf libpcre32-3 armhf 2:8.39-15 [226 kB] Get: 116 http://deb.debian.org/debian bookworm/main armhf libpcrecpp0v5 armhf 2:8.39-15 [141 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf libpcre3-dev armhf 2:8.39-15 [591 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf libpng-dev armhf 1.6.39-2 [343 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf libbz2-dev armhf 1.0.8-5+b1 [28.1 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf liblzma-dev armhf 5.4.1-0.2 [248 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf icu-devtools armhf 72.1-3 [183 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf libicu-dev armhf 72.1-3 [10.1 MB] Get: 124 http://deb.debian.org/debian bookworm/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf xauth armhf 1:1.1.2-1 [33.2 kB] Get: 126 http://deb.debian.org/debian bookworm/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf pkgconf-bin armhf 1.8.1-1 [28.5 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf pkgconf armhf 1.8.1-1 [25.9 kB] Get: 129 http://deb.debian.org/debian bookworm/main armhf pkg-config armhf 1.8.1-1 [13.7 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf r-base-dev all 4.2.2.20221110-2 [4492 B] Get: 131 http://deb.debian.org/debian bookworm/main armhf libfile-which-perl all 1.27-2 [15.1 kB] Get: 132 http://deb.debian.org/debian bookworm/main armhf libswitch-perl all 2.17-3 [20.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf libclone-perl armhf 0.46-1 [13.1 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf libhttp-date-perl all 6.05-2 [10.5 kB] Get: 137 http://deb.debian.org/debian bookworm/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 138 http://deb.debian.org/debian bookworm/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 140 http://deb.debian.org/debian bookworm/main armhf liburi-perl all 5.17-1 [90.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main armhf libhttp-message-perl all 6.44-1 [81.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main armhf libparams-util-perl armhf 1.102-2+b1 [23.8 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf libsub-install-perl all 0.929-1 [10.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main armhf libdata-optlist-perl all 0.113-1 [10.6 kB] Get: 145 http://deb.debian.org/debian bookworm/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB] Get: 146 http://deb.debian.org/debian bookworm/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.7 kB] Get: 148 http://deb.debian.org/debian bookworm/main armhf libparams-classify-perl armhf 0.015-2+b1 [21.9 kB] Get: 149 http://deb.debian.org/debian bookworm/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 150 http://deb.debian.org/debian bookworm/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 151 http://deb.debian.org/debian bookworm/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 152 http://deb.debian.org/debian bookworm/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 153 http://deb.debian.org/debian bookworm/main armhf libclass-load-perl all 0.25-2 [15.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.7 kB] Get: 155 http://deb.debian.org/debian bookworm/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 156 http://deb.debian.org/debian bookworm/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 157 http://deb.debian.org/debian bookworm/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 158 http://deb.debian.org/debian bookworm/main armhf libclass-c3-perl all 0.35-2 [21.0 kB] Get: 159 http://deb.debian.org/debian bookworm/main armhf libmro-compat-perl all 0.15-2 [11.8 kB] Get: 160 http://deb.debian.org/debian bookworm/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 161 http://deb.debian.org/debian bookworm/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 162 http://deb.debian.org/debian bookworm/main armhf libsub-exporter-perl all 0.989-1 [50.5 kB] Get: 163 http://deb.debian.org/debian bookworm/main armhf libeval-closure-perl all 0.14-3 [11.2 kB] Get: 164 http://deb.debian.org/debian bookworm/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 165 http://deb.debian.org/debian bookworm/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 166 http://deb.debian.org/debian bookworm/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 167 http://deb.debian.org/debian bookworm/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB] Get: 168 http://deb.debian.org/debian bookworm/main armhf libmoose-perl armhf 2.2203-1 [793 kB] Get: 169 http://deb.debian.org/debian bookworm/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.5 kB] Get: 170 http://deb.debian.org/debian bookworm/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get: 171 http://deb.debian.org/debian bookworm/main armhf libsub-identify-perl armhf 0.14-3 [10.5 kB] Get: 172 http://deb.debian.org/debian bookworm/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB] Get: 173 http://deb.debian.org/debian bookworm/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 174 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-10 [343 kB] Get: 175 http://deb.debian.org/debian bookworm/main armhf libwww-curl-perl armhf 4.17-10 [56.1 kB] Get: 176 http://deb.debian.org/debian bookworm/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 177 http://deb.debian.org/debian bookworm/main armhf dh-r all 20230121 [37.9 kB] Get: 178 http://deb.debian.org/debian bookworm/main armhf hdf5-helpers armhf 1.10.8+repack1-1 [27.9 kB] Get: 179 http://deb.debian.org/debian bookworm/main armhf libaec0 armhf 1.0.6-1+b1 [19.8 kB] Get: 180 http://deb.debian.org/debian bookworm/main armhf libsz2 armhf 1.0.6-1+b1 [7864 B] Get: 181 http://deb.debian.org/debian bookworm/main armhf libaec-dev armhf 1.0.6-1+b1 [18.1 kB] Get: 182 http://deb.debian.org/debian bookworm/main armhf libsnappy1v5 armhf 1.1.9-3 [23.8 kB] Get: 183 http://deb.debian.org/debian bookworm/main armhf libblosc1 armhf 1.21.3+ds-1 [36.8 kB] Get: 184 http://deb.debian.org/debian bookworm/main armhf libboost1.74-dev armhf 1.74.0+ds1-21 [9508 kB] Get: 185 http://deb.debian.org/debian bookworm/main armhf libboost-dev armhf 1.74.0.3 [4548 B] Get: 186 http://deb.debian.org/debian bookworm/main armhf libcurl4-openssl-dev armhf 7.88.1-10 [453 kB] Get: 187 http://deb.debian.org/debian bookworm/main armhf libhdf5-103-1 armhf 1.10.8+repack1-1 [1183 kB] Get: 188 http://deb.debian.org/debian bookworm/main armhf libhdf5-cpp-103-1 armhf 1.10.8+repack1-1 [119 kB] Get: 189 http://deb.debian.org/debian bookworm/main armhf libhdf5-fortran-102 armhf 1.10.8+repack1-1 [82.1 kB] Get: 190 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-100 armhf 1.10.8+repack1-1 [65.3 kB] Get: 191 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-fortran-100 armhf 1.10.8+repack1-1 [38.8 kB] Get: 192 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-cpp-100 armhf 1.10.8+repack1-1 [25.2 kB] Get: 193 http://deb.debian.org/debian bookworm/main armhf libssl-dev armhf 3.0.9-1 [2133 kB] Get: 194 http://deb.debian.org/debian bookworm/main armhf libhdf5-dev armhf 1.10.8+repack1-1 [2573 kB] Get: 195 http://deb.debian.org/debian bookworm/main armhf libpcg-cpp-dev all 0.98.1-2 [21.3 kB] Get: 196 http://deb.debian.org/debian bookworm/main armhf r-cran-littler armhf 0.3.17-1 [93.4 kB] Get: 197 http://deb.debian.org/debian bookworm/main armhf littler all 0.3.17-1 [14.4 kB] Get: 198 http://deb.debian.org/debian bookworm/main armhf r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get: 199 http://deb.debian.org/debian bookworm/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB] Get: 200 http://deb.debian.org/debian bookworm/main armhf r-cran-matrix armhf 1.5-3-1 [3758 kB] Get: 201 http://deb.debian.org/debian bookworm/main armhf r-cran-matrixstats armhf 0.63.0-1 [457 kB] Get: 202 http://deb.debian.org/debian bookworm/main armhf r-bioc-matrixgenerics all 1.10.0-1 [302 kB] Get: 203 http://deb.debian.org/debian bookworm/main armhf r-bioc-s4vectors armhf 0.36.1-1 [2020 kB] Get: 204 http://deb.debian.org/debian bookworm/main armhf r-bioc-iranges armhf 2.32.0-1 [2215 kB] Get: 205 http://deb.debian.org/debian bookworm/main armhf r-bioc-delayedarray armhf 0.24.0+dfsg-1 [1936 kB] Get: 206 http://deb.debian.org/debian bookworm/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get: 207 http://deb.debian.org/debian bookworm/main armhf r-cran-rcpp armhf 1.0.10-1 [2042 kB] Get: 208 http://deb.debian.org/debian bookworm/main armhf r-bioc-beachmat armhf 2.14.0+ds-1 [186 kB] Get: 209 http://deb.debian.org/debian bookworm/main armhf r-bioc-biobase armhf 2.58.0-2 [2111 kB] Get: 210 http://deb.debian.org/debian bookworm/main armhf r-cran-formatr all 1.14-1 [152 kB] Get: 211 http://deb.debian.org/debian bookworm/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 212 http://deb.debian.org/debian bookworm/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 213 http://deb.debian.org/debian bookworm/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 214 http://deb.debian.org/debian bookworm/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 215 http://deb.debian.org/debian bookworm/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB] Get: 216 http://deb.debian.org/debian bookworm/main armhf r-cran-bh all 1.74.0-2 [5524 B] Get: 217 http://deb.debian.org/debian bookworm/main armhf r-cran-cpp11 all 0.4.3-1 [223 kB] Get: 218 http://deb.debian.org/debian bookworm/main armhf r-bioc-biocparallel armhf 1.32.5-1 [1331 kB] Get: 219 http://deb.debian.org/debian bookworm/main armhf r-bioc-sparsematrixstats armhf 1.10.0+dfsg-1 [842 kB] Get: 220 http://deb.debian.org/debian bookworm/main armhf r-bioc-delayedmatrixstats all 1.20.0+ds-1 [430 kB] Get: 221 http://deb.debian.org/debian bookworm/main armhf r-bioc-limma armhf 3.54.1+dfsg-1 [1768 kB] Get: 222 http://deb.debian.org/debian bookworm/main armhf r-cran-locfit armhf 1.5-9.7-1 [481 kB] Get: 223 http://deb.debian.org/debian bookworm/main armhf r-bioc-edger armhf 3.40.2+dfsg-1 [1081 kB] Get: 224 http://deb.debian.org/debian bookworm/main armhf r-cran-bitops armhf 1.0-7-1 [30.0 kB] Get: 225 http://deb.debian.org/debian bookworm/main armhf r-cran-rcurl armhf 1.98-1.10+dfsg-1 [780 kB] Get: 226 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB] Get: 227 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomeinfodb all 1.34.9-1 [3938 kB] Get: 228 http://deb.debian.org/debian bookworm/main armhf r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B] Get: 229 http://deb.debian.org/debian bookworm/main armhf r-bioc-xvector armhf 0.38.0-1 [612 kB] Get: 230 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomicranges armhf 1.50.2+dfsg-1 [1794 kB] Get: 231 http://deb.debian.org/debian bookworm/main armhf r-bioc-rhdf5lib armhf 1.20.0+dfsg-1 [102 kB] Get: 232 http://deb.debian.org/debian bookworm/main armhf r-bioc-rhdf5filters armhf 1.10.0+dfsg-1 [120 kB] Get: 233 http://deb.debian.org/debian bookworm/main armhf r-bioc-rhdf5 armhf 2.42.0+dfsg-1 [788 kB] Get: 234 http://deb.debian.org/debian bookworm/main armhf r-bioc-hdf5array armhf 1.26.0-1 [8743 kB] Get: 235 http://deb.debian.org/debian bookworm/main armhf r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB] Get: 236 http://deb.debian.org/debian bookworm/main armhf r-bioc-singlecellexperiment all 1.20.0+ds-1 [826 kB] Get: 237 http://deb.debian.org/debian bookworm/main armhf r-bioc-scuttle armhf 1.8.4+dfsg-1 [404 kB] Get: 238 http://deb.debian.org/debian bookworm/main armhf r-cran-sitmo armhf 2.0.2-1+b1 [126 kB] Get: 239 http://deb.debian.org/debian bookworm/main armhf r-cran-dqrng armhf 0.3.0+dfsg-1+b1 [116 kB] Get: 240 http://deb.debian.org/debian bookworm/main armhf r-cran-r.methodss3 all 1.8.2-1 [84.5 kB] Get: 241 http://deb.debian.org/debian bookworm/main armhf r-cran-r.oo all 1.25.0-1 [959 kB] Get: 242 http://deb.debian.org/debian bookworm/main armhf r-cran-r.utils all 2.12.2-1 [1391 kB] Fetched 164 MB in 19s (8581 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.9-1_armhf.deb ... Unpacking openssl (3.0.9-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../005-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../008-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../011-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../019-dctrl-tools_2.24-3_armhf.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../024-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../027-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../029-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../030-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package zip. Preparing to unpack .../035-zip_3.0-13_armhf.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../036-unzip_6.0-28_armhf.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../037-libpaper1_1.1.29_armhf.deb ... Unpacking libpaper1:armhf (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../038-libpaper-utils_1.1.29_armhf.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../040-libblas3_3.11.0-2_armhf.deb ... Unpacking libblas3:armhf (3.11.0-2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../041-libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../042-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../043-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../044-libfreetype6_2.12.1+dfsg-5_armhf.deb ... Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../045-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../046-fontconfig-config_2.14.1-4_armhf.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../047-libfontconfig1_2.14.1-4_armhf.deb ... Unpacking libfontconfig1:armhf (2.14.1-4) ... Selecting previously unselected package libpixman-1-0:armhf. Preparing to unpack .../048-libpixman-1-0_0.42.2-1_armhf.deb ... Unpacking libpixman-1-0:armhf (0.42.2-1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../049-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../050-libbsd0_0.11.7-2_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-2) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../051-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../052-libxcb1_1.15-1_armhf.deb ... Unpacking libxcb1:armhf (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../053-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../054-libx11-6_2%3a1.8.4-2_armhf.deb ... Unpacking libx11-6:armhf (2:1.8.4-2) ... Selecting previously unselected package libxcb-render0:armhf. Preparing to unpack .../055-libxcb-render0_1.15-1_armhf.deb ... Unpacking libxcb-render0:armhf (1.15-1) ... Selecting previously unselected package libxcb-shm0:armhf. Preparing to unpack .../056-libxcb-shm0_1.15-1_armhf.deb ... Unpacking libxcb-shm0:armhf (1.15-1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../057-libxext6_2%3a1.3.4-1+b1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b1) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../058-libxrender1_1%3a0.9.10-1.1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:armhf. Preparing to unpack .../059-libcairo2_1.16.0-7_armhf.deb ... Unpacking libcairo2:armhf (1.16.0-7) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../060-libsasl2-modules-db_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../061-libsasl2-2_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../062-libldap-2.5-0_2.5.13+dfsg-5_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../063-libnghttp2-14_1.52.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.52.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../064-libpsl5_0.21.2-1_armhf.deb ... Unpacking libpsl5:armhf (0.21.2-1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../065-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../066-libssh2-1_1.10.0-3+b1_armhf.deb ... Unpacking libssh2-1:armhf (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../067-libcurl4_7.88.1-10_armhf.deb ... Unpacking libcurl4:armhf (7.88.1-10) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../068-libglib2.0-0_2.74.6-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.74.6-2) ... Selecting previously unselected package libjpeg62-turbo:armhf. 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Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libpcre16-3:armhf (2:8.39-15) ... Setting up hdf5-helpers (1.10.8+repack1-1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libdatrie1:armhf (0.2.13-2+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libclone-perl:armhf (0.46-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libglib2.0-0:armhf (2.74.6-2) ... No schema files found: doing nothing. Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up libnghttp2-14:armhf (1.52.0-1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.44-3) ... Setting up libjbig0:armhf (2.1-6.1) ... Setting up libpcre2-16-0:armhf (10.42-1) ... Setting up libaec0:armhf (1.0.6-1+b1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libsnappy1v5:armhf (1.1.9-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Setting up libpcre3:armhf (2:8.39-15) ... Setting up zip (3.0-13) ... Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:armhf (10.42-1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-1) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.4-4) ... Setting up libfribidi0:armhf (1.0.8-2.1) ... Setting up libssl-dev:armhf (3.0.9-1) ... Setting up libpng16-16:armhf (1.6.39-2) ... Setting up libpcre32-3:armhf (2:8.39-15) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ... Setting up icu-devtools (72.1-3) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-10) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:armhf (1.2.4-0.2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up liblzma-dev:armhf (5.4.1-0.2) ... Setting up libsub-name-perl:armhf (0.26-2+b1) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up libpcre2-posix3:armhf (10.42-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:armhf (4.5.0-6) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libblosc1:armhf (1.21.3+ds-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up libpcg-cpp-dev (0.98.1-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libboost-dev:armhf (1.74.0.3) ... Setting up openssl (3.0.9-1) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libicu-dev:armhf (72.1-3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.17-1) ... Setting up libblas-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsz2:armhf (1.0.6-1+b1) ... Setting up dctrl-tools (2.24-3) ... Setting up libbz2-dev:armhf (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpcrecpp0v5:armhf (2:8.39-15) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up r-cran-bh (1.74.0-2) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libncurses-dev:armhf (6.4-4) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libpcre2-dev:armhf (10.42-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up libpcre3-dev:armhf (2:8.39-15) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up libpng-dev:armhf (1.6.39-2) ... Setting up libaec-dev:armhf (1.0.6-1+b1) ... Setting up libjpeg-dev:armhf (1:2.1.5-2) ... Setting up libgfortran-12-dev:armhf (12.2.0-14) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:armhf (8.2-1.3) ... Setting up libdevel-callchecker-perl:armhf (0.008-2) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up pkgconf:armhf (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up gfortran-12 (12.2.0-14) ... Setting up libfreetype6:armhf (2.12.1+dfsg-5) ... Setting up liblapack-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.113-1) ... Setting up pkg-config:armhf (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libncurses5-dev:armhf (6.4-4) ... Setting up libcurl4:armhf (7.88.1-10) ... Setting up libx11-6:armhf (2:1.8.4-2) ... Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Setting up libfontconfig1:armhf (2.14.1-4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libxmuu1:armhf (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:armhf (0.015-2+b1) ... Setting up libpango-1.0-0:armhf (1.50.12+ds-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:armhf (7.88.1-10) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.16.0-7) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libcurl4-openssl-dev:armhf (7.88.1-10) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:armhf (1:1.2.1-1.1) ... Setting up libhdf5-103-1:armhf (1.10.8+repack1-1) ... Setting up xauth (1:1.1.2-1) ... Setting up libhdf5-cpp-103-1:armhf (1.10.8+repack1-1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:armhf (1.50.12+ds-1) ... Setting up libhdf5-hl-100:armhf (1.10.8+repack1-1) ... Setting up libxft2:armhf (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:armhf (8.6.13-2) ... Setting up libwww-curl-perl:armhf (4.17-10) ... Setting up debhelper (13.11.4) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up libhdf5-hl-cpp-100:armhf (1.10.8+repack1-1) ... Setting up r-base-core (4.2.2.20221110-2) ... Creating config file /etc/R/Renviron with new version Setting up libhdf5-fortran-102:armhf (1.10.8+repack1-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-formatr (1.14-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-locfit (1.5-9.7-1) ... Setting up libhdf5-hl-fortran-100:armhf (1.10.8+repack1-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-bioc-genomeinfodbdata (1.2.9-1) ... Setting up r-cran-littler (0.3.17-1) ... Setting up r-cran-rcpp (1.0.10-1) ... Setting up r-cran-codetools (0.2-19-1) ... Setting up r-bioc-biocgenerics (0.44.0-2) ... Setting up r-cran-matrixstats (0.63.0-1) ... Setting up r-base-dev (4.2.2.20221110-2) ... Setting up littler (0.3.17-1) ... Setting up r-bioc-matrixgenerics (1.10.0-1) ... Setting up libmoose-perl:armhf (2.2203-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ... Setting up r-cran-r.methodss3 (1.8.2-1) ... Setting up r-bioc-biobase (2.58.0-2) ... Setting up r-cran-cpp11 (0.4.3-1) ... Setting up r-cran-sitmo (2.0.2-1+b1) ... Setting up r-bioc-s4vectors (0.36.1-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up libhdf5-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-limma (3.54.1+dfsg-1) ... Setting up r-cran-matrix (1.5-3-1) ... Setting up r-bioc-iranges (2.32.0-1) ... Setting up r-cran-dqrng (0.3.0+dfsg-1+b1) ... Setting up r-cran-rcurl (1.98-1.10+dfsg-1) ... Setting up r-bioc-sparsematrixstats (1.10.0+dfsg-1) ... Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ... Setting up r-bioc-biocparallel (1.32.5-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-edger (3.40.2+dfsg-1) ... Setting up r-bioc-rhdf5lib (1.20.0+dfsg-1) ... Setting up r-bioc-delayedmatrixstats (1.20.0+ds-1) ... Setting up r-cran-r.oo (1.25.0-1) ... Setting up r-bioc-rhdf5filters (1.10.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.34.9-1) ... Setting up r-bioc-beachmat (2.14.0+ds-1) ... Setting up r-bioc-xvector (0.38.0-1) ... Setting up dh-r (20230121) ... Setting up r-cran-r.utils (2.12.2-1) ... Setting up r-bioc-genomicranges (1.50.2+dfsg-1) ... Setting up r-bioc-rhdf5 (2.42.0+dfsg-1) ... Setting up r-bioc-hdf5array (1.26.0-1) ... Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ... Setting up r-bioc-singlecellexperiment (1.20.0+ds-1) ... Setting up r-bioc-scuttle (1.8.4+dfsg-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-bioc-dropletutils-1.18.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-dropletutils_1.18.1+ds-1_source.changes dpkg-buildpackage: info: source package r-bioc-dropletutils dpkg-buildpackage: info: source version 1.18.1+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-dropletutils/ -O--buildsystem=R I: R Package: DropletUtils Version: 1.18.1 I: Building using R version 4.2.2.20221110-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 01 Dec 2022 18:01:02 +0100 mkdir -p /build/r-bioc-dropletutils-1.18.1\+ds/debian/r-bioc-dropletutils/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-dropletutils-1.18.1\+ds/debian/r-bioc-dropletutils/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 01 Dec 2022 18:01:02 +0100'" * installing *source* package 'DropletUtils' ... ** using staged installation ** libs make[1]: Entering directory '/build/r-bioc-dropletutils-1.18.1+ds/src' g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c downsample_run.cpp -o downsample_run.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c encode_sequences.cpp -o encode_sequences.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c find_chimeric.cpp -o find_chimeric.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c find_swapped.cpp -o find_swapped.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c get_cell_barcodes.cpp -o get_cell_barcodes.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c group_cells.cpp -o group_cells.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hashed_deltas.cpp -o hashed_deltas.o In file included from /usr/include/c++/12/bits/stl_algo.h:60, from /usr/include/c++/12/algorithm:61, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:64, from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27, from hashed_deltas.cpp:1: /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter > >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter > >]': /usr/include/c++/12/bits/stl_algo.h:1895:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1895 | __partial_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1895:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_algo.h:1895:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In function 'void std::partial_sort(_RAIter, _RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = greater >]', inlined from 'double hash_ambient_adjuster::correct(const double*)' at hashed_deltas.cpp:49:30: /usr/include/c++/12/bits/stl_algo.h:4710:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 4710 | std::__partial_sort(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 4711 | __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::partial_sort(_RAIter, _RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = greater >]', inlined from 'double hash_ambient_adjuster::correct(const double*)' at hashed_deltas.cpp:58:30: /usr/include/c++/12/bits/stl_algo.h:4710:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 4710 | std::__partial_sort(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 4711 | __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::partial_sort(_RAIter, _RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = greater >]', inlined from 'double hash_ambient_adjuster::correct(const double*)' at hashed_deltas.cpp:89:26: /usr/include/c++/12/bits/stl_algo.h:4710:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 4710 | std::__partial_sort(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 4711 | __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c montecarlo_pval.cpp -o montecarlo_pval.o In file included from /usr/include/c++/12/vector:70, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60, from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27, from montecarlo_pval.cpp:1: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'Rcpp::IntegerVector montecarlo_pval(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::NumericVector, int, double, Rcpp::List, Rcpp::IntegerVector)' at montecarlo_pval.cpp:49:30: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'void boost::random::detail::real_alias_table::init_empty() [with IntType = int; WeightType = double]' at /usr/include/boost/random/discrete_distribution.hpp:153:31, inlined from 'void boost::random::discrete_distribution::init(Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator >; IntType = int; WeightType = double]' at /usr/include/boost/random/discrete_distribution.hpp:622:29, inlined from 'boost::random::discrete_distribution::discrete_distribution(Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator >; IntType = int; WeightType = double]' at /usr/include/boost/random/discrete_distribution.hpp:361:13, inlined from 'Rcpp::IntegerVector montecarlo_pval(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::NumericVector, int, double, Rcpp::List, Rcpp::IntegerVector)' at montecarlo_pval.cpp:68:82: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void boost::random::discrete_distribution::init(Iter, Iter, std::forward_iterator_tag) [with Iter = __gnu_cxx::__normal_iterator >; IntType = int; WeightType = double]' at /usr/include/boost/random/discrete_distribution.hpp:587:40, inlined from 'void boost::random::discrete_distribution::init(Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator >; IntType = int; WeightType = double]' at /usr/include/boost/random/discrete_distribution.hpp:625:17, inlined from 'boost::random::discrete_distribution::discrete_distribution(Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator >; IntType = int; WeightType = double]' at /usr/include/boost/random/discrete_distribution.hpp:361:13, inlined from 'Rcpp::IntegerVector montecarlo_pval(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::NumericVector, int, double, Rcpp::List, Rcpp::IntegerVector)' at montecarlo_pval.cpp:68:82: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void boost::random::discrete_distribution::init(Iter, Iter, std::forward_iterator_tag) [with Iter = __gnu_cxx::__normal_iterator >; IntType = int; WeightType = double]' at /usr/include/boost/random/discrete_distribution.hpp:589:40, inlined from 'void boost::random::discrete_distribution::init(Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator >; IntType = int; WeightType = double]' at /usr/include/boost/random/discrete_distribution.hpp:625:17, inlined from 'boost::random::discrete_distribution::discrete_distribution(Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator >; IntType = int; WeightType = double]' at /usr/include/boost/random/discrete_distribution.hpp:361:13, inlined from 'Rcpp::IntegerVector montecarlo_pval(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::NumericVector, int, double, Rcpp::List, Rcpp::IntegerVector)' at montecarlo_pval.cpp:68:82: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rand_custom.cpp -o rand_custom.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.cpp -o utils.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DropletUtils.so RcppExports.o downsample_run.o encode_sequences.o find_chimeric.o find_swapped.o get_cell_barcodes.o group_cells.o hashed_deltas.o montecarlo_pval.o rand_custom.o utils.o /usr/lib/R/site-library/Rhdf5lib/libs/Rhdf5lib.so -L/usr/lib/arm-linux-gnueabihf/hdf5/serial/ -lhdf5 -lhdf5_cpp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-bioc-dropletutils-1.18.1+ds/src' make[1]: Entering directory '/build/r-bioc-dropletutils-1.18.1+ds/src' make[1]: Leaving directory '/build/r-bioc-dropletutils-1.18.1+ds/src' installing to /build/r-bioc-dropletutils-1.18.1+ds/debian/r-bioc-dropletutils/usr/lib/R/site-library/00LOCK-r-bioc-dropletutils-1.18.1+ds/00new/DropletUtils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DropletUtils) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. I: Using r-bioc-singlecellexperiment for Depends:SingleCellExperiment I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-knitr for Suggests:knitr I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-jsonlite for Suggests:jsonlite W: Cannot find a debian package for Suggests:DropletTestFiles I: Using r-cran-matrix for Imports:Matrix I: Using r-cran-rcpp for Imports:Rcpp I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-iranges for Imports:IRanges I: Using r-bioc-genomicranges for Imports:GenomicRanges I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment I: Using r-bioc-biocparallel for Imports:BiocParallel I: Using r-bioc-delayedarray for Imports:DelayedArray I: Using r-bioc-delayedmatrixstats for Imports:DelayedMatrixStats I: Using r-bioc-hdf5array for Imports:HDF5Array I: Using r-bioc-rhdf5 for Imports:rhdf5 I: Using r-bioc-edger for Imports:edgeR I: Using r-cran-r.utils for Imports:R.utils I: Using r-cran-dqrng for Imports:dqrng I: Using r-bioc-beachmat for Imports:beachmat I: Using r-bioc-scuttle for Imports:scuttle I: Using r-cran-rcpp for LinkingTo:Rcpp I: Using r-bioc-beachmat for LinkingTo:beachmat I: Using r-bioc-rhdf5lib for LinkingTo:Rhdf5lib I: Using r-cran-bh for LinkingTo:BH I: Using r-cran-dqrng for LinkingTo:dqrng I: Using r-bioc-scuttle for LinkingTo:scuttle I: BioConductor API version: r-api-bioc-3.16 I: Use r-bioc-dropletutils as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-dropletutils-dbgsym' in '../r-bioc-dropletutils-dbgsym_1.18.1+ds-1_armhf.deb'. dpkg-deb: building package 'r-bioc-dropletutils' in '../r-bioc-dropletutils_1.18.1+ds-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-dropletutils_1.18.1+ds-1_armhf.buildinfo dpkg-genchanges --build=binary -O../r-bioc-dropletutils_1.18.1+ds-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12249 and its subdirectories I: Current time: Mon Jun 5 21:04:05 -12 2023 I: pbuilder-time-stamp: 1686042245 Tue Jun 6 09:04:19 UTC 2023 I: 1st build successful. Starting 2nd build on remote node jtx1c-armhf-rb.debian.net. Tue Jun 6 09:04:19 UTC 2023 I: Preparing to do remote build '2' on jtx1c-armhf-rb.debian.net. Tue Jun 6 09:11:26 UTC 2023 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net. Tue Jun 6 09:11:29 UTC 2023 I: r-bioc-dropletutils_1.18.1+ds-1_armhf.changes: Format: 1.8 Date: Thu, 01 Dec 2022 18:01:02 +0100 Source: r-bioc-dropletutils Binary: r-bioc-dropletutils r-bioc-dropletutils-dbgsym Architecture: armhf Version: 1.18.1+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-dropletutils - BioConductor utilities for handling single-cell droplet data Changes: r-bioc-dropletutils (1.18.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version Checksums-Sha1: db8b9d236e8385feafe2a43863118d0fbb085c98 1646320 r-bioc-dropletutils-dbgsym_1.18.1+ds-1_armhf.deb 826ece201a4009f64f98642279b78c737d082d3b 11956 r-bioc-dropletutils_1.18.1+ds-1_armhf.buildinfo fda8d9238584b77808b8d8c85f6f6becbfad0b04 374268 r-bioc-dropletutils_1.18.1+ds-1_armhf.deb Checksums-Sha256: a923d8d827489349b0fcf760a84bd96313d16447ff81a9b1c14b2cbcf5f430ae 1646320 r-bioc-dropletutils-dbgsym_1.18.1+ds-1_armhf.deb a7d8ef8b5084775615b34d3a598973f53703e91c2f00d5d54335f99618bfeccf 11956 r-bioc-dropletutils_1.18.1+ds-1_armhf.buildinfo 62da89be8d3fd0eedbfe52c37c931438dcac7a9fd5158e7c7595336ddb69a152 374268 r-bioc-dropletutils_1.18.1+ds-1_armhf.deb Files: 68da5d5f70baac9c9ac3b8d8bc837fd4 1646320 debug optional r-bioc-dropletutils-dbgsym_1.18.1+ds-1_armhf.deb 266a711cae6e08e4317e6b532a7b3e66 11956 gnu-r optional r-bioc-dropletutils_1.18.1+ds-1_armhf.buildinfo 33c458ae931e18337c131d2e38befcf4 374268 gnu-r optional r-bioc-dropletutils_1.18.1+ds-1_armhf.deb Tue Jun 6 09:11:30 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IHdXyYbg/r-bioc-dropletutils_1.18.1+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IHdXyYbg/r-bioc-dropletutils_1.18.1+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IHdXyYbg/r-bioc-dropletutils_1.18.1+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IHdXyYbg/b1/r-bioc-dropletutils_1.18.1+ds-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.IHdXyYbg/b2/r-bioc-dropletutils_1.18.1+ds-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.330s) 0.330s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.036s) 0.036s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue Jun 6 09:11:31 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Tue Jun 6 09:11:31 UTC 2023 I: r-bioc-dropletutils from bookworm built successfully and reproducibly on armhf. Tue Jun 6 09:11:32 UTC 2023 I: Submitting .buildinfo files to external archives: Tue Jun 6 09:11:32 UTC 2023 I: Submitting 16K b1/r-bioc-dropletutils_1.18.1+ds-1_armhf.buildinfo.asc Tue Jun 6 09:11:33 UTC 2023 I: Submitting 16K b2/r-bioc-dropletutils_1.18.1+ds-1_armhf.buildinfo.asc Tue Jun 6 09:11:35 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jun 6 09:11:35 UTC 2023 I: Done submitting .buildinfo files. Tue Jun 6 09:11:35 UTC 2023 I: Removing signed r-bioc-dropletutils_1.18.1+ds-1_armhf.buildinfo.asc files: removed './b1/r-bioc-dropletutils_1.18.1+ds-1_armhf.buildinfo.asc' removed './b2/r-bioc-dropletutils_1.18.1+ds-1_armhf.buildinfo.asc'