Thu Jun 1 20:37:25 UTC 2023 I: starting to build python-pyfaidx/bookworm/armhf on jenkins on '2023-06-01 20:36' Thu Jun 1 20:37:25 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_8/9722/console.log Thu Jun 1 20:37:25 UTC 2023 I: Downloading source for bookworm/python-pyfaidx=0.7.1-2 --2023-06-01 20:37:26-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-pyfaidx/python-pyfaidx_0.7.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2514 (2.5K) [text/prs.lines.tag] Saving to: ‘python-pyfaidx_0.7.1-2.dsc’ 0K .. 100% 201M=0s 2023-06-01 20:37:26 (201 MB/s) - ‘python-pyfaidx_0.7.1-2.dsc’ saved [2514/2514] Thu Jun 1 20:37:26 UTC 2023 I: python-pyfaidx_0.7.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pyfaidx Binary: python3-pyfaidx, python-pyfaidx-examples Architecture: all Version: 0.7.1-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/mdshw5/pyfaidx Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/python-pyfaidx Vcs-Git: https://salsa.debian.org/med-team/python-pyfaidx.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-biopython, python3-numpy, python3-pytest, tabix Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-coverage, python3-setuptools, python3-biopython, python3-numpy , python3-pkg-resources , python3-pytest , python3-six , python3-mock , samtools , tabix Package-List: python-pyfaidx-examples deb python optional arch=all python3-pyfaidx deb python optional arch=all Checksums-Sha1: 0f9f582249396522714546c739c7df0b0244e23d 96743 python-pyfaidx_0.7.1.orig.tar.gz 69f1151890503805c8652ea43dbe76debf2aa383 6848 python-pyfaidx_0.7.1-2.debian.tar.xz Checksums-Sha256: 1bc85c024804d847466d4c9264c6d9147a376eac644554050a5c068bab2b55e4 96743 python-pyfaidx_0.7.1.orig.tar.gz b2bbe8d8a9e551a77f2b0957c280d6bc992f0c0e7ba9f7f8ffbcd8ef6ea06526 6848 python-pyfaidx_0.7.1-2.debian.tar.xz Files: cc9bf00bf7472fd771e26cccd676c5cf 96743 python-pyfaidx_0.7.1.orig.tar.gz 7b4fc1f041af61ab2369941916e7c713 6848 python-pyfaidx_0.7.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmOBOkUUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqdAhAAkWiIYLEWphaVbgCrN4zhiOHXkF19 cut5HlL0bNXC/bVHrkpjmwNtQ/s+S28PSNtAo5R9fg3cgK7c39/o+RGZYqpu82RX y7/RCIwPH9564NogHsjlNNRjK8fK3nHi4pCqHv5Hd5rsrISiCO6Qa1JScx7pNMvm 5E0e93Nd+lB7jIaV0IzZDDEw5uWOzXzu7yD8OTpR/kBn0oE0GGj1Fomk2kHG0E4N K0SeP7I3Fkb7Bmj6IDCI28OEl6I0KS/kSXiebLeocjvaJPeDzBsfS8CTA+HVji7e IKrozrOdAWrkHdk0lj+zdolpft4PAvPpoU25s10AIVl/KjmN+JgBGbhG3FpR1GSU jorXs+qDmjJCNY/C+riRS+RBDNIx4pcQySISg1mWaObKIfP/V1dgsPmZexx3zkgx xiSW16FhYhjquTkt2yi1WDf7Bf4AxtVbLvBdY4UM2cR2AprDvCvtJaRr01ABzXVu bJTUofr4zoClnvqhs4DwqRWJTdqu9UNbybSMcBY8SWc00i0h/Qqhx3qGEMrDKe8R sOasL+zVhNNYOCCK5TqDMPDrfuGxS3cJDSufDP15uT3MFwyU6kDD7it86qdLMRhH RGGkm9rD69cpBc6D7lJ216sc1SzmAc1LpW2igWhUo23pBAaA6sj06UdjFIk2ydwN OW0W614dSyaK1D8= =14jT -----END PGP SIGNATURE----- Thu Jun 1 20:37:26 UTC 2023 I: Checking whether the package is not for us Thu Jun 1 20:37:26 UTC 2023 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Thu Jun 1 20:37:26 UTC 2023 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Thu Jun 1 20:53:56 UTC 2023 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 1 08:37:33 -12 2023 I: pbuilder-time-stamp: 1685651853 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyfaidx_0.7.1-2.dsc] I: copying [./python-pyfaidx_0.7.1.orig.tar.gz] I: copying [./python-pyfaidx_0.7.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 25 09:57:25 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.7.1-2.dsc: no acceptable signature found dpkg-source: info: extracting python-pyfaidx in python-pyfaidx-0.7.1 dpkg-source: info: unpacking python-pyfaidx_0.7.1.orig.tar.gz dpkg-source: info: unpacking python-pyfaidx_0.7.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test-locale-to-c.patch dpkg-source: info: applying remove-ignore-docstring.patch dpkg-source: info: applying no_setuptools-scm.patch dpkg-source: info: applying fix-pkg-resources.patch dpkg-source: info: applying biopython-1.80.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22545/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='a23cdfa2f56a4af98580f695dd62cbe3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22545' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ECmDM3FA/pbuilderrc_zWGl --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ECmDM3FA/b1 --logfile b1/build.log python-pyfaidx_0.7.1-2.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/22545/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-coverage, python3-setuptools, python3-biopython, python3-numpy, python3-pkg-resources, python3-pytest, python3-six, python3-mock, samtools, tabix dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-coverage; however: Package python3-coverage is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pkg-resources; however: Package python3-pkg-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-mock; however: Package python3-mock is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-biopython{a} python3-coverage{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-mock{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pbr{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3-six{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sgml-base{a} tabix{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 113 newly installed, 0 to remove and 0 not upgraded. Need to get 54.4 MB of archives. After unpacking 178 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf mailcap all 3.70+nmu1 [32.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf mime-support all 3.66 [10.9 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 13 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf sgml-base all 1.31 [15.4 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 35 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 37 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-3 [131 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130 [104 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libfontenc1 armhf 1:1.1.4-1 [21.9 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-10 [343 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf libhtscodecs2 armhf 1.3.0-4 [60.4 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf libhts3 armhf 1.16+ds-3 [375 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libimagequant0 armhf 2.17.0-1 [27.9 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf liblcms2-2 armhf 2.14-2 [125 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf libncurses6 armhf 6.4-4 [81.1 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libopenjp2-7 armhf 2.5.0-2 [169 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libraqm0 armhf 0.7.0-4.1 [9116 B] Get: 83 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.2 [242 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-6 [295 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libwebpdemux2 armhf 1.2.4-0.2 [98.3 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf libwebpmux3 armhf 1.2.4-0.2 [106 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf python3-all armhf 3.11.2-1+b1 [1060 B] Get: 91 http://deb.debian.org/debian bookworm/main armhf python3-attr all 22.2.0-1 [65.4 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf python3-renderpm armhf 3.6.12-1+b1 [66.2 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf python3-reportlab-accel armhf 3.6.12-1+b1 [37.3 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf python3-pil armhf 9.4.0-1.1+b1 [438 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf python3-reportlab all 3.6.12-1 [564 kB] Get: 98 http://deb.debian.org/debian bookworm/main armhf xml-core all 0.18+nmu1 [23.8 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf w3c-sgml-lib all 1.3-3 [273 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf python3-biopython armhf 1.80+dfsg-4+b1 [1568 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf python3-coverage armhf 6.5.0+dfsg1-2+b1 [152 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 103 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf python3-six all 1.16.0-4 [17.5 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf python3-pbr all 5.10.0-2 [61.4 kB] Get: 106 http://deb.debian.org/debian bookworm/main armhf python3-mock all 4.0.3-4 [64.0 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf python3-py all 1.11.0-1 [89.2 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf python3-pytest all 7.2.1-2 [236 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf samtools armhf 1.16.1-1 [575 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf tabix armhf 1.16+ds-3 [388 kB] Fetched 54.4 MB in 30s (1827 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19640 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_armhf.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../5-libreadline8_8.2-1.3_armhf.deb ... Unpacking libreadline8:armhf (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.2-6_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.2-6_armhf.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../8-libpython3-stdlib_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20098 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../004-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../007-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../009-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../010-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../021-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../024-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../026-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../027-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../032-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../033-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../034-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libfontenc1:armhf. Preparing to unpack .../035-libfontenc1_1%3a1.1.4-1_armhf.deb ... Unpacking libfontenc1:armhf (1:1.1.4-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../036-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../037-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../038-libfreetype6_2.12.1+dfsg-5_armhf.deb ... Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ... Selecting previously unselected package x11-common. Preparing to unpack .../039-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../040-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../041-xfonts-utils_1%3a7.7+6_armhf.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../042-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../043-libblas3_3.11.0-2_armhf.deb ... Unpacking libblas3:armhf (3.11.0-2) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../044-libbsd0_0.11.7-2_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-2) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../045-libsasl2-modules-db_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../046-libsasl2-2_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../047-libldap-2.5-0_2.5.13+dfsg-5_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../048-libnghttp2-14_1.52.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.52.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../049-libpsl5_0.21.2-1_armhf.deb ... Unpacking libpsl5:armhf (0.21.2-1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../050-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../051-libssh2-1_1.10.0-3+b1_armhf.deb ... Unpacking libssh2-1:armhf (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:armhf. Preparing to unpack .../052-libcurl3-gnutls_7.88.1-10_armhf.deb ... Unpacking libcurl3-gnutls:armhf (7.88.1-10) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../053-libdeflate0_1.14-1_armhf.deb ... Unpacking libdeflate0:armhf (1.14-1) ... Selecting previously unselected package libfribidi0:armhf. Preparing to unpack .../054-libfribidi0_1.0.8-2.1_armhf.deb ... Unpacking libfribidi0:armhf (1.0.8-2.1) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../055-libgfortran5_12.2.0-14_armhf.deb ... Unpacking libgfortran5:armhf (12.2.0-14) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../056-libglib2.0-0_2.74.6-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.74.6-2) ... Selecting previously unselected package libgraphite2-3:armhf. 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Setting up python3-reportlab (3.6.12-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-renderpm:armhf (3.6.12-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-pbr (5.10.0-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-coverage (6.5.0+dfsg1-2+b1) ... Setting up python3-mock (4.0.3-4) ... Setting up python3-numpy (1:1.24.2-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-pyfaidx-0.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyfaidx_0.7.1-2_source.changes dpkg-buildpackage: info: source package python-pyfaidx dpkg-buildpackage: info: source version 0.7.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-pyfaidx-0.7.1' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -f .coverage rm -f tests/data/genes.fasta.gz rm -rf pyfaidx.egg-info make[1]: Leaving directory '/build/python-pyfaidx-0.7.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary LC_ALL=C.UTF-8 dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx copying pyfaidx/__init__.py -> /build/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx copying pyfaidx/cli.py -> /build/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-pyfaidx-0.7.1' bgzip -c tests/data/genes.fasta > tests/data/genes.fasta.gz dh_auto_test I: pybuild base:240: cd /build/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/python-pyfaidx-0.7.1 collected 135 items tests/test_FastaRecord.py ..... [ 3%] tests/test_FastaRecord_iter.py ... [ 5%] tests/test_FastaVariant.py ssssss [ 10%] tests/test_Fasta_bgzip.py x.....x..................... [ 31%] tests/test_Fasta_integer_index.py .. [ 32%] tests/test_Fasta_synchronization.py ... [ 34%] tests/test_Path.py .. [ 36%] tests/test_bio_seqio.py ... [ 38%] tests/test_faidx.py ......... [ 45%] tests/test_feature_bounds_check.py ........................ [ 62%] tests/test_feature_default_seq.py . [ 63%] tests/test_feature_indexing.py .............. [ 74%] tests/test_feature_key_function.py ...... [ 78%] tests/test_feature_read_ahead_buffer.py ..... [ 82%] tests/test_feature_sequence_as_raw.py ..... [ 85%] tests/test_feature_spliced_seq.py .. [ 87%] tests/test_feature_split_char.py .... [ 90%] tests/test_fsspec.py ssss [ 93%] tests/test_sequence_class.py ......... [100%] ============ 123 passed, 10 skipped, 2 xfailed in 117.33s (0:01:57) ============ make[1]: Leaving directory '/build/python-pyfaidx-0.7.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx creating /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr creating /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib creating /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11 creating /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages creating /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx copying /build/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx/__init__.py -> /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx copying /build/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx/cli.py -> /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx creating /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx/__pycache__ copying /build/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx/__pycache__/__init__.cpython-311.pyc -> /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx/__pycache__ copying /build/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx/__pycache__/cli.cpython-311.pyc -> /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx/__pycache__ byte-compiling /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx/cli.py to cli.cpython-311.pyc running install_egg_info running egg_info creating pyfaidx.egg-info writing pyfaidx.egg-info/PKG-INFO writing dependency_links to pyfaidx.egg-info/dependency_links.txt writing entry points to pyfaidx.egg-info/entry_points.txt writing requirements to pyfaidx.egg-info/requires.txt writing top-level names to pyfaidx.egg-info/top_level.txt writing manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'docs/build/html/*' adding license file 'LICENSE' writing manifest file 'pyfaidx.egg-info/SOURCES.txt' Copying pyfaidx.egg-info to /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx-0.0.0.egg-info Skipping SOURCES.txt running install_scripts Installing faidx script to /build/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/python-pyfaidx-0.7.1' dh_compress --exclude=gz.tbi make[1]: Leaving directory '/build/python-pyfaidx-0.7.1' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyfaidx' in '../python3-pyfaidx_0.7.1-2_all.deb'. dpkg-deb: building package 'python-pyfaidx-examples' in '../python-pyfaidx-examples_0.7.1-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyfaidx_0.7.1-2_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pyfaidx_0.7.1-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22545 and its subdirectories I: Current time: Thu Jun 1 08:53:51 -12 2023 I: pbuilder-time-stamp: 1685652831 Thu Jun 1 20:53:58 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ff4a-armhf-rb.debian.net. Thu Jun 1 20:53:58 UTC 2023 I: Preparing to do remote build '2' on ff4a-armhf-rb.debian.net. Thu Jun 1 21:03:13 UTC 2023 I: Deleting $TMPDIR on ff4a-armhf-rb.debian.net. Thu Jun 1 21:03:17 UTC 2023 I: python-pyfaidx_0.7.1-2_armhf.changes: Format: 1.8 Date: Fri, 25 Nov 2022 22:51:46 +0100 Source: python-pyfaidx Binary: python-pyfaidx-examples python3-pyfaidx Architecture: all Version: 0.7.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python-pyfaidx-examples - example data for efficient random access to fasta subsequences fo python3-pyfaidx - efficient random access to fasta subsequences for Python 3 Changes: python-pyfaidx (0.7.1-2) unstable; urgency=medium . * biopython-1.80.patch: add; fix test failure with biopython 1.80. * d/control: add myself to uploaders. * d/t/run-unit-test: run on supported python3 versions. * d/python-pyfaidx-examples.lintian-overrides: silence warning. * d/t/control: test depends on python3-all. Checksums-Sha1: 6540a43c89bf6b7fa205a4d2a5b3ec06d3b15ae0 43760 python-pyfaidx-examples_0.7.1-2_all.deb 7ce61a1b7065fd0e01db280dc55e7de2c10e2c99 7676 python-pyfaidx_0.7.1-2_armhf.buildinfo 731ee26fe3e9f4502395df4758dfb1e3cde58971 28016 python3-pyfaidx_0.7.1-2_all.deb Checksums-Sha256: dee24dac569e8acccc3edc820fc3916036656c035045fd4e7baaf9cb6860179a 43760 python-pyfaidx-examples_0.7.1-2_all.deb 0febc1bf64b04ee74a23aa80c46b34bd122b1b92ec459e6659fe5d32042fcf61 7676 python-pyfaidx_0.7.1-2_armhf.buildinfo 85f1144682205312e82c34784523e7961393e447b6dd10fd5593c1136473eb98 28016 python3-pyfaidx_0.7.1-2_all.deb Files: 9411d69a17063e0f25077940778f4413 43760 python optional python-pyfaidx-examples_0.7.1-2_all.deb 7681380c3ec547821d26983f9309a674 7676 python optional python-pyfaidx_0.7.1-2_armhf.buildinfo 8195f3a6273899b0b50250fa9acf130e 28016 python optional python3-pyfaidx_0.7.1-2_all.deb Thu Jun 1 21:03:18 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ECmDM3FA/python-pyfaidx_0.7.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ECmDM3FA/python-pyfaidx_0.7.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ECmDM3FA/python-pyfaidx_0.7.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ECmDM3FA/b1/python-pyfaidx_0.7.1-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.ECmDM3FA/b2/python-pyfaidx_0.7.1-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.327s) 0.327s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Jun 1 21:03:19 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu Jun 1 21:03:19 UTC 2023 I: python-pyfaidx from bookworm built successfully and reproducibly on armhf. Thu Jun 1 21:03:20 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Jun 1 21:03:20 UTC 2023 I: Submitting 12K b1/python-pyfaidx_0.7.1-2_armhf.buildinfo.asc Thu Jun 1 21:03:22 UTC 2023 I: Submitting 12K b2/python-pyfaidx_0.7.1-2_armhf.buildinfo.asc Thu Jun 1 21:03:22 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jun 1 21:03:22 UTC 2023 I: Done submitting .buildinfo files. Thu Jun 1 21:03:22 UTC 2023 I: Removing signed python-pyfaidx_0.7.1-2_armhf.buildinfo.asc files: removed './b1/python-pyfaidx_0.7.1-2_armhf.buildinfo.asc' removed './b2/python-pyfaidx_0.7.1-2_armhf.buildinfo.asc'