Fri May 5 17:17:39 UTC 2023 I: starting to build python-pauvre/bookworm/armhf on jenkins on '2023-05-05 17:17' Fri May 5 17:17:39 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_29/7457/console.log Fri May 5 17:17:39 UTC 2023 I: Downloading source for bookworm/python-pauvre=0.2.3-2 --2023-05-05 17:17:40-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-pauvre/python-pauvre_0.2.3-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2485 (2.4K) [text/prs.lines.tag] Saving to: ‘python-pauvre_0.2.3-2.dsc’ 0K .. 100% 90.6M=0s 2023-05-05 17:17:40 (90.6 MB/s) - ‘python-pauvre_0.2.3-2.dsc’ saved [2485/2485] Fri May 5 17:17:40 UTC 2023 I: python-pauvre_0.2.3-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pauvre Binary: python3-pauvre Architecture: all Version: 0.2.3-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/conchoecia/pauvre Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-pauvre Vcs-Git: https://salsa.debian.org/med-team/python-pauvre.git Testsuite: autopkgtest Testsuite-Triggers: python3-nanoget-examples Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib , python3-biopython , python3-pandas , python3-numpy , python3-scipy , python3-sklearn , python3-tk , python3-progressbar Package-List: python3-pauvre deb python optional arch=all Checksums-Sha1: 7842280d5f38d93bd4794c5b7fc33bce8db3033a 61853 python-pauvre_0.2.3.orig.tar.gz dbc83f44f932058a24c25c65cd8fe7689d57d159 7652 python-pauvre_0.2.3-2.debian.tar.xz Checksums-Sha256: ba756bc9025ae7edafd91092d12a57864f018958fd46b548e9eeda7167ee197d 61853 python-pauvre_0.2.3.orig.tar.gz 71acb8f2a3b225fafb7a306ae05b5f4f7f063a78e0a52280cc85369c9a89730c 7652 python-pauvre_0.2.3-2.debian.tar.xz Files: c703cada35c529447e375d0868d63c8f 61853 python-pauvre_0.2.3.orig.tar.gz e2911898c6cc67d8b1c316151ba9c01e 7652 python-pauvre_0.2.3-2.debian.tar.xz Dgit: eaf403572f782d39230603aa6512460cdfa4e756 debian archive/debian/0.2.3-2 https://git.dgit.debian.org/python-pauvre -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmOfNTAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpNjg//X2+raqSPhO0kUCGdSWC+6DYVz65B 6Pode6LySGzGSuVbfHY/SxAb9jeURxXanJYWknX0wOS1wmmZwdvtWrl27k6dAwaL dFsBBURyIV7SbYUykvjqQ0fLKTh+JUXAnRzeCvqgYj7AQi2ZvMRtZRMi1hP1a2wb 7vBqSTNPRF5fDwXpRq9CFdtyCUKbV6NFKm7ePwrJAHOv1b27wwJVJ2jCdyPeUWyj lrhh81k6krgpybxnuG6gywQaI+6ih60hlMtoTb4KID3VwCezQ5j4E2FVCUtuyiAg TGcWXTIZHhuMrmLs/XjX1M27hXZSNUVTfMRvoA1TCfm9l1EVE5umQ8CYr7nE2tXT Ngb0V5da3PVL4RyA8Hof1s8ft3IgjI0W3azS4D7LIvT/RQjDcvCe1p6zPOWoNzCp T11JoSLlV9sQp4uVE9MWBsyD30MPQCxVbmorK5oLGF4amrGBNCO9yR3/HGLvZQMJ C3N+jGjbcd45uJKRf/shnSRowOHyOcRpV+iVDduTYC5he56tjR9qbWcJfm/QTl8+ VU/i2F3lTgJ84Si3rxc93/OZIiPa46wUHAcgEYWlujM7aEJuBlANKpySQsK2aNCs u2oUdQ8v/qDgXyKfvMjJJprz1iV+7+et3HlA9HoUF2Sky1Q4dmOMrCLWZDO+hh1p zr6nqOs+ZCQePyc= =fau7 -----END PGP SIGNATURE----- Fri May 5 17:17:40 UTC 2023 I: Checking whether the package is not for us Fri May 5 17:17:40 UTC 2023 I: Starting 1st build on remote node virt32a-armhf-rb.debian.net. Fri May 5 17:17:40 UTC 2023 I: Preparing to do remote build '1' on virt32a-armhf-rb.debian.net. Fri May 5 17:39:48 UTC 2023 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 5 05:17:48 -12 2023 I: pbuilder-time-stamp: 1683307069 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pauvre_0.2.3-2.dsc] I: copying [./python-pauvre_0.2.3.orig.tar.gz] I: copying [./python-pauvre_0.2.3-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 18 03:43:44 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-2.dsc: no acceptable signature found dpkg-source: info: extracting python-pauvre in python-pauvre-0.2.3 dpkg-source: info: unpacking python-pauvre_0.2.3.orig.tar.gz dpkg-source: info: unpacking python-pauvre_0.2.3-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying lsi-test-args.patch dpkg-source: info: applying biopython-1.80.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/21462/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='6bd1551e7cd443ed81f8383f19be4774' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='21462' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KsgZZ8Ol/pbuilderrc_dkfT --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KsgZZ8Ol/b1 --logfile b1/build.log python-pauvre_0.2.3-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32a 5.10.0-22-armmp-lpae #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/21462/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib, python3-biopython, python3-pandas, python3-numpy, python3-scipy, python3-sklearn, python3-tk, python3-progressbar dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-progressbar; however: Package python3-progressbar is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libproc2-0{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-appdirs{a} python3-attr{a} python3-biopython{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-joblib{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-progressbar{a} python3-pyparsing{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sklearn{a} python3-sklearn-lib{a} python3-sympy{a} python3-threadpoolctl{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ psmisc python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-nose python3-numexpr python3-odf python3-olefile python3-openpyxl python3-psutil python3-pytest python3-simplejson python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After unpacking 411 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf sgml-base all 1.31 [15.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf libproc2-0 armhf 2:4.0.2-3 [54.2 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf procps armhf 2:4.0.2-3 [695 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf libfontenc1 armhf 1:1.1.4-1 [21.9 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 40 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2 [292 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2 [695 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libxft2 armhf 2.3.6-1 [53.8 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libtk8.6 armhf 8.6.13-2 [689 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [489 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 60 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 62 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-2 [131 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130 [104 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf fonts-lyx all 2.3.7-1 [186 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libimagequant0 armhf 2.17.0-1 [27.9 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [25.0 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf liblcms2-2 armhf 2.14-2 [125 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libopenjp2-7 armhf 2.5.0-1+b1 [170 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf libqhull-r8.0 armhf 2020.2-5 [224 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf libraqm0 armhf 0.7.0-4.1 [9116 B] Get: 93 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.1 [242 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-5 [295 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf libwebpdemux2 armhf 1.2.4-0.1 [98.2 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf libwebpmux3 armhf 1.2.4-0.1 [105 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf libxslt1.1 armhf 1.1.35-1 [223 kB] Get: 98 http://deb.debian.org/debian bookworm/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf python3-appdirs all 1.4.4-3 [13.0 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf python3-attr all 22.2.0-1 [65.4 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf python3-renderpm armhf 3.6.12-1+b1 [66.2 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf python3-reportlab-accel armhf 3.6.12-1+b1 [37.3 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf python3-tk armhf 3.11.2-2 [95.3 kB] Get: 106 http://deb.debian.org/debian bookworm/main armhf python3-pil.imagetk armhf 9.4.0-1.1+b1 [73.9 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf python3-pil armhf 9.4.0-1.1+b1 [438 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf python3-reportlab all 3.6.12-1 [564 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf xml-core all 0.18+nmu1 [23.8 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf w3c-sgml-lib all 1.3-3 [273 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf python3-biopython armhf 1.80+dfsg-4+b1 [1568 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf python3-brotli armhf 1.0.9-2+b6 [274 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf python3-contourpy armhf 1.0.7-1+b1 [146 kB] Get: 114 http://deb.debian.org/debian bookworm/main armhf python3-cycler all 0.11.0-1 [8020 B] Get: 115 http://deb.debian.org/debian bookworm/main armhf python3-six all 1.16.0-4 [17.5 kB] Get: 116 http://deb.debian.org/debian bookworm/main armhf python3-dateutil all 2.8.2-2 [78.3 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf python3-decorator all 5.1.1-3 [14.9 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf python3-scipy armhf 1.10.1-2 [13.8 MB] Get: 119 http://deb.debian.org/debian bookworm/main armhf python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf python3-mpmath all 1.2.1-2 [418 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf python3-sympy all 1.11.1-1 [4358 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf python3-tz all 2022.7.1-3 [30.1 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf python3-fs all 2.4.16-2 [95.2 kB] Get: 124 http://deb.debian.org/debian bookworm/main armhf python3-lxml armhf 4.9.2-1+b1 [1082 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b2 [23.3 kB] Get: 126 http://deb.debian.org/debian bookworm/main armhf python3-unicodedata2 armhf 14.0.0+ds2-1+b2 [297 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf unicode-data all 15.0.0-1 [7984 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf python3-fonttools armhf 4.38.0-1+b1 [989 kB] Get: 129 http://deb.debian.org/debian bookworm/main armhf python3-joblib all 1.2.0-4 [211 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf python3-kiwisolver armhf 1.4.4-1+b1 [50.7 kB] Get: 131 http://deb.debian.org/debian bookworm/main armhf python3-pyparsing all 3.0.9-1 [138 kB] Get: 132 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf python3-matplotlib armhf 3.6.3-1+b1 [6784 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf python3-pandas-lib armhf 1.5.3+dfsg-2 [3167 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf python3-progressbar all 2.5-3 [11.6 kB] Get: 137 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Get: 138 http://deb.debian.org/debian bookworm/main armhf python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf python3-sklearn-lib armhf 1.2.1+dfsg-1 [2172 kB] Get: 140 http://deb.debian.org/debian bookworm/main armhf python3-sklearn all 1.2.1+dfsg-1 [2103 kB] Fetched 108 MB in 6s (17.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19645 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_armhf.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../3-libreadline8_8.2-1.3_armhf.deb ... Unpacking libreadline8:armhf (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_armhf.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20079 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:armhf. Preparing to unpack .../002-libproc2-0_2%3a4.0.2-3_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.2-3_armhf.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../006-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../009-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../012-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libtcl8.6:armhf. Preparing to unpack .../019-libtcl8.6_8.6.13+dfsg-2_armhf.deb ... Unpacking libtcl8.6:armhf (8.6.13+dfsg-2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../020-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../021-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../022-libfreetype6_2.12.1+dfsg-5_armhf.deb ... Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../023-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package libfontenc1:armhf. Preparing to unpack .../024-libfontenc1_1%3a1.1.4-1_armhf.deb ... Unpacking libfontenc1:armhf (1:1.1.4-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../025-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../026-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../027-xfonts-utils_1%3a7.7+6_armhf.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../028-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../029-fontconfig-config_2.14.1-4_armhf.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../030-libfontconfig1_2.14.1-4_armhf.deb ... Unpacking libfontconfig1:armhf (2.14.1-4) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../031-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../032-libbsd0_0.11.7-2_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-2) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../033-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../034-libxcb1_1.15-1_armhf.deb ... Unpacking libxcb1:armhf (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../035-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../036-libx11-6_2%3a1.8.4-2_armhf.deb ... Unpacking libx11-6:armhf (2:1.8.4-2) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../037-libxrender1_1%3a0.9.10-1.1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1.1) ... Selecting previously unselected package libxft2:armhf. Preparing to unpack .../038-libxft2_2.3.6-1_armhf.deb ... Unpacking libxft2:armhf (2.3.6-1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../039-libxext6_2%3a1.3.4-1+b1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b1) ... Selecting previously unselected package libxss1:armhf. Preparing to unpack .../040-libxss1_1%3a1.2.3-1_armhf.deb ... Unpacking libxss1:armhf (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:armhf. Preparing to unpack .../041-libtk8.6_8.6.13-2_armhf.deb ... Unpacking libtk8.6:armhf (8.6.13-2) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../042-tk8.6-blt2.5_2.5.3+dfsg-4.1_armhf.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Selecting previously unselected package blt. Preparing to unpack .../043-blt_2.5.3+dfsg-4.1_armhf.deb ... Unpacking blt (2.5.3+dfsg-4.1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../044-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../045-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../046-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../047-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../048-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../049-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../050-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../051-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../052-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../053-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../054-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../055-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../056-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../057-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../058-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../059-python3-lib2to3_3.11.2-2_all.deb ... Unpacking python3-lib2to3 (3.11.2-2) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../060-python3-distutils_3.11.2-2_all.deb ... Unpacking python3-distutils (3.11.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../061-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../062-fonts-lyx_2.3.7-1_all.deb ... Unpacking fonts-lyx (2.3.7-1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../063-libblas3_3.11.0-2_armhf.deb ... Unpacking libblas3:armhf (3.11.0-2) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../064-libdeflate0_1.14-1_armhf.deb ... Unpacking libdeflate0:armhf (1.14-1) ... Selecting previously unselected package libfribidi0:armhf. Preparing to unpack .../065-libfribidi0_1.0.8-2.1_armhf.deb ... Unpacking libfribidi0:armhf (1.0.8-2.1) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../066-libgfortran5_12.2.0-14_armhf.deb ... Unpacking libgfortran5:armhf (12.2.0-14) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../067-libglib2.0-0_2.74.6-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.74.6-2) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../068-libgraphite2-3_1.3.14-1_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../069-libharfbuzz0b_6.0.0+dfsg-3_armhf.deb ... Unpacking libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Selecting previously unselected package libimagequant0:armhf. Preparing to unpack .../070-libimagequant0_2.17.0-1_armhf.deb ... Unpacking libimagequant0:armhf (2.17.0-1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../071-libjbig0_2.1-6.1_armhf.deb ... Unpacking libjbig0:armhf (2.1-6.1) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../072-libjpeg62-turbo_1%3a2.1.5-2_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.1.5-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../073-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../074-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../075-liblapack3_3.11.0-2_armhf.deb ... Unpacking liblapack3:armhf (3.11.0-2) ... Selecting previously unselected package liblbfgsb0:armhf. Preparing to unpack .../076-liblbfgsb0_3.0+dfsg.4-1_armhf.deb ... Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1) ... Selecting previously unselected package liblcms2-2:armhf. Preparing to unpack .../077-liblcms2-2_2.14-2_armhf.deb ... Unpacking liblcms2-2:armhf (2.14-2) ... Selecting previously unselected package liblerc4:armhf. Preparing to unpack .../078-liblerc4_4.0.0+ds-2_armhf.deb ... Unpacking liblerc4:armhf (4.0.0+ds-2) ... Selecting previously unselected package libopenjp2-7:armhf. Preparing to unpack .../079-libopenjp2-7_2.5.0-1+b1_armhf.deb ... Unpacking libopenjp2-7:armhf (2.5.0-1+b1) ... Selecting previously unselected package libqhull-r8.0:armhf. Preparing to unpack .../080-libqhull-r8.0_2020.2-5_armhf.deb ... Unpacking libqhull-r8.0:armhf (2020.2-5) ... Selecting previously unselected package libraqm0:armhf. Preparing to unpack .../081-libraqm0_0.7.0-4.1_armhf.deb ... Unpacking libraqm0:armhf (0.7.0-4.1) ... Selecting previously unselected package libwebp7:armhf. Preparing to unpack .../082-libwebp7_1.2.4-0.1_armhf.deb ... Unpacking libwebp7:armhf (1.2.4-0.1) ... Selecting previously unselected package libtiff6:armhf. Preparing to unpack .../083-libtiff6_4.5.0-5_armhf.deb ... Unpacking libtiff6:armhf (4.5.0-5) ... Selecting previously unselected package libwebpdemux2:armhf. Preparing to unpack .../084-libwebpdemux2_1.2.4-0.1_armhf.deb ... Unpacking libwebpdemux2:armhf (1.2.4-0.1) ... Selecting previously unselected package libwebpmux3:armhf. Preparing to unpack .../085-libwebpmux3_1.2.4-0.1_armhf.deb ... Unpacking libwebpmux3:armhf (1.2.4-0.1) ... Selecting previously unselected package libxslt1.1:armhf. Preparing to unpack .../086-libxslt1.1_1.1.35-1_armhf.deb ... Unpacking libxslt1.1:armhf (1.1.35-1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../087-python-matplotlib-data_3.6.3-1_all.deb ... Unpacking python-matplotlib-data (3.6.3-1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../088-python3-appdirs_1.4.4-3_all.deb ... Unpacking python3-appdirs (1.4.4-3) ... Selecting previously unselected package python3-attr. Preparing to unpack .../089-python3-attr_22.2.0-1_all.deb ... Unpacking python3-attr (22.2.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../090-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../091-python3-numpy_1%3a1.24.2-1_armhf.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-renderpm:armhf. Preparing to unpack .../092-python3-renderpm_3.6.12-1+b1_armhf.deb ... Unpacking python3-renderpm:armhf (3.6.12-1+b1) ... Selecting previously unselected package python3-reportlab-accel:armhf. Preparing to unpack .../093-python3-reportlab-accel_3.6.12-1+b1_armhf.deb ... Unpacking python3-reportlab-accel:armhf (3.6.12-1+b1) ... Selecting previously unselected package python3-tk:armhf. Preparing to unpack .../094-python3-tk_3.11.2-2_armhf.deb ... Unpacking python3-tk:armhf (3.11.2-2) ... Selecting previously unselected package python3-pil.imagetk:armhf. Preparing to unpack .../095-python3-pil.imagetk_9.4.0-1.1+b1_armhf.deb ... Unpacking python3-pil.imagetk:armhf (9.4.0-1.1+b1) ... Selecting previously unselected package python3-pil:armhf. Preparing to unpack .../096-python3-pil_9.4.0-1.1+b1_armhf.deb ... Unpacking python3-pil:armhf (9.4.0-1.1+b1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../097-python3-reportlab_3.6.12-1_all.deb ... Unpacking python3-reportlab (3.6.12-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../098-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../099-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../100-python3-biopython_1.80+dfsg-4+b1_armhf.deb ... Unpacking python3-biopython (1.80+dfsg-4+b1) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../101-python3-brotli_1.0.9-2+b6_armhf.deb ... Unpacking python3-brotli (1.0.9-2+b6) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../102-python3-contourpy_1.0.7-1+b1_armhf.deb ... Unpacking python3-contourpy (1.0.7-1+b1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../103-python3-cycler_0.11.0-1_all.deb ... Unpacking python3-cycler (0.11.0-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../104-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../105-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../106-python3-decorator_5.1.1-3_all.deb ... Unpacking python3-decorator (5.1.1-3) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../107-python3-scipy_1.10.1-2_armhf.deb ... Unpacking python3-scipy (1.10.1-2) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../108-python3-ufolib2_0.14.0+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.14.0+dfsg1-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../109-python3-mpmath_1.2.1-2_all.deb ... Unpacking python3-mpmath (1.2.1-2) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../110-python3-sympy_1.11.1-1_all.deb ... Unpacking python3-sympy (1.11.1-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../111-python3-tz_2022.7.1-3_all.deb ... Unpacking python3-tz (2022.7.1-3) ... Selecting previously unselected package python3-fs. Preparing to unpack .../112-python3-fs_2.4.16-2_all.deb ... Unpacking python3-fs (2.4.16-2) ... Selecting previously unselected package python3-lxml:armhf. Preparing to unpack .../113-python3-lxml_4.9.2-1+b1_armhf.deb ... Unpacking python3-lxml:armhf (4.9.2-1+b1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../114-python3-lz4_4.0.2+dfsg-1+b2_armhf.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b2) ... Selecting previously unselected package python3-unicodedata2. Preparing to unpack .../115-python3-unicodedata2_14.0.0+ds2-1+b2_armhf.deb ... Unpacking python3-unicodedata2 (14.0.0+ds2-1+b2) ... Selecting previously unselected package unicode-data. Preparing to unpack .../116-unicode-data_15.0.0-1_all.deb ... Unpacking unicode-data (15.0.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../117-python3-fonttools_4.38.0-1+b1_armhf.deb ... Unpacking python3-fonttools (4.38.0-1+b1) ... Selecting previously unselected package python3-joblib. Preparing to unpack .../118-python3-joblib_1.2.0-4_all.deb ... Unpacking python3-joblib (1.2.0-4) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../119-python3-kiwisolver_1.4.4-1+b1_armhf.deb ... Unpacking python3-kiwisolver (1.4.4-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../120-python3-pyparsing_3.0.9-1_all.deb ... Unpacking python3-pyparsing (3.0.9-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../121-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../122-python3-matplotlib_3.6.3-1+b1_armhf.deb ... Unpacking python3-matplotlib (3.6.3-1+b1) ... Selecting previously unselected package python3-pandas-lib:armhf. Preparing to unpack .../123-python3-pandas-lib_1.5.3+dfsg-2_armhf.deb ... Unpacking python3-pandas-lib:armhf (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../124-python3-pandas_1.5.3+dfsg-2_all.deb ... Unpacking python3-pandas (1.5.3+dfsg-2) ... Selecting previously unselected package python3-progressbar. Preparing to unpack .../125-python3-progressbar_2.5-3_all.deb ... Unpacking python3-progressbar (2.5-3) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../126-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package python3-threadpoolctl. Preparing to unpack .../127-python3-threadpoolctl_3.1.0-1_all.deb ... Unpacking python3-threadpoolctl (3.1.0-1) ... Selecting previously unselected package python3-sklearn-lib:armhf. Preparing to unpack .../128-python3-sklearn-lib_1.2.1+dfsg-1_armhf.deb ... Unpacking python3-sklearn-lib:armhf (1.2.1+dfsg-1) ... Selecting previously unselected package python3-sklearn. Preparing to unpack .../129-python3-sklearn_1.2.1+dfsg-1_all.deb ... Unpacking python3-sklearn (1.2.1+dfsg-1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libgraphite2-3:armhf (1.3.14-1) ... Setting up liblcms2-2:armhf (2.14-2) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libicu72:armhf (72.1-3) ... Setting up liblerc4:armhf (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.74.6-2) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.7-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:armhf (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libjbig0:armhf (2.1-6.1) ... Setting up unicode-data (15.0.0-1) ... Setting up libfontenc1:armhf (1:1.1.4-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:armhf (1.0.8-2.1) ... Setting up libimagequant0:armhf (2.17.0-1) ... Setting up libproc2-0:armhf (2:4.0.2-3) ... Setting up libpng16-16:armhf (1.6.39-2) ... Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.2.4-0.1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:armhf (4.5.0-5) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libopenjp2-7:armhf (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up sgml-base (1.31) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up libwebpmux3:armhf (1.2.4-0.1) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:armhf (1.2.4-0.1) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:armhf (2.12.1+dfsg-5) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:armhf (1.1.35-1) ... Setting up libx11-6:armhf (2:1.8.4-2) ... Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Setting up libfontconfig1:armhf (2.14.1-4) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.2-6) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:armhf (0.7.0-4.1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:armhf (2.3.6-1) ... Setting up libtk8.6:armhf (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-progressbar (2.5-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:armhf (3.6.12-1+b1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-lxml:armhf (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-renderpm:armhf (3.6.12-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-joblib (1.2.0-4) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-unicodedata2 (14.0.0+ds2-1+b2) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up python3-tk:armhf (3.11.2-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-pandas-lib:armhf (1.5.3+dfsg-2) ... Setting up python3-sklearn-lib:armhf (1.2.1+dfsg-1) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-sklearn (1.2.1+dfsg-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-pil:armhf (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:armhf (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-pauvre-0.2.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pauvre_0.2.3-2_source.changes dpkg-buildpackage: info: source package python-pauvre dpkg-buildpackage: info: source version 0.2.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/pauvre_main.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/marginplot.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/synplot.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/redwood.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/bamparse.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/rcparams.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/functions.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/stats.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/version.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/gfftools.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/browser.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/custommargin.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/__init__.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre creating /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests copying pauvre/tests/test_synplot.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests copying pauvre/tests/__init__.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests creating /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/T.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/Q.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/lsi.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/test.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/helper.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/__init__.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi running egg_info writing pauvre.egg-info/PKG-INFO writing dependency_links to pauvre.egg-info/dependency_links.txt writing entry points to pauvre.egg-info/entry_points.txt writing requirements to pauvre.egg-info/requires.txt writing top-level names to pauvre.egg-info/top_level.txt reading manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pauvre.egg-info/SOURCES.txt' debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-pauvre-0.2.3' PYBUILDDIR="$(echo "/build/python-pauvre-0.2.3"/.pybuild/cpython3_3.*/build)" \ && mkdir -p "${PYBUILDDIR}/pauvre/tests/testdata/alignments" \ "${PYBUILDDIR}/pauvre/tests/testresults" \ && cp -r "/build/python-pauvre-0.2.3/debian/tests/gff_files" \ "${PYBUILDDIR}/pauvre/tests/testdata" \ && BUILDDIR="${PYBUILDDIR}" PATH="/build/python-pauvre-0.2.3/debian/bin:$PATH" \ dh_auto_test \ && rm "${PYBUILDDIR}/input" \ && rm -r "${PYBUILDDIR}/pauvre/tests/testdata" \ "${PYBUILDDIR}/pauvre/tests/testresults" I: pybuild base:240: cd /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build; python3.11 -m unittest discover -v test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case.test_normal_plotting_scenario) This verifies that the LibSeq class is constructed with all of the ... + export PYTHONPATH=/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build + PYTHONPATH=/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build + exec python3 /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/pauvre_main.py synplot --aln_dir /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/alignments/ --fileform pdf --gff_paths /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff --center_on COX1 --gff_labels 'B. forskalii' 'P. bachei' 'M. leidyi' Matplotlib is building the font cache; this may take a moment. /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:75: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only. self.features.drop('dunno1', 1, inplace=True) /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:76: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only. self.features.drop('dunno2', 1, inplace=True) /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:75: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only. self.features.drop('dunno1', 1, inplace=True) /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:76: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only. self.features.drop('dunno2', 1, inplace=True) /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:75: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only. self.features.drop('dunno1', 1, inplace=True) /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:76: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only. self.features.drop('dunno2', 1, inplace=True) 0% | | 1% | | 2% |# | 3% |## | 4% |## | 5% |### | 6% |#### | 7% |##### | 8% |##### | 9% |###### | 10% |####### | 11% |######## | 12% |######## | 13% |######### | 14% |########## | 15% |########### | 16% |########### | 17% |############ | 18% |############# | 19% |############# | 20% |############## | 21% |############### | 22% |################ | 23% |################ | 24% |################# | 25% |################## | 26% |################### | 27% |################### | 28% |#################### | 29% |##################### | 30% |###################### | 31% |###################### | 32% |####################### | 33% |######################## | 34% |######################### | 35% |######################### | 36% |########################## | 37% |########################### | 38% |########################### | 39% |############################ | 40% |############################# | 41% |############################## | 42% |############################## | 43% |############################### | 44% |################################ | 45% |################################# | 47% |################################# | 48% |################################## | 49% |################################### | 50% |#################################### | 51% |#################################### | 52% |##################################### | 53% |###################################### | 54% |####################################### | 55% |####################################### | 56% |######################################## | 57% |######################################### | 58% |######################################### | 59% |########################################## | 60% |########################################### | 61% |############################################ | 62% |############################################ | 63% |############################################# | 64% |############################################## | 65% |############################################### | 66% |############################################### | 67% |################################################ | 68% |################################################# | 69% |################################################## | 70% |################################################## | 71% |################################################### | 72% |#################################################### | 73% |#################################################### | 74% |##################################################### | 75% |###################################################### | 76% |####################################################### | 77% |####################################################### | 78% |######################################################## | 79% |######################################################### | 80% |########################################################## | 81% |########################################################## | 82% |########################################################### | 83% |############################################################ | 84% |############################################################# | 85% |############################################################# | 86% |############################################################## | 87% |############################################################### | 88% |################################################################ | 89% |################################################################ | 90% |################################################################# | 91% |################################################################## | 93% |################################################################## | 94% |################################################################### | 95% |#################################################################### | 96% |##################################################################### | 97% |##################################################################### | 98% |###################################################################### | 99% |####################################################################### | 100% |########################################################################| - Setting tick labels. /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py:564: UserWarning: FixedFormatter should only be used together with FixedLocator panel0.set_xticklabels(empty_string_labels) - Running print_images. Line sweep results: TIME ELAPSED: 0.01599717140197754 N^2 comparison results: 0 TIME ELAPSED: 0.0011277198791503906 15 15 The data is: Namespace(command='synplot', QUIET=False, aln_dir='/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/alignments', center_on='COX1', dpi=600, fileform=['pdf'], gff_paths=['/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff', '/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff', '/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff'], gff_labels=['B. forskalii', 'P. bachei', 'M. leidyi'], no_timestamp=False, optimum_order=False, BASENAME=None, ratio=None, sandwich=False, start_with_aligned_genes=False, stop_codons=True, transparent=True, func=) The best gene combination is [0, 1, 2] new fewest global intersections: 42 new fewest global intersections: 40 new fewest global intersections: 38 new fewest global intersections: 34 new fewest global intersections: 32 getting alignments file list is: {} done getting alignments seqs_dict is: {} sequence source featType start stop strand tags name center width lmost rmost track 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0 11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0 len plottable 15 - i,j are currently: 0,1 stop: -782. start: -760. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0 - i,j are currently: 1,1 stop: 761. start: 1119. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0 - i,j are currently: 2,1 stop: 1495. start: 1495. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0 - i,j are currently: 3,1 stop: 2355. start: 2338. - i,j are currently: 3,2 stop: 2355. start: 2547. - putting elements 3 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0 1 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 - i,j are currently: 4,1 stop: 2539. start: 2547. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 - i,j are currently: 5,1 stop: 3288. start: 3563. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0 - i,j are currently: 6,1 stop: 3935. start: 3938. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0 - i,j are currently: 7,1 stop: 5018. start: 5020. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0 - i,j are currently: 8,1 stop: 5206. start: 5220. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0 - i,j are currently: 9,1 stop: 6696. start: 6847. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0 - i,j are currently: 10,1 stop: 7909. start: 8439. - putting elements 10 through (including) 11 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0 - i,j are currently: 11,1 stop: 9105. start: 9255. - putting elements 11 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0 - i,j are currently: 12,1 stop: 9981. start: 10102. - putting elements 12 through (including) 13 together index sequence source featType start stop strand tags name center width lmost rmost track 0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0 - i,j are currently: 13,1 stop: 11155. start: 11076. index sequence source featType start stop strand tags name center width lmost rmost track 0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0 1 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0 normal path is: Path(array([[-1342. , 2.27], [ -862. , 2.27], [ -782. , 2. ], [ -862. , 1.73], [-1342. , 1.73], [-1342. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-1342, 2.27) ...) length of myPatches is: 1 normal path is: Path(array([[-760. , 2.27], [ 681. , 2.27], [ 761. , 2. ], [ 681. , 1.73], [-760. , 1.73], [-760. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-760, 2.27) ...) length of myPatches is: 2 normal path is: Path(array([[1119. , 2.27], [1415. , 2.27], [1495. , 2. ], [1415. , 1.73], [1119. , 1.73], [1119. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1119, 2.27) ...) length of myPatches is: 3 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((1495, 2.27) ...) length of myPatches is: 4 there are 2 patches after gffplot_feature_hori PathPatch7((2338, 2.27) ...) length of myPatches is: 5 normal path is: Path(array([[2.338e+03, 2.270e+00], [2.459e+03, 2.270e+00], [2.539e+03, 2.000e+00], [2.459e+03, 1.730e+00], [2.338e+03, 1.730e+00], [2.338e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2338, 2.27) ...) length of myPatches is: 6 normal path is: Path(array([[2.547e+03, 2.270e+00], [3.208e+03, 2.270e+00], [3.288e+03, 2.000e+00], [3.208e+03, 1.730e+00], [2.547e+03, 1.730e+00], [2.547e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2547, 2.27) ...) length of myPatches is: 7 normal path is: Path(array([[3.563e+03, 2.270e+00], [3.855e+03, 2.270e+00], [3.935e+03, 2.000e+00], [3.855e+03, 1.730e+00], [3.563e+03, 1.730e+00], [3.563e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3563, 2.27) ...) length of myPatches is: 8 normal path is: Path(array([[3.938e+03, 2.270e+00], [4.938e+03, 2.270e+00], [5.018e+03, 2.000e+00], [4.938e+03, 1.730e+00], [3.938e+03, 1.730e+00], [3.938e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3938, 2.27) ...) length of myPatches is: 9 normal path is: Path(array([[5.020e+03, 2.270e+00], [5.126e+03, 2.270e+00], [5.206e+03, 2.000e+00], [5.126e+03, 1.730e+00], [5.020e+03, 1.730e+00], [5.020e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5020, 2.27) ...) length of myPatches is: 10 normal path is: Path(array([[5.220e+03, 2.270e+00], [6.616e+03, 2.270e+00], [6.696e+03, 2.000e+00], [6.616e+03, 1.730e+00], [5.220e+03, 1.730e+00], [5.220e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5220, 2.27) ...) length of myPatches is: 11 normal path is: Path(array([[6.847e+03, 2.270e+00], [7.829e+03, 2.270e+00], [7.909e+03, 2.000e+00], [7.829e+03, 1.730e+00], [6.847e+03, 1.730e+00], [6.847e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((6847, 2.27) ...) length of myPatches is: 12 normal path is: Path(array([[8.439e+03, 2.270e+00], [9.025e+03, 2.270e+00], [9.105e+03, 2.000e+00], [9.025e+03, 1.730e+00], [8.439e+03, 1.730e+00], [8.439e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((8439, 2.27) ...) length of myPatches is: 13 normal path is: Path(array([[9.255e+03, 2.270e+00], [9.901e+03, 2.270e+00], [9.981e+03, 2.000e+00], [9.901e+03, 1.730e+00], [9.255e+03, 1.730e+00], [9.255e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((9255, 2.27) ...) length of myPatches is: 14 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((10102, 2.27) ...) length of myPatches is: 15 there are 2 patches after gffplot_feature_hori PathPatch7((11076, 2.27) ...) length of myPatches is: 16 There are 16 patches at the end of gffplot_horizontal() sequence source featType start stop strand tags name center width lmost rmost track 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0 10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0 11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0 len plottable 13 - i,j are currently: 0,1 stop: 768. start: 892. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0 - i,j are currently: 1,1 stop: 1470. start: 1750. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0 - i,j are currently: 2,1 stop: 2692. start: 2723. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0 - i,j are currently: 3,1 stop: 3285. start: 3286. - putting elements 3 through (including) 4 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0 - i,j are currently: 4,1 stop: 4023. start: 4034. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0 - i,j are currently: 5,1 stop: 4699. start: 4753. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0 - i,j are currently: 6,1 stop: 5070. start: 5074. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0 - i,j are currently: 7,1 stop: 6141. start: 6306. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0 - i,j are currently: 8,1 stop: 7385. start: 7390. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0 - i,j are currently: 9,1 stop: 8901. start: 8904. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0 - i,j are currently: 10,1 stop: 9740. start: 9743. - putting elements 10 through (including) 11 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0 - i,j are currently: 11,1 stop: 9937. start: 10035. - putting elements 11 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0 index sequence source featType start stop strand tags name center width lmost rmost track 0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0 normal path is: Path(array([[-7.67e+02, 1.27e+00], [ 6.88e+02, 1.27e+00], [ 7.68e+02, 1.00e+00], [ 6.88e+02, 7.30e-01], [-7.67e+02, 7.30e-01], [-7.67e+02, 1.27e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-767, 1.27) ...) length of myPatches is: 1 normal path is: Path(array([[8.92e+02, 1.27e+00], [1.39e+03, 1.27e+00], [1.47e+03, 1.00e+00], [1.39e+03, 7.30e-01], [8.92e+02, 7.30e-01], [8.92e+02, 1.27e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((892, 1.27) ...) length of myPatches is: 2 normal path is: Path(array([[1.750e+03, 1.270e+00], [2.612e+03, 1.270e+00], [2.692e+03, 1.000e+00], [2.612e+03, 7.300e-01], [1.750e+03, 7.300e-01], [1.750e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1750, 1.27) ...) length of myPatches is: 3 normal path is: Path(array([[2.723e+03, 1.270e+00], [3.205e+03, 1.270e+00], [3.285e+03, 1.000e+00], [3.205e+03, 7.300e-01], [2.723e+03, 7.300e-01], [2.723e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2723, 1.27) ...) length of myPatches is: 4 normal path is: Path(array([[3.286e+03, 1.270e+00], [3.943e+03, 1.270e+00], [4.023e+03, 1.000e+00], [3.943e+03, 7.300e-01], [3.286e+03, 7.300e-01], [3.286e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3286, 1.27) ...) length of myPatches is: 5 normal path is: Path(array([[4.034e+03, 1.270e+00], [4.619e+03, 1.270e+00], [4.699e+03, 1.000e+00], [4.619e+03, 7.300e-01], [4.034e+03, 7.300e-01], [4.034e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4034, 1.27) ...) length of myPatches is: 6 normal path is: Path(array([[4.753e+03, 1.270e+00], [4.990e+03, 1.270e+00], [5.070e+03, 1.000e+00], [4.990e+03, 7.300e-01], [4.753e+03, 7.300e-01], [4.753e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4753, 1.27) ...) length of myPatches is: 7 normal path is: Path(array([[5.074e+03, 1.270e+00], [6.061e+03, 1.270e+00], [6.141e+03, 1.000e+00], [6.061e+03, 7.300e-01], [5.074e+03, 7.300e-01], [5.074e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5074, 1.27) ...) length of myPatches is: 8 normal path is: Path(array([[6.306e+03, 1.270e+00], [7.305e+03, 1.270e+00], [7.385e+03, 1.000e+00], [7.305e+03, 7.300e-01], [6.306e+03, 7.300e-01], [6.306e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((6306, 1.27) ...) length of myPatches is: 9 normal path is: Path(array([[7.390e+03, 1.270e+00], [8.821e+03, 1.270e+00], [8.901e+03, 1.000e+00], [8.821e+03, 7.300e-01], [7.390e+03, 7.300e-01], [7.390e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((7390, 1.27) ...) length of myPatches is: 10 normal path is: Path(array([[8.904e+03, 1.270e+00], [9.660e+03, 1.270e+00], [9.740e+03, 1.000e+00], [9.660e+03, 7.300e-01], [8.904e+03, 7.300e-01], [8.904e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((8904, 1.27) ...) length of myPatches is: 11 normal path is: Path(array([[9.743e+03, 1.270e+00], [9.857e+03, 1.270e+00], [9.937e+03, 1.000e+00], [9.857e+03, 7.300e-01], [9.743e+03, 7.300e-01], [9.743e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((9743, 1.27) ...) length of myPatches is: 12 normal path is: Path(array([[1.0035e+04, 1.2700e+00], [1.0152e+04, 1.2700e+00], [1.0232e+04, 1.0000e+00], [1.0152e+04, 7.3000e-01], [1.0035e+04, 7.3000e-01], [1.0035e+04, 1.2700e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((10035, 1.27) ...) length of myPatches is: 13 There are 13 patches at the end of gffplot_horizontal() sequence source featType start stop strand tags name center width lmost rmost track 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0 len plottable 13 - i,j are currently: 0,1 stop: 760. start: 764. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0 - i,j are currently: 1,1 stop: 1486. start: 1486. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0 - i,j are currently: 2,1 stop: 1809. start: 1813. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0 - i,j are currently: 3,1 stop: 2388. start: 2392. - putting elements 3 through (including) 4 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0 - i,j are currently: 4,1 stop: 2759. start: 2760. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0 - i,j are currently: 5,1 stop: 3637. start: 3638. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0 - i,j are currently: 6,1 stop: 4729. start: 4734. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0 - i,j are currently: 7,1 stop: 5456. start: 5460. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0 - i,j are currently: 8,1 stop: 5654. start: 5766. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0 - i,j are currently: 9,1 stop: 7169. start: 7172. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0 - i,j are currently: 10,1 stop: 8038. start: 8014. - i,j are currently: 10,2 stop: 8038. start: 9086. - putting elements 10 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0 1 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 - i,j are currently: 11,1 stop: 9096. start: 9086. index sequence source featType start stop strand tags name center width lmost rmost track 0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 1 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0 normal path is: Path(array([[-7.6e+02, 2.7e-01], [ 6.8e+02, 2.7e-01], [ 7.6e+02, 0.0e+00], [ 6.8e+02, -2.7e-01], [-7.6e+02, -2.7e-01], [-7.6e+02, 2.7e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-760, 0.27) ...) length of myPatches is: 1 normal path is: Path(array([[ 7.640e+02, 2.700e-01], [ 1.406e+03, 2.700e-01], [ 1.486e+03, 0.000e+00], [ 1.406e+03, -2.700e-01], [ 7.640e+02, -2.700e-01], [ 7.640e+02, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((764, 0.27) ...) length of myPatches is: 2 normal path is: Path(array([[ 1.486e+03, 2.700e-01], [ 1.729e+03, 2.700e-01], [ 1.809e+03, 0.000e+00], [ 1.729e+03, -2.700e-01], [ 1.486e+03, -2.700e-01], [ 1.486e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1486, 0.27) ...) length of myPatches is: 3 normal path is: Path(array([[ 1.813e+03, 2.700e-01], [ 2.308e+03, 2.700e-01], [ 2.388e+03, 0.000e+00], [ 2.308e+03, -2.700e-01], [ 1.813e+03, -2.700e-01], [ 1.813e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1813, 0.27) ...) length of myPatches is: 4 normal path is: Path(array([[ 2.392e+03, 2.700e-01], [ 2.679e+03, 2.700e-01], [ 2.759e+03, 0.000e+00], [ 2.679e+03, -2.700e-01], [ 2.392e+03, -2.700e-01], [ 2.392e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2392, 0.27) ...) length of myPatches is: 5 normal path is: Path(array([[ 2.760e+03, 2.700e-01], [ 3.557e+03, 2.700e-01], [ 3.637e+03, 0.000e+00], [ 3.557e+03, -2.700e-01], [ 2.760e+03, -2.700e-01], [ 2.760e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2760, 0.27) ...) length of myPatches is: 6 normal path is: Path(array([[ 3.638e+03, 2.700e-01], [ 4.649e+03, 2.700e-01], [ 4.729e+03, 0.000e+00], [ 4.649e+03, -2.700e-01], [ 3.638e+03, -2.700e-01], [ 3.638e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3638, 0.27) ...) length of myPatches is: 7 normal path is: Path(array([[ 4.734e+03, 2.700e-01], [ 5.376e+03, 2.700e-01], [ 5.456e+03, 0.000e+00], [ 5.376e+03, -2.700e-01], [ 4.734e+03, -2.700e-01], [ 4.734e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4734, 0.27) ...) length of myPatches is: 8 normal path is: Path(array([[ 5.460e+03, 2.700e-01], [ 5.574e+03, 2.700e-01], [ 5.654e+03, 0.000e+00], [ 5.574e+03, -2.700e-01], [ 5.460e+03, -2.700e-01], [ 5.460e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5460, 0.27) ...) length of myPatches is: 9 normal path is: Path(array([[ 5.766e+03, 2.700e-01], [ 7.089e+03, 2.700e-01], [ 7.169e+03, 0.000e+00], [ 7.089e+03, -2.700e-01], [ 5.766e+03, -2.700e-01], [ 5.766e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5766, 0.27) ...) length of myPatches is: 10 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((7172, 0.27) ...) length of myPatches is: 11 there are 2 patches after gffplot_feature_hori PathPatch7((8014, 0.27) ...) length of myPatches is: 12 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((8014, 0.27) ...) length of myPatches is: 13 there are 2 patches after gffplot_feature_hori PathPatch7((9086, 0.27) ...) length of myPatches is: 14 There are 14 patches at the end of gffplot_horizontal() ok ---------------------------------------------------------------------- Ran 1 test in 386.279s OK The return code is: 0 make[1]: Leaving directory '/build/python-pauvre-0.2.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pauvre/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-pauvre-0.2.3/debian/python3-pauvre running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing pauvre.egg-info/PKG-INFO writing dependency_links to pauvre.egg-info/dependency_links.txt writing entry points to pauvre.egg-info/entry_points.txt writing requirements to pauvre.egg-info/requires.txt writing top-level names to pauvre.egg-info/top_level.txt reading manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pauvre.egg-info/SOURCES.txt' running install_lib creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11 creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/pauvre_main.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/marginplot.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/__pycache__/__init__.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/__pycache__/test_synplot.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/test_synplot.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/__init__.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/redwood.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/T.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/Q.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/lsi.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/test.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/test.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/__init__.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/Q.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/lsi.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/T.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/helper.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/helper.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__init__.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/version.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/synplot.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/functions.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/__init__.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/gfftools.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/rcparams.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/bamparse.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/rcparams.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/stats.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/version.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/gfftools.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/browser.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/custommargin.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__init__.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/pauvre_main.py to pauvre_main.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/marginplot.py to marginplot.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/synplot.py to synplot.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/test_synplot.py to test_synplot.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/redwood.py to redwood.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/T.py to T.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/Q.py to Q.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/lsi.py to lsi.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/test.py to test.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/helper.py to helper.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/bamparse.py to bamparse.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/rcparams.py to rcparams.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/functions.py to functions.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/stats.py to stats.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/version.py to version.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/gfftools.py to gfftools.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/browser.py to browser.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/custommargin.py to custommargin.cpython-311.pyc byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__init__.py to __init__.cpython-311.pyc running install_egg_info Copying pauvre.egg-info to /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre-0.2.3.egg-info Skipping SOURCES.txt running install_scripts Installing pauvre script to /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/python-pauvre-0.2.3' # Do not install test script in Python lib find debian -name scripts -type d | xargs rm -rf dh_installexamples sed -i 's/^git clone/#&/' `find debian -name test.sh` make[1]: Leaving directory '/build/python-pauvre-0.2.3' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pauvre' in '../python3-pauvre_0.2.3-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pauvre_0.2.3-2_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pauvre_0.2.3-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/21462 and its subdirectories I: Current time: Fri May 5 05:39:43 -12 2023 I: pbuilder-time-stamp: 1683308383 Fri May 5 17:39:51 UTC 2023 I: 1st build successful. Starting 2nd build on remote node virt64a-armhf-rb.debian.net. Fri May 5 17:39:51 UTC 2023 I: Preparing to do remote build '2' on virt64a-armhf-rb.debian.net. Fri May 5 18:02:01 UTC 2023 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. Fri May 5 18:02:03 UTC 2023 I: python-pauvre_0.2.3-2_armhf.changes: Format: 1.8 Date: Sun, 18 Dec 2022 15:56:49 +0100 Source: python-pauvre Binary: python3-pauvre Architecture: all Version: 0.2.3-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python3-pauvre - QC and genome browser plotting Oxford Nanopore and PacBio long re Closes: 1024835 Changes: python-pauvre (0.2.3-2) unstable; urgency=medium . * biopython-1.80.patch: add; migrate away from Bio.SubsMat. This patch fixes build time test failures with Biopython 1.80 caused by removal of Bio.SubsMat in favor of Bio.Align.substitution_matrices. (Closes: 1024835) * d/control: declare compliance to standards version 4.6.2. * d/copyright: update debian/ authors and year. Checksums-Sha1: 04ca8c069acda34c2b3ec64972f80b617a885679 8117 python-pauvre_0.2.3-2_armhf.buildinfo 554cc1a7bfdad6376bfb0b58e95ffed1555bac56 51660 python3-pauvre_0.2.3-2_all.deb Checksums-Sha256: f9a831f6ff82ebc31adc51e63bde0987066fd58d951a6dfa89e1283788220e0d 8117 python-pauvre_0.2.3-2_armhf.buildinfo cea4ef97543d593c9b5f9d0567236f29f0eda1be2d6a5ab50f07dd999556a05e 51660 python3-pauvre_0.2.3-2_all.deb Files: 00920b64ecf98b51e05dc3b47263cd68 8117 science optional python-pauvre_0.2.3-2_armhf.buildinfo c99886bd86a12011184a57c1c6e4df34 51660 python optional python3-pauvre_0.2.3-2_all.deb Fri May 5 18:02:08 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.KsgZZ8Ol/python-pauvre_0.2.3-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.KsgZZ8Ol/python-pauvre_0.2.3-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.KsgZZ8Ol/python-pauvre_0.2.3-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.KsgZZ8Ol/b1/python-pauvre_0.2.3-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.KsgZZ8Ol/b2/python-pauvre_0.2.3-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 6.161s) 6.161s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.662s) 0.661s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Fri May 5 18:04:20 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Fri May 5 18:04:20 UTC 2023 I: python-pauvre from bookworm built successfully and reproducibly on armhf. Fri May 5 18:04:23 UTC 2023 I: Submitting .buildinfo files to external archives: Fri May 5 18:04:23 UTC 2023 I: Submitting 12K b1/python-pauvre_0.2.3-2_armhf.buildinfo.asc Fri May 5 18:04:23 UTC 2023 I: Submitting 12K b2/python-pauvre_0.2.3-2_armhf.buildinfo.asc Fri May 5 18:04:24 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 5 18:04:24 UTC 2023 I: Done submitting .buildinfo files. Fri May 5 18:04:24 UTC 2023 I: Removing signed python-pauvre_0.2.3-2_armhf.buildinfo.asc files: removed './b1/python-pauvre_0.2.3-2_armhf.buildinfo.asc' removed './b2/python-pauvre_0.2.3-2_armhf.buildinfo.asc'