Sat May 6 09:16:27 UTC 2023 I: starting to build parasail/bookworm/armhf on jenkins on '2023-05-06 09:16' Sat May 6 09:16:27 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_44/1020/console.log Sat May 6 09:16:27 UTC 2023 I: Downloading source for bookworm/parasail=2.6+dfsg-1 --2023-05-06 09:16:28-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/parasail/parasail_2.6%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2342 (2.3K) [text/prs.lines.tag] Saving to: ‘parasail_2.6+dfsg-1.dsc’ 0K .. 100% 16.5M=0s 2023-05-06 09:16:28 (16.5 MB/s) - ‘parasail_2.6+dfsg-1.dsc’ saved [2342/2342] Sat May 6 09:16:28 UTC 2023 I: parasail_2.6+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: parasail Binary: libparasail-dev, libparasail8, parasail Architecture: any Version: 2.6+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra , Étienne Mollier Homepage: https://github.com/jeffdaily/parasail Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/parasail Vcs-Git: https://salsa.debian.org/med-team/parasail.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, libhts-dev, libsimde-dev Package-List: libparasail-dev deb libdevel optional arch=any libparasail8 deb libs optional arch=any parasail deb science optional arch=any Checksums-Sha1: 745567ec0bd53c345d9db6bd67dd9e9b9cbad9ac 1115888 parasail_2.6+dfsg.orig.tar.xz cda23a1596480184170883fb04e80400529c8368 50332 parasail_2.6+dfsg-1.debian.tar.xz Checksums-Sha256: c2013dbc9d5e95ddfd62abc8939a1aeaf8e257daba7f04b15cec1073bc87b155 1115888 parasail_2.6+dfsg.orig.tar.xz 8bf83f0b8bd8355df71dab7c5f4cdbdceaa0d800b5aca25f772b5137a88c51df 50332 parasail_2.6+dfsg-1.debian.tar.xz Files: 0eeb351ed781f80651546c8010bae2a4 1115888 parasail_2.6+dfsg.orig.tar.xz 03655feee9f489b3d79d99f32e69c502 50332 parasail_2.6+dfsg-1.debian.tar.xz Dgit: 5bd6b0cfe6110098dfd379c5d0870a975d96da79 debian archive/debian/2.6+dfsg-1 https://git.dgit.debian.org/parasail -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmMcY1kUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr3Qw/+MzLErRxdrksS+vgPPyQ67NICbWcp z/0M9rINc6nGW8fzUiA7VhqbWIgxq2bMyKnrGOlQv2iZzShsstdgGbkArJVA3Omq BSGaqAdyXO43WglVMREjQdppKXAd+W6+NP6NQVj24ECMYAn5CeubQ9WczhiTtb0K KiefWfNTZmYq50YQmcbMDyJJ5dZ37x86gkOKjMrMcHYh/tg5ZYM11FLxgL0armLC jMWsD7SzWzxOGlaXnAjio/m2VJOF/6l3FNXBshJXdINa4xwTyLn9DGuvjs56Rzem rlnmBGwGohRhNY+nUq86W3xzFkfzF6SS11oyCLnCvNl+oipqnMPJKNPmqMVNKXUF YZUJ6CQfTUiBLAkKxZq7JFRxhK9wzU1NPxFwVF6EgIOD/iqhvluEnTEvXmJWCWLt f3J6jX+AMfrvDINNWZrIFlzRaVQI2yd7/PkjTWVJx4QxNGhinu9C/CBDs1fOIOnZ ByCVK1JINpoDyU/ZJ6OQQ/j94yGPL/0ZqJspafjEMaaqSZF8GX0GysGpijpw2pER PVS6/aj9sp4qSJM+c7oN6WV2eMPUwaTvMxn8MnaHLlbA/xqBRuf25JLGsPLZhEnZ 6VNKPrTz50PaiDF74AxYstCyZhoSnbryKvTUEfuFodWnqUrz7TpNkdyTLsWNGFzz afTAefVttWwggxQ= =bg0/ -----END PGP SIGNATURE----- Sat May 6 09:16:28 UTC 2023 I: Checking whether the package is not for us Sat May 6 09:16:28 UTC 2023 I: Starting 1st build on remote node cbxi4pro0-armhf-rb.debian.net. Sat May 6 09:16:28 UTC 2023 I: Preparing to do remote build '1' on cbxi4pro0-armhf-rb.debian.net. Sat May 6 09:30:18 UTC 2023 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 5 21:16:37 -12 2023 I: pbuilder-time-stamp: 1683364597 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [parasail_2.6+dfsg-1.dsc] I: copying [./parasail_2.6+dfsg.orig.tar.xz] I: copying [./parasail_2.6+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Sep 9 22:13:45 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./parasail_2.6+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting parasail in parasail-2.6+dfsg dpkg-source: info: unpacking parasail_2.6+dfsg.orig.tar.xz dpkg-source: info: unpacking parasail_2.6+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-system-libs.patch dpkg-source: info: applying nonx86 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23959/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='efbe785456a14a2b8c1f0d8df9b68c30' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23959' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/pbuilderrc_0sWy --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/b1 --logfile b1/build.log parasail_2.6+dfsg-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4pro0 5.10.0-22-armmp #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux I: ls -l /bin total 5096 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/23959/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libhts-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 23.3 MB of archives. After unpacking 85.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf d-shlibs all 0.104 [18.6 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 22 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-9 [343 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libcurl4-gnutls-dev armhf 7.88.1-9 [448 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf libdeflate-dev armhf 1.14-1 [48.7 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf libhtscodecs2 armhf 1.3.0-4 [60.4 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libhts3 armhf 1.16+ds-3 [375 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf liblzma-dev armhf 5.4.1-0.2 [248 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libhts-dev armhf 1.16+ds-3 [1517 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libsimde-dev all 0.7.4~rc2-2 [377 kB] Fetched 23.3 MB in 2s (10.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up libnghttp2-14:armhf (1.52.0-1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up autopoint (0.21-12) ... Setting up d-shlibs (0.104) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:armhf (5.4.1-0.2) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up libdeflate-dev:armhf (1.14-1) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:armhf (7.88.1-9) ... Setting up libcurl4-gnutls-dev:armhf (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhts3:armhf (1.16+ds-3) ... Setting up libhts-dev:armhf (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/parasail-2.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../parasail_2.6+dfsg-1_source.changes dpkg-buildpackage: info: source package parasail dpkg-buildpackage: info: source version 2.6+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:13: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:13: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:13: the top level configure.ac:107: warning: The macro `AC_PROG_CC_C99' is obsolete. configure.ac:107: You should run autoupdate. ./lib/autoconf/c.m4:1659: AC_PROG_CC_C99 is expanded from... configure.ac:107: the top level configure.ac:107: installing 'build-aux/compile' configure.ac:76: installing 'build-aux/config.guess' configure.ac:76: installing 'build-aux/config.sub' configure.ac:68: installing 'build-aux/install-sh' configure.ac:68: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/parasail-2.6+dfsg' blhc: ignore-line-regexp: C(C|XX) : \.+ .* dh_auto_configure -- --disable-neon \ --enable-shared \ --disable-static ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-neon --enable-shared --disable-static checking whether make supports nested variables... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf configure: configure: C compiler configure: checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for C compiler vendor... gnu checking for a sed that does not truncate output... /bin/sed checking for C compiler version... 12.2.0 checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for malloc.h... yes checking for poll.h... yes checking for unistd.h... (cached) yes checking for windows.h... no checking for sys/mman.h... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for C/C++ restrict keyword... __restrict__ checking size of int... 4 checking for struct __stat64... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for size_t... yes checking for OpenMP flag of C compiler... -fopenmp checking for __builtin_cpu_init... no checking for __builtin_cpu_supports... no checking for SSE2 support... no checking for SSE2 _mm_set1_epi64x... no checking for SSE2 _mm_set_epi64x... no checking for SSE4.1 support... no checking for SSE4.1 _mm_insert_epi64... no checking for SSE4.1 _mm_extract_epi64... no checking for AVX2 support... no checking for AVX2 _mm256_set1_epi64x... no checking for AVX2 _mm256_set_epi64x... no checking for AVX2 _mm256_insert_epi64... no checking for AVX2 _mm256_insert_epi32... no checking for AVX2 _mm256_insert_epi16... no checking for AVX2 _mm256_insert_epi8... no checking for AVX2 _mm256_extract_epi64... no checking for AVX2 _mm256_extract_epi32... no checking for AVX2 _mm256_extract_epi16... no checking for AVX2 _mm256_extract_epi8... no checking for AVX512F support... no checking for AVX512BW support... no checking for AVX512VBMI support... no checking for xgetbv... no checking for AltiVec support... no checking for _aligned_malloc... no checking for aligned_alloc... yes checking for filelength... no checking for memalign... yes checking for memset... yes checking for poll... yes checking for posix_memalign... yes checking for getopt... yes checking for SetUnhandledExceptionFilter... no checking for _fstat64... no checking for _stat64... no checking for int64_t literal suffix... unknown checking for GetSystemTimeAsFileTime... no checking for clock_get_time... no checking for library containing clock_gettime... none required checking for clock_gettime CLOCK_MONOTONIC... no checking for clock_gettime CLOCK_REALTIME... no checking for library containing sqrt... -lm checking for zlib.h... yes checking for library containing gzopen... -lz checking for grep that handles long lines and -e... /bin/grep checking whether C compiler supports visibility flag... -fvisibility=hidden configure: configure: C++ compiler configure: checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for C++ compiler vendor... gnu checking for C++ compiler version... 12.2.0 checking for OpenMP flag of C++ compiler... -fopenmp checking for variadic macros... yes configure: configure: Libtool setup configure: checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking our pkgconfig libname... parasail-1 checking our pkgconfig version... 2.6.0 checking our pkgconfig_libdir... ${libdir}/pkgconfig expanded our pkgconfig_libdir... /usr/lib/arm-linux-gnueabihf/pkgconfig checking our pkgconfig_libfile... parasail-1.pc checking our package / suffix... Pairwise Sequence Alignment Library / checking our pkgconfig description... Pairwise Sequence Alignment Library checking our pkgconfig requires... checking our pkgconfig ext libs... -lparasail checking our pkgconfig cppflags... checking our pkgconfig ldflags... noninstalled pkgconfig -L /build/parasail-2.6+dfsg/src/.libs noninstalled pkgconfig -I /build/parasail-2.6+dfsg/. checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing parasail-1.pc commands config.status: creating parasail-1.pc.in config.status: creating parasail-1.pc config.status: creating parasail-1-uninstalled.pc config.status: creating parasail-1-uninstalled.sh -=-=-=-=-=-=-=-=-=-= Configuration Complete =-=-=-=-=-=-=-=-=-=-=- Configuration summary : parasail version : .................... 2.6.0 Host CPU : ............................ arm Host Vendor : ......................... unknown Host OS : ............................. linux-gnueabihf Toolchain : CC : .................................. gcc (gnu, 12.2.0) CXX : ................................. g++ (gnu, 12.2.0) Flags : CFLAGS : .............................. -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic CXXFLAGS : ............................ -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS : ............................ -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS : ............................. -Wl,-z,relro -Wl,-z,now LIBS : ................................ Intrinsics : SSE2 : ................................ auto (no) SSE2_CFLAGS : ......................... not supported SSE4.1 : .............................. auto (no) SSE41_CFLAGS : ........................ not supported AVX2 : ................................ auto (no) AVX2_CFLAGS : ......................... not supported AVX512 : .............................. auto (no) AVX512F_CFLAGS : ...................... not supported AVX512BW_CFLAGS : ..................... not supported AVX512VBMI_CFLAGS : ................... not supported Altivec : ............................. auto (no) ALTIVEC_CFLAGS : ...................... not supported ARM NEON : ............................ no NEON_CFLAGS : ......................... EXTRA_NEON_CFLAGS : ................... Dependencies : OPENMP_CFLAGS : ....................... -fopenmp OPENMP_CXXFLAGS : ..................... -fopenmp CLOCK_LIBS : .......................... MATH_LIBS : ........................... -lm Z_CFLAGS : ............................ Z_LIBS : .............................. -lz Installation directories : Program directory : ................... /usr/bin Library directory : ................... /usr/lib/arm-linux-gnueabihf Include directory : ................... /usr/include Pkgconfig directory : ................. /usr/lib/arm-linux-gnueabihf/pkgconfig Compiling some other packages against parasail may require the addition of '/usr/lib/arm-linux-gnueabihf/pkgconfig' to the PKG_CONFIG_PATH environment variable. make[1]: Leaving directory '/build/parasail-2.6+dfsg' dh_auto_build make -j3 make[1]: Entering directory '/build/parasail-2.6+dfsg' make all-am make[2]: Entering directory '/build/parasail-2.6+dfsg' gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o apps/parasail_stats.o apps/parasail_stats.c g++ -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o apps/parasail_aligner-parasail_aligner.o `test -f 'apps/parasail_aligner.cpp' || echo './'`apps/parasail_aligner.cpp gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o contrib/getMemorySize.o contrib/getMemorySize.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cigar.lo `test -f 'src/cigar.c' || echo './'`src/cigar.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/cigar.c -fPIC -DPIC -o src/.libs/libparasail_la-cigar.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cpuid.lo `test -f 'src/cpuid.c' || echo './'`src/cpuid.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/cpuid.c -fPIC -DPIC -o src/.libs/libparasail_la-cpuid.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-function_lookup.lo `test -f 'src/function_lookup.c' || echo './'`src/function_lookup.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/function_lookup.c -fPIC -DPIC -o src/.libs/libparasail_la-function_lookup.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-io.lo `test -f 'src/io.c' || echo './'`src/io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/io.c -fPIC -DPIC -o src/.libs/libparasail_la-io.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-isastubs.lo `test -f 'src/isastubs.c' || echo './'`src/isastubs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/isastubs.c -fPIC -DPIC -o src/.libs/libparasail_la-isastubs.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-matrix_lookup.lo `test -f 'src/matrix_lookup.c' || echo './'`src/matrix_lookup.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/matrix_lookup.c -fPIC -DPIC -o src/.libs/libparasail_la-matrix_lookup.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-memory.lo `test -f 'src/memory.c' || echo './'`src/memory.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/memory.c -fPIC -DPIC -o src/.libs/libparasail_la-memory.o In file included from /usr/include/c++/12/vector:70, from apps/parasail_aligner.cpp:52: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:425:22: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:437:30: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:439:26: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:519:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:538:26: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:554:30: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:556:26: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:425:22: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:437:30: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:439:26: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:519:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:538:26: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:554:30: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:556:26: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-parser.lo `test -f 'src/parser.c' || echo './'`src/parser.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/parser.c -fPIC -DPIC -o src/.libs/libparasail_la-parser.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-pssw.lo `test -f 'src/pssw.c' || echo './'`src/pssw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/pssw.c -fPIC -DPIC -o src/.libs/libparasail_la-pssw.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-time.lo `test -f 'src/time.c' || echo './'`src/time.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/time.c -fPIC -DPIC -o src/.libs/libparasail_la-time.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src 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src/.libs/libparasail_novec_la-sw_trace_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src 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contrib/sais-lite-lcp/sais.lo contrib/sais-lite-lcp/sais.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c contrib/sais-lite-lcp/sais.c -fPIC -DPIC -o contrib/sais-lite-lcp/.libs/sais.o /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec.la src/libparasail_novec_la-nw.lo src/libparasail_novec_la-sg.lo src/libparasail_novec_la-sw.lo src/libparasail_novec_la-nw_scan.lo src/libparasail_novec_la-sg_scan.lo src/libparasail_novec_la-sw_scan.lo src/libparasail_novec_la-nw_banded.lo src/libparasail_novec_la-nw_stats.lo src/libparasail_novec_la-sg_stats.lo src/libparasail_novec_la-sw_stats.lo src/libparasail_novec_la-nw_stats_scan.lo src/libparasail_novec_la-sg_stats_scan.lo src/libparasail_novec_la-sw_stats_scan.lo src/libparasail_novec_la-nw_trace.lo src/libparasail_novec_la-sg_trace.lo src/libparasail_novec_la-sw_trace.lo src/libparasail_novec_la-nw_trace_scan.lo src/libparasail_novec_la-sg_trace_scan.lo src/libparasail_novec_la-sw_trace_scan.lo libtool: link: ar cr .libs/libparasail_novec.a src/.libs/libparasail_novec_la-nw.o src/.libs/libparasail_novec_la-sg.o src/.libs/libparasail_novec_la-sw.o src/.libs/libparasail_novec_la-nw_scan.o src/.libs/libparasail_novec_la-sg_scan.o src/.libs/libparasail_novec_la-sw_scan.o src/.libs/libparasail_novec_la-nw_banded.o src/.libs/libparasail_novec_la-nw_stats.o src/.libs/libparasail_novec_la-sg_stats.o src/.libs/libparasail_novec_la-sw_stats.o src/.libs/libparasail_novec_la-nw_stats_scan.o src/.libs/libparasail_novec_la-sg_stats_scan.o src/.libs/libparasail_novec_la-sw_stats_scan.o src/.libs/libparasail_novec_la-nw_trace.o src/.libs/libparasail_novec_la-sg_trace.o src/.libs/libparasail_novec_la-sw_trace.o src/.libs/libparasail_novec_la-nw_trace_scan.o src/.libs/libparasail_novec_la-sg_trace_scan.o src/.libs/libparasail_novec_la-sw_trace_scan.o libtool: link: ranlib .libs/libparasail_novec.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec.la" && ln -s "../libparasail_novec.la" "libparasail_novec.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_table.la src/libparasail_novec_table_la-nw.lo src/libparasail_novec_table_la-sg.lo src/libparasail_novec_table_la-sw.lo src/libparasail_novec_table_la-nw_scan.lo src/libparasail_novec_table_la-sg_scan.lo src/libparasail_novec_table_la-sw_scan.lo src/libparasail_novec_table_la-nw_banded.lo src/libparasail_novec_table_la-nw_stats.lo src/libparasail_novec_table_la-sg_stats.lo src/libparasail_novec_table_la-sw_stats.lo src/libparasail_novec_table_la-nw_stats_scan.lo src/libparasail_novec_table_la-sg_stats_scan.lo src/libparasail_novec_table_la-sw_stats_scan.lo libtool: link: ar cr .libs/libparasail_novec_table.a src/.libs/libparasail_novec_table_la-nw.o src/.libs/libparasail_novec_table_la-sg.o src/.libs/libparasail_novec_table_la-sw.o src/.libs/libparasail_novec_table_la-nw_scan.o src/.libs/libparasail_novec_table_la-sg_scan.o src/.libs/libparasail_novec_table_la-sw_scan.o src/.libs/libparasail_novec_table_la-nw_banded.o src/.libs/libparasail_novec_table_la-nw_stats.o src/.libs/libparasail_novec_table_la-sg_stats.o src/.libs/libparasail_novec_table_la-sw_stats.o src/.libs/libparasail_novec_table_la-nw_stats_scan.o src/.libs/libparasail_novec_table_la-sg_stats_scan.o src/.libs/libparasail_novec_table_la-sw_stats_scan.o libtool: link: ranlib .libs/libparasail_novec_table.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec_table.la" && ln -s "../libparasail_novec_table.la" "libparasail_novec_table.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_rowcol.la src/libparasail_novec_rowcol_la-nw.lo src/libparasail_novec_rowcol_la-sg.lo src/libparasail_novec_rowcol_la-sw.lo src/libparasail_novec_rowcol_la-nw_scan.lo src/libparasail_novec_rowcol_la-sg_scan.lo src/libparasail_novec_rowcol_la-sw_scan.lo src/libparasail_novec_rowcol_la-nw_banded.lo src/libparasail_novec_rowcol_la-nw_stats.lo src/libparasail_novec_rowcol_la-sg_stats.lo src/libparasail_novec_rowcol_la-sw_stats.lo src/libparasail_novec_rowcol_la-nw_stats_scan.lo src/libparasail_novec_rowcol_la-sg_stats_scan.lo src/libparasail_novec_rowcol_la-sw_stats_scan.lo libtool: link: ar cr .libs/libparasail_novec_rowcol.a src/.libs/libparasail_novec_rowcol_la-nw.o src/.libs/libparasail_novec_rowcol_la-sg.o src/.libs/libparasail_novec_rowcol_la-sw.o src/.libs/libparasail_novec_rowcol_la-nw_scan.o src/.libs/libparasail_novec_rowcol_la-sg_scan.o src/.libs/libparasail_novec_rowcol_la-sw_scan.o src/.libs/libparasail_novec_rowcol_la-nw_banded.o src/.libs/libparasail_novec_rowcol_la-nw_stats.o src/.libs/libparasail_novec_rowcol_la-sg_stats.o src/.libs/libparasail_novec_rowcol_la-sw_stats.o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o libtool: link: ranlib .libs/libparasail_novec_rowcol.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec_rowcol.la" && ln -s "../libparasail_novec_rowcol.la" "libparasail_novec_rowcol.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -version-info 9:0:1 -Wl,-z,relro -Wl,-z,now -o libparasail.la -rpath /usr/lib/arm-linux-gnueabihf src/libparasail_la-cigar.lo src/libparasail_la-cpuid.lo src/libparasail_la-function_lookup.lo src/libparasail_la-io.lo src/libparasail_la-isastubs.lo src/libparasail_la-matrix_lookup.lo src/libparasail_la-memory.lo src/libparasail_la-parser.lo src/libparasail_la-pssw.lo src/libparasail_la-time.lo src/libparasail_la-nw_dispatch.lo src/libparasail_la-sg_dispatch.lo src/libparasail_la-sw_dispatch.lo src/libparasail_la-sg_qb_dispatch.lo src/libparasail_la-sg_qe_dispatch.lo src/libparasail_la-sg_qx_dispatch.lo src/libparasail_la-sg_db_dispatch.lo src/libparasail_la-sg_de_dispatch.lo src/libparasail_la-sg_dx_dispatch.lo src/libparasail_la-sg_qb_de_dispatch.lo src/libparasail_la-sg_qe_db_dispatch.lo src/libparasail_la-sg_qb_db_dispatch.lo src/libparasail_la-sg_qe_de_dispatch.lo src/libparasail_la-dispatch_profile.lo src/libparasail_la-satcheck.lo src/libparasail_la-striped_unwind.lo src/libparasail_la-traceback.lo libparasail_novec.la libparasail_novec_table.la libparasail_novec_rowcol.la -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/libsais.la contrib/sais-lite-lcp/sais.lo libtool: link: gcc -shared -fPIC -DPIC src/.libs/libparasail_la-cigar.o src/.libs/libparasail_la-cpuid.o src/.libs/libparasail_la-function_lookup.o src/.libs/libparasail_la-io.o src/.libs/libparasail_la-isastubs.o src/.libs/libparasail_la-matrix_lookup.o src/.libs/libparasail_la-memory.o src/.libs/libparasail_la-parser.o src/.libs/libparasail_la-pssw.o src/.libs/libparasail_la-time.o src/.libs/libparasail_la-nw_dispatch.o src/.libs/libparasail_la-sg_dispatch.o src/.libs/libparasail_la-sw_dispatch.o src/.libs/libparasail_la-sg_qb_dispatch.o src/.libs/libparasail_la-sg_qe_dispatch.o src/.libs/libparasail_la-sg_qx_dispatch.o src/.libs/libparasail_la-sg_db_dispatch.o src/.libs/libparasail_la-sg_de_dispatch.o src/.libs/libparasail_la-sg_dx_dispatch.o src/.libs/libparasail_la-sg_qb_de_dispatch.o src/.libs/libparasail_la-sg_qe_db_dispatch.o src/.libs/libparasail_la-sg_qb_db_dispatch.o src/.libs/libparasail_la-sg_qe_de_dispatch.o src/.libs/libparasail_la-dispatch_profile.o src/.libs/libparasail_la-satcheck.o src/.libs/libparasail_la-striped_unwind.o src/.libs/libparasail_la-traceback.o -Wl,--whole-archive ./.libs/libparasail_novec.a ./.libs/libparasail_novec_table.a ./.libs/libparasail_novec_rowcol.a -Wl,--no-whole-archive -lm -lz -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libparasail.so.8 -o .libs/libparasail.so.8.1.0 libtool: link: ar cr tests/.libs/libsais.a contrib/sais-lite-lcp/.libs/sais.o libtool: link: ranlib tests/.libs/libsais.a libtool: link: ( cd "tests/.libs" && rm -f "libsais.la" && ln -s "../libsais.la" "libsais.la" ) libtool: link: (cd ".libs" && rm -f "libparasail.so.8" && ln -s "libparasail.so.8.1.0" "libparasail.so.8") libtool: link: (cd ".libs" && rm -f "libparasail.so" && ln -s "libparasail.so.8.1.0" "libparasail.so") libtool: link: ( cd ".libs" && rm -f "libparasail.la" && ln -s "../libparasail.la" "libparasail.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o apps/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o libparasail.la tests/libsais.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o apps/parasail_stats apps/parasail_stats.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_stats apps/parasail_stats.o ./.libs/libparasail.so -lm -lz libtool: link: g++ -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o ./.libs/libparasail.so -lm -lz tests/.libs/libsais.a -fopenmp make[2]: Leaving directory '/build/parasail-2.6+dfsg' make[1]: Leaving directory '/build/parasail-2.6+dfsg' dh_auto_test make -j3 test "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 make[1]: Entering directory '/build/parasail-2.6+dfsg' make tests/traceback tests/test_align tests/test_basic tests/test_gcups tests/test_io tests/test_isa tests/test_matrix tests/test_pssm tests/test_query tests/test_sw_dispatch tests/test_verify tests/test_verify_tables tests/test_verify_rowcols tests/test_verify_traces tests/test_verify_cigars tests/test_12 tests/test_64 tests/test_p29 tests/test_p59 tests/libsais.la make[2]: Entering directory '/build/parasail-2.6+dfsg' make[2]: 'tests/libsais.la' is up to date. gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/traceback.o tests/traceback.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_align.o tests/test_align.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_basic.o tests/test_basic.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_gcups.o tests/test_gcups.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_io.o tests/test_io.c tests/test_io.c: In function 'main': tests/test_io.c:28:49: warning: passing argument 2 of 'parasail_sequences_pack' from incompatible pointer type [-Wincompatible-pointer-types] 28 | packed = parasail_sequences_pack(sequences, &packed_size); | ^~~~~~~~~~~~ | | | long unsigned int * In file included from tests/test_io.c:6: ./parasail/io.h:57:78: note: expected 'size_t *' {aka 'unsigned int *'} but argument is of type 'long unsigned int *' 57 | char* parasail_sequences_pack(const parasail_sequences_t *sequences, size_t *size); | ~~~~~~~~^~~~ gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_isa.o tests/test_isa.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_matrix.o tests/test_matrix.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_pssm.o tests/test_pssm.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_query-test_query.o `test -f 'tests/test_query.c' || echo './'`tests/test_query.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_sw_dispatch.o tests/test_sw_dispatch.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify-test_verify.o `test -f 'tests/test_verify.c' || echo './'`tests/test_verify.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_tables-test_verify_tables.o `test -f 'tests/test_verify_tables.c' || echo './'`tests/test_verify_tables.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_rowcols-test_verify_rowcols.o `test -f 'tests/test_verify_rowcols.c' || echo './'`tests/test_verify_rowcols.c tests/test_verify.c: In function 'main': tests/test_verify.c:310:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 310 | int do_neon = 1; | ^~~~~~~ tests/test_verify.c:309:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 309 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify.c:308:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 308 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify.c:307:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 307 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify.c:306:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 306 | int do_sse2 = 1; | ^~~~~~~ tests/test_verify_tables.c: In function 'main': tests/test_verify_tables.c:328:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 328 | int do_neon = 1; | ^~~~~~~ tests/test_verify_tables.c:327:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 327 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_tables.c:326:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 326 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_tables.c:325:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 325 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_tables.c:324:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 324 | int do_sse2 = 1; | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_traces-test_verify_traces.o `test -f 'tests/test_verify_traces.c' || echo './'`tests/test_verify_traces.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_cigars-test_verify_cigars.o `test -f 'tests/test_verify_cigars.c' || echo './'`tests/test_verify_cigars.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_12.o tests/test_12.c tests/test_verify_traces.c: In function 'check_functions': tests/test_verify_traces.c:180:37: warning: assignment to 'int8_t *' {aka 'signed char *'} from incompatible pointer type 'int *' [-Wincompatible-pointer-types] 180 | ref_trace_table = parasail_result_get_trace_table(reference_result); | ^ tests/test_verify_traces.c:193:69: warning: passing argument 4 of 'diff_array' from incompatible pointer type [-Wincompatible-pointer-types] 193 | if (diff_array(size_a, size_b, ref_trace_table, trace_table, result)) { | ^~~~~~~~~~~ | | | int * tests/test_verify_traces.c:83:17: note: expected 'int8_t *' {aka 'signed char *'} but argument is of type 'int *' 83 | int8_t *b_, | ~~~~~~~~^~ tests/test_verify_traces.c: In function 'main': tests/test_verify_traces.c:239:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 239 | int do_neon = 1; | ^~~~~~~ tests/test_verify_traces.c:238:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 238 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_traces.c:237:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 237 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_traces.c:236:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 236 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_traces.c:235:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 235 | int do_sse2 = 1; | ^~~~~~~ tests/test_verify_cigars.c: In function 'main': tests/test_verify_cigars.c:311:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 311 | int do_neon = 1; | ^~~~~~~ tests/test_verify_cigars.c:310:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 310 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_cigars.c:309:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 309 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_cigars.c:308:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 308 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_cigars.c:307:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 307 | int do_sse2 = 1; | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_64.o tests/test_64.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p29.o tests/test_p29.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p59.o tests/test_p59.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/traceback tests/traceback.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_align tests/test_align.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/traceback tests/traceback.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_align tests/test_align.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_basic tests/test_basic.o libparasail.la In file included from tests/test_p59.c:33: tests/test_p59.h: In function 'main': tests/test_p59.h:513:1: warning: string length '51025' is greater than the length '4095' ISO C99 compilers are required to support [-Woverlength-strings] 513 | "GAAAGTGACAGGGAGAATGGAACCA"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ tests/test_p59.h:1026:1: warning: string length '51024' is greater than the length '4095' ISO C99 compilers are required to support [-Woverlength-strings] 1026 | "AAAGTGACAGGGAGAATGGAACCA"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ tests/test_p59.c:39:31: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=] 39 | printf("s1_len=%d limit=%ld\n", s1_len, s1Limit); | ~~^ ~~~~~~~ | | | | long int int64_t {aka long long int} | %lld tests/test_p59.c:40:31: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=] 40 | printf("s2_len=%d limit=%ld\n", s2_len, s2Limit); | ~~^ ~~~~~~~ | | | | long int int64_t {aka long long int} | %lld /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_gcups tests/test_gcups.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_io tests/test_io.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_basic tests/test_basic.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_gcups tests/test_gcups.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_io tests/test_io.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_isa tests/test_isa.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_matrix tests/test_matrix.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_pssm tests/test_pssm.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_isa tests/test_isa.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_matrix tests/test_matrix.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_pssm tests/test_pssm.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_query tests/test_query-test_query.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_sw_dispatch tests/test_sw_dispatch.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify tests/test_verify-test_verify.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_query tests/test_query-test_query.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_sw_dispatch tests/test_sw_dispatch.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify tests/test_verify-test_verify.o ./.libs/libparasail.so -lm -lz -fopenmp /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_tables tests/test_verify_tables-test_verify_tables.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_traces tests/test_verify_traces-test_verify_traces.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_tables tests/test_verify_tables-test_verify_tables.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_traces tests/test_verify_traces-test_verify_traces.o ./.libs/libparasail.so -lm -lz -fopenmp /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_12 tests/test_12.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_64 tests/test_64.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_12 tests/test_12.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_64 tests/test_64.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p29 tests/test_p29.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p59 tests/test_p59.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p29 tests/test_p29.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p59 tests/test_p59.o ./.libs/libparasail.so -lm -lz make[2]: Leaving directory '/build/parasail-2.6+dfsg' make check-TESTS make[2]: Entering directory '/build/parasail-2.6+dfsg' make[3]: Entering directory '/build/parasail-2.6+dfsg' PASS: tests/test_basic PASS: tests/test_isa ============================================================================ Testsuite summary for Pairwise Sequence Alignment Library 2.6.0 ============================================================================ # TOTAL: 2 # PASS: 2 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory '/build/parasail-2.6+dfsg' make[2]: Leaving directory '/build/parasail-2.6+dfsg' make[1]: Leaving directory '/build/parasail-2.6+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/parasail-2.6\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/parasail-2.6+dfsg' make[2]: Entering directory '/build/parasail-2.6+dfsg' /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ./libtool --mode=install /usr/bin/install -c libparasail.la '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libparasail.so.8.1.0 /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8.1.0 libtool: install: (cd /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libparasail.so.8.1.0 libparasail.so.8 || { rm -f libparasail.so.8 && ln -s libparasail.so.8.1.0 libparasail.so.8; }; }) libtool: install: (cd /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libparasail.so.8.1.0 libparasail.so || { rm -f libparasail.so && ln -s libparasail.so.8.1.0 libparasail.so; }; }) libtool: install: /usr/bin/install -c .libs/libparasail.lai /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c apps/parasail_aligner apps/parasail_stats '/build/parasail-2.6+dfsg/debian/tmp/usr/bin' libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c apps/.libs/parasail_aligner /build/parasail-2.6+dfsg/debian/tmp/usr/bin/parasail_aligner libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c apps/.libs/parasail_stats /build/parasail-2.6+dfsg/debian/tmp/usr/bin/parasail_stats /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 parasail.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include' /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include' /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/install -c -m 644 parasail/matrices/blosum100.h parasail/matrices/blosum30.h parasail/matrices/blosum35.h parasail/matrices/blosum40.h parasail/matrices/blosum45.h parasail/matrices/blosum50.h parasail/matrices/blosum55.h parasail/matrices/blosum60.h parasail/matrices/blosum62.h parasail/matrices/blosum65.h parasail/matrices/blosum70.h parasail/matrices/blosum75.h parasail/matrices/blosum80.h parasail/matrices/blosum85.h parasail/matrices/blosum90.h parasail/matrices/blosum_map.h parasail/matrices/blosumn.h parasail/matrices/dnafull.h parasail/matrices/nuc44.h parasail/matrices/pam10.h parasail/matrices/pam100.h parasail/matrices/pam110.h parasail/matrices/pam120.h parasail/matrices/pam130.h parasail/matrices/pam140.h parasail/matrices/pam150.h parasail/matrices/pam160.h parasail/matrices/pam170.h parasail/matrices/pam180.h parasail/matrices/pam190.h parasail/matrices/pam20.h parasail/matrices/pam200.h parasail/matrices/pam210.h parasail/matrices/pam220.h parasail/matrices/pam230.h parasail/matrices/pam240.h parasail/matrices/pam250.h parasail/matrices/pam260.h parasail/matrices/pam270.h parasail/matrices/pam280.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices' /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail' /usr/bin/install -c -m 644 parasail/cpuid.h parasail/io.h parasail/function_lookup.h parasail/matrix_lookup.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail' /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/install -c -m 644 parasail/matrices/pam290.h parasail/matrices/pam30.h parasail/matrices/pam300.h parasail/matrices/pam310.h parasail/matrices/pam320.h parasail/matrices/pam330.h parasail/matrices/pam340.h parasail/matrices/pam350.h parasail/matrices/pam360.h parasail/matrices/pam370.h parasail/matrices/pam380.h parasail/matrices/pam390.h parasail/matrices/pam40.h parasail/matrices/pam400.h parasail/matrices/pam410.h parasail/matrices/pam420.h parasail/matrices/pam430.h parasail/matrices/pam440.h parasail/matrices/pam450.h parasail/matrices/pam460.h parasail/matrices/pam470.h parasail/matrices/pam480.h parasail/matrices/pam490.h parasail/matrices/pam50.h parasail/matrices/pam500.h parasail/matrices/pam60.h parasail/matrices/pam70.h parasail/matrices/pam80.h parasail/matrices/pam90.h parasail/matrices/pam_map.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices' /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 parasail-1.pc '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[2]: Leaving directory '/build/parasail-2.6+dfsg' make[1]: Leaving directory '/build/parasail-2.6+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/parasail-2.6+dfsg' dh_install cp `find .libs -name "libparasail*.a" | head -n1` \ debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.a d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" \ usr/lib/arm-linux-gnueabihf/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libparasail-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libparasail8/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.a debian/libparasail-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so debian/libparasail-dev/usr/lib/arm-linux-gnueabihf mv /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8 debian/libparasail8/usr/lib/arm-linux-gnueabihf mv /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8.1.0 debian/libparasail8/usr/lib/arm-linux-gnueabihf PKGDEV=libparasail-dev PKGSHL=libparasail8 install -d -m 755 debian/libparasail-dev/usr mv debian/tmp/usr/include debian/libparasail-dev/usr install -d -m 755 debian/libparasail-dev/usr/lib/arm-linux-gnueabihf/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libparasail-dev/usr/lib/arm-linux-gnueabihf/pkgconfig rm debian/libparasail-dev/usr/lib/arm-linux-gnueabihf/libparasail.a dh_install -p libparasail-dev .libs/*.a usr/lib/arm-linux-gnueabihf find debian -name "lib*.la" -delete make[1]: Leaving directory '/build/parasail-2.6+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/parasail-2.6+dfsg' dh_fixperms find debian -name "*.c" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/parasail-2.6+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package libparasail-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libparasail8-dbgsym' in '../libparasail8-dbgsym_2.6+dfsg-1_armhf.deb'. dpkg-deb: building package 'libparasail-dev' in '../libparasail-dev_2.6+dfsg-1_armhf.deb'. dpkg-deb: building package 'parasail-dbgsym' in '../parasail-dbgsym_2.6+dfsg-1_armhf.deb'. dpkg-deb: building package 'parasail' in '../parasail_2.6+dfsg-1_armhf.deb'. dpkg-deb: building package 'libparasail8' in '../libparasail8_2.6+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../parasail_2.6+dfsg-1_armhf.buildinfo dpkg-genchanges --build=binary -O../parasail_2.6+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23959 and its subdirectories I: Current time: Fri May 5 21:30:03 -12 2023 I: pbuilder-time-stamp: 1683365403 Sat May 6 09:30:20 UTC 2023 I: 1st build successful. Starting 2nd build on remote node jtx1c-armhf-rb.debian.net. Sat May 6 09:30:20 UTC 2023 I: Preparing to do remote build '2' on jtx1c-armhf-rb.debian.net. Sat May 6 09:34:27 UTC 2023 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net. Sat May 6 09:34:29 UTC 2023 I: parasail_2.6+dfsg-1_armhf.changes: Format: 1.8 Date: Thu, 08 Sep 2022 22:35:34 +0200 Source: parasail Binary: libparasail-dev libparasail8 libparasail8-dbgsym parasail parasail-dbgsym Architecture: armhf Version: 2.6+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libparasail-dev - Development heaaders and static libraries for parasail libparasail8 - Lib with various pairwise sequence alignment algorithms parasail - Aligner based on libparasail Changes: parasail (2.6+dfsg-1) unstable; urgency=medium . * New upstream version * d/control: add myself to uploaders. * Standards-Version: 4.6.1 (routine-update) * vectorization.patch: delete; applied upstream. * d/libparasail8.symbols.amd64: new symbols introduced. Checksums-Sha1: 9f71c2342c881b3c792df2dd9773e2f6f54e3c8e 178220 libparasail-dev_2.6+dfsg-1_armhf.deb cb6e520d877aea8ef3b5197eb7f8de38c2b56ab7 993800 libparasail8-dbgsym_2.6+dfsg-1_armhf.deb ebf30f6a7f264bfed9465b74f1238f9c43949602 345556 libparasail8_2.6+dfsg-1_armhf.deb dd69c27cd2e3c353c8bbf3a0f85a34f4612f20a9 293184 parasail-dbgsym_2.6+dfsg-1_armhf.deb dfaf5f974dcc9b86ce5cb0622c3127591f6aff30 6873 parasail_2.6+dfsg-1_armhf.buildinfo 7b1d12b48cea7c78a6328a3eb6321955c0debe26 56464 parasail_2.6+dfsg-1_armhf.deb Checksums-Sha256: a31a424c59a66c9453cb8460a34cd38f589515cd9f207d55f4990a380b5503b1 178220 libparasail-dev_2.6+dfsg-1_armhf.deb 7fb2fef706467783fcddcd4b983069d8f05139673f57bd25c8c6604e1aa1f081 993800 libparasail8-dbgsym_2.6+dfsg-1_armhf.deb abd24bd9db6d747c06bcce476ced3ab4bd0c40628a1be00051af5e6b455a8f33 345556 libparasail8_2.6+dfsg-1_armhf.deb df4acf18fbb366d9b0aa0cf0cebf103635ced1bbed2288c1c0b99976354c7946 293184 parasail-dbgsym_2.6+dfsg-1_armhf.deb a4af0ca48efcd57404f192e6ea0b1a895146985fd8a8530eda187c4f30515db4 6873 parasail_2.6+dfsg-1_armhf.buildinfo e16d8086c45099bdd96559d64dc511cd11913b0cabe10d04ea9ce10b7d4d92a1 56464 parasail_2.6+dfsg-1_armhf.deb Files: 51cd944bc6613e39b8dc608582bc5bd5 178220 libdevel optional libparasail-dev_2.6+dfsg-1_armhf.deb 6f9a2f6ea84ab102be3a336b67cc4160 993800 debug optional libparasail8-dbgsym_2.6+dfsg-1_armhf.deb 6c7fd7063cc9e6ffd958d9399c030048 345556 libs optional libparasail8_2.6+dfsg-1_armhf.deb 8e230758757f807de1ff64f03d0eb55d 293184 debug optional parasail-dbgsym_2.6+dfsg-1_armhf.deb 5b9ea3664d6216119e12bad0e1c2f0fc 6873 science optional parasail_2.6+dfsg-1_armhf.buildinfo 2299353d8375494305bd728ae138de56 56464 science optional parasail_2.6+dfsg-1_armhf.deb Sat May 6 09:34:30 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/parasail_2.6+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/parasail_2.6+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/parasail_2.6+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/b1/parasail_2.6+dfsg-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/b2/parasail_2.6+dfsg-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.396s) 0.396s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.094s) 0.094s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sat May 6 09:34:31 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Sat May 6 09:34:31 UTC 2023 I: parasail from bookworm built successfully and reproducibly on armhf. Sat May 6 09:34:34 UTC 2023 I: Submitting .buildinfo files to external archives: Sat May 6 09:34:34 UTC 2023 I: Submitting 8.0K b1/parasail_2.6+dfsg-1_armhf.buildinfo.asc Sat May 6 09:34:34 UTC 2023 I: Submitting 8.0K b2/parasail_2.6+dfsg-1_armhf.buildinfo.asc Sat May 6 09:34:35 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 6 09:34:35 UTC 2023 I: Done submitting .buildinfo files. Sat May 6 09:34:35 UTC 2023 I: Removing signed parasail_2.6+dfsg-1_armhf.buildinfo.asc files: removed './b1/parasail_2.6+dfsg-1_armhf.buildinfo.asc' removed './b2/parasail_2.6+dfsg-1_armhf.buildinfo.asc'