Mon May 1 17:29:16 UTC 2023 I: starting to build optimir/bookworm/armhf on jenkins on '2023-05-01 17:29' Mon May 1 17:29:16 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_18/8221/console.log Mon May 1 17:29:16 UTC 2023 I: Downloading source for bookworm/optimir=1.2-1 --2023-05-01 17:29:16-- http://cdn-fastly.deb.debian.org/debian/pool/main/o/optimir/optimir_1.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1984 (1.9K) [text/prs.lines.tag] Saving to: ‘optimir_1.2-1.dsc’ 0K . 100% 150M=0s 2023-05-01 17:29:16 (150 MB/s) - ‘optimir_1.2-1.dsc’ saved [1984/1984] Mon May 1 17:29:16 UTC 2023 I: optimir_1.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: optimir Binary: optimir Architecture: all Version: 1.2-1 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://github.com/FlorianThibord/OptimiR Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/optimir Vcs-Git: https://salsa.debian.org/med-team/optimir.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools Package-List: optimir deb science optional arch=all Checksums-Sha1: f5b0b31d4572ef7ae13df5720e4717251a7f7f16 1748155 optimir_1.2.orig.tar.gz fa713b693d170f487d25925182ad55d9d22f51b4 3476 optimir_1.2-1.debian.tar.xz Checksums-Sha256: de67c81c03ed3cb9faaba93388867faa8de57dfcada06544e6e762785545cb9b 1748155 optimir_1.2.orig.tar.gz 3bbcceb66d45a9f72d504791f4c162d6033ea48a9ded5a0acf40dfbac4af8340 3476 optimir_1.2-1.debian.tar.xz Files: 617473e1a1e467b85451c57c1875a86a 1748155 optimir_1.2.orig.tar.gz ae99593396619c23b7f71334d74b0765 3476 optimir_1.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEmjwHvQbeL0FugTpdYS7xYT4FD1QFAmI0nSoSHGRhaXNzaUBk ZWJpYW4ub3JnAAoJEGEu8WE+BQ9UapwP/2cFN5Iq+LJ7nX0BWz8F6FfqvXSVZ31G PiF6bQ5Q98cvbi1UQgEa1N0HenWCC09HjM5+MVln4kgcgoKF17yDqaHrmPFe7ic5 Trhny37b4039f3yBaHnYzvviq2XKmUnyg/b0vAp9uz0prK8TnBZhe8j5ftbgox4r zLzpBJ2oriq0e5U6eAn2Gfuh4Qw+kxCa2St+SGiDhtpQ161aUc3hdueh/gio0qIm 45Yq9JTRQesF0/4k3XcFSB5PhZFqn9sEnfkDF1b/4hVrtf3NyfYJcxtp7LI+IJM7 5QRSLOmdEOFfTVvlXCYkoPi6ePlVPfeaq6ZPSpjKtv10AKlif9eckmbxH0wgGImo 3prd+K/A7nR4l0akWBuvgxuFupIE4a19N3citPssKwVQxxTmm8jOKNU2Z2uZKuUU ziGDdPeIrGquYT1rKnVUY9X4z73O/OE2HmX7783H/lzkq8IBwjE/D0dSpZIrvYFI mgLun0ce81dOvkbKDtc4JdPJswl+THgIp+7miVxOs66byrUEVApPoDaUqw8dRImD Sw1pOIx8aItTTpcuebIXF7yvwMqAYeF7/xWd/RtRLx6k4XFl08imckPIz3kFR/HZ yANF1sAtOeviIpBB8MMoufD/vEhJKmVEjvSjAryejGZXgc9xBNy5D0Qk9htnpMXQ DCEa2qTyRVEj =T9wn -----END PGP SIGNATURE----- Mon May 1 17:29:16 UTC 2023 I: Checking whether the package is not for us Mon May 1 17:29:16 UTC 2023 I: Starting 1st build on remote node ff64a-armhf-rb.debian.net. Mon May 1 17:29:16 UTC 2023 I: Preparing to do remote build '1' on ff64a-armhf-rb.debian.net. Mon May 1 17:33:49 UTC 2023 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 1 05:29:24 -12 2023 I: pbuilder-time-stamp: 1682962164 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [optimir_1.2-1.dsc] I: copying [./optimir_1.2.orig.tar.gz] I: copying [./optimir_1.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Mar 18 02:54:34 2022 -12 gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./optimir_1.2-1.dsc: no acceptable signature found dpkg-source: info: extracting optimir in optimir-1.2 dpkg-source: info: unpacking optimir_1.2.orig.tar.gz dpkg-source: info: unpacking optimir_1.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10000/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='606747738cc3404884d81f5492dded63' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='10000' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pX2SY2CI/pbuilderrc_ZPv1 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pX2SY2CI/b1 --logfile b1/build.log optimir_1.2-1.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff64a 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/10000/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 24.3 MB of archives. After unpacking 92.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-2 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Fetched 24.3 MB in 2s (10.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19645 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_armhf.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../3-libreadline8_8.2-1.3_armhf.deb ... Unpacking libreadline8:armhf (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_armhf.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20079 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... 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Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-setuptools (66.1.1-1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/optimir-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../optimir_1.2-1_source.changes dpkg-buildpackage: info: source package optimir dpkg-buildpackage: info: source version 1.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir copying optimir/command_line.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir copying optimir/__init__.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir creating /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/read_collapser.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/summarize.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/process.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/mapping.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/get_counts.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/annotate.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/post_process.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/consistency.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/library_preparation.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/__init__.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/filter_reads.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/essentials.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/scoring.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/pre_process.py -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs running egg_info creating OptimiR.egg-info writing OptimiR.egg-info/PKG-INFO writing dependency_links to OptimiR.egg-info/dependency_links.txt writing entry points to OptimiR.egg-info/entry_points.txt writing requirements to OptimiR.egg-info/requires.txt writing top-level names to OptimiR.egg-info/top_level.txt writing manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'OptimiR.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'optimir.resources.coordinates' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.coordinates' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'optimir.resources.coordinates' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'optimir.resources.coordinates' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'optimir.resources.fasta' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.fasta' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'optimir.resources.fasta' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'optimir.resources.fasta' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources creating /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRBase_v21.gff3 -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRBase_v22.gff3 -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates creating /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRBase_v21.fa -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRBase_v22.fa -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa -> /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/optimir/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/optimir-1.2/debian/optimir running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing OptimiR.egg-info/PKG-INFO writing dependency_links to OptimiR.egg-info/dependency_links.txt writing entry points to OptimiR.egg-info/entry_points.txt writing requirements to OptimiR.egg-info/requires.txt writing top-level names to OptimiR.egg-info/top_level.txt reading manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'OptimiR.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'optimir.resources.coordinates' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.coordinates' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'optimir.resources.coordinates' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'optimir.resources.coordinates' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'optimir.resources.fasta' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.fasta' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'optimir.resources.fasta' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'optimir.resources.fasta' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running install_lib creating /build/optimir-1.2/debian/optimir/usr creating /build/optimir-1.2/debian/optimir/usr/lib creating /build/optimir-1.2/debian/optimir/usr/lib/python3.11 creating /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages creating /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir creating /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/read_collapser.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/summarize.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/process.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/mapping.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs creating /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/__pycache__ copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/__pycache__/__init__.cpython-311.pyc -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/__pycache__ copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/get_counts.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/annotate.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/post_process.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/consistency.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/library_preparation.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/__init__.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/filter_reads.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/essentials.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/scoring.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/pre_process.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs creating /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/__pycache__ copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/__pycache__/__init__.cpython-311.pyc -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/__pycache__ creating /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources creating /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/coordinates copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates/hsa_miRBase_v22.gff3 -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/coordinates copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/coordinates copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/coordinates copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates/hsa_miRBase_v21.gff3 -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/coordinates creating /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v21.fa -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v22.fa -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/command_line.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir copying /build/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/__init__.py -> /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/read_collapser.py to read_collapser.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/summarize.py to summarize.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/process.py to process.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/mapping.py to mapping.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/get_counts.py to get_counts.cpython-311.pyc /usr/lib/python3.11/dist-packages/optimir/libs/get_counts.py:453: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/annotate.py to annotate.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/post_process.py to post_process.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/consistency.py to consistency.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/library_preparation.py to library_preparation.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/__init__.py to __init__.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/filter_reads.py to filter_reads.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/essentials.py to essentials.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/scoring.py to scoring.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/pre_process.py to pre_process.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/command_line.py to command_line.cpython-311.pyc byte-compiling /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/__init__.py to __init__.cpython-311.pyc running install_egg_info Copying OptimiR.egg-info to /build/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/OptimiR-1.0.egg-info Skipping SOURCES.txt running install_scripts Installing optimir script to /build/optimir-1.2/debian/optimir/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/optimir-1.2' dh_installman debian/optimir.1 make[1]: Leaving directory '/build/optimir-1.2' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package optimir: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'optimir' in '../optimir_1.2-1_all.deb'. dpkg-genbuildinfo --build=binary -O../optimir_1.2-1_armhf.buildinfo dpkg-genchanges --build=binary -O../optimir_1.2-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10000 and its subdirectories I: Current time: Mon May 1 05:33:40 -12 2023 I: pbuilder-time-stamp: 1682962420 Mon May 1 17:33:51 UTC 2023 I: 1st build successful. Starting 2nd build on remote node virt32a-armhf-rb.debian.net. Mon May 1 17:33:51 UTC 2023 I: Preparing to do remote build '2' on virt32a-armhf-rb.debian.net. Mon May 1 17:37:30 UTC 2023 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. Mon May 1 17:37:32 UTC 2023 I: optimir_1.2-1_armhf.changes: Format: 1.8 Date: Fri, 18 Mar 2022 15:43:54 +0100 Source: optimir Binary: optimir Architecture: all Version: 1.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Dylan Aïssi Description: optimir - Integrating genetic variations in miRNA alignment Changes: optimir (1.2-1) unstable; urgency=medium . * New upstream version * Drop patch applied upstream Checksums-Sha1: 495ebc93bc070085eef0af768b26db4df215de45 1028652 optimir_1.2-1_all.deb c7dd2d66599ba14c398f2b80040fc80e26753b45 5240 optimir_1.2-1_armhf.buildinfo Checksums-Sha256: d163cf5fffcdb155dbad207488c52052f73bbe7a876e90e799378589625d7186 1028652 optimir_1.2-1_all.deb f733fc9fcf16fd7754496215824dd313be8c79ece3015868b1480c59d97738f8 5240 optimir_1.2-1_armhf.buildinfo Files: a96b419a9f9afbab53944811c9a71c5e 1028652 science optional optimir_1.2-1_all.deb 5fda3e99f642eb2094a277c528ff7bbd 5240 science optional optimir_1.2-1_armhf.buildinfo Mon May 1 17:37:33 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.pX2SY2CI/optimir_1.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.pX2SY2CI/optimir_1.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.pX2SY2CI/optimir_1.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.pX2SY2CI/b1/optimir_1.2-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.pX2SY2CI/b2/optimir_1.2-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.315s) 0.315s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.024s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon May 1 17:37:38 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Mon May 1 17:37:38 UTC 2023 I: optimir from bookworm built successfully and reproducibly on armhf. Mon May 1 17:37:39 UTC 2023 I: Submitting .buildinfo files to external archives: Mon May 1 17:37:39 UTC 2023 I: Submitting 8.0K b1/optimir_1.2-1_armhf.buildinfo.asc Mon May 1 17:37:41 UTC 2023 I: Submitting 8.0K b2/optimir_1.2-1_armhf.buildinfo.asc Mon May 1 17:37:42 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 1 17:37:42 UTC 2023 I: Done submitting .buildinfo files. Mon May 1 17:37:42 UTC 2023 I: Removing signed optimir_1.2-1_armhf.buildinfo.asc files: removed './b1/optimir_1.2-1_armhf.buildinfo.asc' removed './b2/optimir_1.2-1_armhf.buildinfo.asc'