Sun Jun 4 00:42:41 UTC 2023 I: starting to build mosdepth/bookworm/armhf on jenkins on '2023-06-04 00:42' Sun Jun 4 00:42:41 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_5/8328/console.log Sun Jun 4 00:42:41 UTC 2023 I: Downloading source for bookworm/mosdepth=0.3.3+ds-2 --2023-06-04 00:42:42-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/mosdepth/mosdepth_0.3.3%2bds-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2232 (2.2K) [text/prs.lines.tag] Saving to: ‘mosdepth_0.3.3+ds-2.dsc’ 0K .. 100% 296M=0s 2023-06-04 00:42:42 (296 MB/s) - ‘mosdepth_0.3.3+ds-2.dsc’ saved [2232/2232] Sun Jun 4 00:42:42 UTC 2023 I: mosdepth_0.3.3+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mosdepth Binary: mosdepth, mosdepth-examples Architecture: any all Version: 0.3.3+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra Homepage: https://github.com/brentp/mosdepth Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/mosdepth Vcs-Git: https://salsa.debian.org/med-team/mosdepth.git Testsuite: autopkgtest Testsuite-Triggers: libhts-dev, python3 Build-Depends: debhelper-compat (= 13), nim, nim-docopt-dev, nim-regex-dev, nim-hts-dev (>= 0.3.14+ds-2~), help2man, samtools, libhts-dev Package-List: mosdepth deb science optional arch=any mosdepth-examples deb science optional arch=all Checksums-Sha1: ec419b61d1316465c90caf044568b6dd4fe4e594 24556 mosdepth_0.3.3+ds.orig.tar.xz 4ed49004e3b241b49cde7c122adf3d034bfcd265 716420 mosdepth_0.3.3+ds-2.debian.tar.xz Checksums-Sha256: 4f87e6d7c992fc64bd63a2c255d7d9900d3adf47dee219c65141592c7b156bd3 24556 mosdepth_0.3.3+ds.orig.tar.xz 085a37d790364767b1ef1d5d3b62b7eeb4b05fc8dee8fecfd7095b230f1bf25c 716420 mosdepth_0.3.3+ds-2.debian.tar.xz Files: 84e61cb421dcdbe8d118e7bd7c2f7ca7 24556 mosdepth_0.3.3+ds.orig.tar.xz f6ffca6f05cee4ee293b8ae8dbe769c6 716420 mosdepth_0.3.3+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN/WdMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFlBA/+I1GwkNSno4EQmfe8AYyYajUpYOmxW/Un vWhL7s2q65wGsm7Uyq9SLoH0UgpLKJ7CgXbslAHiDuk5lqeUk3sEHzDnQB7RmRDo xEmpZ4e/VSNDDIAVDgs0i6xf2QCyXHkbw2Voiost9wRr28RNZOy6eIMyYV9RzWmf ShfbkiP/KbFl73WAriu3oUTkVjDbUvriF3akMt/5fWiLB2mbFtMpx2o0sql9syAy 7nBXvC72EYADgdgWPX6J1DL7EPX+bjm+QxOdZxmf1QrdWFXpQCcF/ER8OM0y+T5i LXNjYKXdA9EW7XvcH2gJEe9ZkIcEK1WgSzQe+7QiwufJHegrH60RXh9utpp7xNzr e9FEYPjYXdjbe23AbUZucQ+0osQjTCiCx/KjyVy9csAlCCOLUqIFfGIYj8MJIY6J WKIfGgYVj7NjPUgh67rbbEbx9aVKUljxhpeSMgjjL4oYAIlCyE7WoyeQe1Kjspsp GStxPNXwjvFtupD4n+MGx2tDZyJOuZuYN5I3ZWJUdAsg62dr1E/0kHnkxKhIBeW7 8MWMmI37JYEZ7hUj0TTUPfhNrkh7zrQ9wcqxFeyGY8V9LLqRTNXHIgxgaap2DjAX Qrt3tBYdHWWKCa8JYruR9fGmNdef49gCxNbAaAlvSR0NY3vHuGDrk49znGRDsXEG IMx7C0QsI7s= =mGUs -----END PGP SIGNATURE----- Sun Jun 4 00:42:42 UTC 2023 I: Checking whether the package is not for us Sun Jun 4 00:42:42 UTC 2023 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Sun Jun 4 00:42:42 UTC 2023 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Sun Jun 4 00:45:44 UTC 2023 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 3 12:42:53 -12 2023 I: pbuilder-time-stamp: 1685839373 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mosdepth_0.3.3+ds-2.dsc] I: copying [./mosdepth_0.3.3+ds.orig.tar.xz] I: copying [./mosdepth_0.3.3+ds-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 23 23:47:31 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mosdepth_0.3.3+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting mosdepth in mosdepth-0.3.3+ds dpkg-source: info: unpacking mosdepth_0.3.3+ds.orig.tar.xz dpkg-source: info: unpacking mosdepth_0.3.3+ds-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32273/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='224fc51d25ac4c8da9517df482cd9c61' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32273' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RuLJ9Y30/pbuilderrc_uaqw --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RuLJ9Y30/b1 --logfile b1/build.log mosdepth_0.3.3+ds-2.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/32273/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, nim-docopt-dev, nim-regex-dev, nim-hts-dev (>= 0.3.14+ds-2~), help2man, samtools, libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on nim-docopt-dev; however: Package nim-docopt-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-regex-dev; however: Package nim-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-hts-dev (>= 0.3.14+ds-2~); however: Package nim-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpcre3{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} nim{a} nim-docopt-dev{a} nim-hts-dev{a} nim-regex-dev{a} nim-unicodedb-dev{a} nim-unicodeplus-dev{a} po-debconf{a} samtools{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl git libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 28.5 MB of archives. After unpacking 98.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf liblocale-gettext-perl armhf 1.07-5 [14.9 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 22 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf help2man armhf 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-10 [343 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libcurl4-gnutls-dev armhf 7.88.1-10 [448 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf libdeflate-dev armhf 1.14-1 [48.7 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libhtscodecs2 armhf 1.3.0-4 [60.4 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf libhts3 armhf 1.16+ds-3 [375 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf liblzma-dev armhf 5.4.1-0.2 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libhts-dev armhf 1.16+ds-3 [1517 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libncurses6 armhf 6.4-4 [81.1 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libpcre3 armhf 2:8.39-15 [315 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf nim armhf 1.6.10-2 [3874 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf nim-unicodedb-dev all 0.9.0-2 [423 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf nim-unicodeplus-dev all 0.5.1-2 [5340 B] Get: 55 http://deb.debian.org/debian bookworm/main armhf nim-regex-dev all 0.17.0+ds-2 [41.2 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf nim-docopt-dev all 0.6.8-3 [10.6 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf nim-hts-dev all 0.3.19+ds-1 [35.7 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf samtools armhf 1.16.1-1 [575 kB] Fetched 28.5 MB in 1s (44.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. 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Setting up autotools-dev (20220109.1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.4-4) ... Setting up autopoint (0.21-12) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:armhf (5.4.1-0.2) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up nim (1.6.10-2) ... Setting up libdeflate-dev:armhf (1.14-1) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up nim-unicodeplus-dev (0.5.1-2) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up nim-hts-dev (0.3.19+ds-1) ... Setting up nim-regex-dev (0.17.0+ds-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up nim-docopt-dev (0.6.8-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:armhf (7.88.1-10) ... Setting up libcurl4-gnutls-dev:armhf (7.88.1-10) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhts3:armhf (1.16+ds-3) ... Setting up libhts-dev:armhf (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up samtools (1.16.1-1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/mosdepth-0.3.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mosdepth_0.3.3+ds-2_source.changes dpkg-buildpackage: info: source package mosdepth dpkg-buildpackage: info: source version 0.3.3+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mosdepth-0.3.3+ds' rm -f debian/mosdepth.1 rm -f mosdepth rm -rf nimcache rm -f tests/big.bam.csi rm -f tests/ovl.bam tests/ovl.bam.bai tests/overlapping-pairs.bam.bai tests/overlapping-pairs.bam tests/overlapping-pairs.bam tests/empty-tids.bam.bai tests/empty-tids.bam tests/big.bam tests/nanopore.bam tests/nanopore.bam.bai make[1]: Leaving directory '/build/mosdepth-0.3.3+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/mosdepth-0.3.3+ds' nim c --debuginfo:on -d:release -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/hts --nimcache:/build/mosdepth-0.3.3+ds/nimcache mosdepth.nim Hint: used config file '/etc/nim/nim.cfg' [Conf] Hint: used config file '/etc/nim/config.nims' [Conf] Hint: used config file '/build/mosdepth-0.3.3+ds/nim.cfg' [Conf] ....................................................................................................................................... /build/mosdepth-0.3.3+ds/depthstat.nim(21, 24) Warning: See corresponding Defect; IndexError is deprecated [Deprecated] /build/mosdepth-0.3.3+ds/mosdepth.nim(370, 9) template/generic instantiation of `add` from here /build/mosdepth-0.3.3+ds/depthstat.nim(21, 24) Warning: See corresponding Defect; IndexError is deprecated [Deprecated] /build/mosdepth-0.3.3+ds/mosdepth.nim(599, 15) Warning: open; wopen_bgzi is deprecated [Deprecated] /build/mosdepth-0.3.3+ds/mosdepth.nim(602, 17) Warning: open; wopen_bgzi is deprecated [Deprecated] /build/mosdepth-0.3.3+ds/mosdepth.nim(605, 19) Warning: open; wopen_bgzi is deprecated [Deprecated] /build/mosdepth-0.3.3+ds/mosdepth.nim(618, 15) Warning: open; wopen_bgzi is deprecated [Deprecated] /build/mosdepth-0.3.3+ds/mosdepth.nim(768, 22) Warning: use fileExists; existsFile is deprecated [Deprecated] /build/mosdepth-0.3.3+ds/mosdepth.nim(862, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args[""]; this will become a compile time error in the future [CStringConv] /build/mosdepth-0.3.3+ds/mosdepth.nim(542, 6) Hint: 'to_tuples' is declared but not used [XDeclaredButNotUsed] /build/mosdepth-0.3.3+ds/mosdepth.nim(9, 8) Warning: imported and not used: 'strformat' [UnusedImport] /build/mosdepth-0.3.3+ds/mosdepth.nim(11, 8) Warning: imported and not used: 'times' [UnusedImport] CC: ../../usr/lib/nim/lib/std/private/digitsutils.nim CC: ../../usr/lib/nim/lib/system/assertions.nim CC: ../../usr/lib/nim/lib/system/dollars.nim CC: ../../usr/lib/nim/lib/system/io.nim CC: ../../usr/lib/nim/lib/system.nim CC: ../../usr/share/nimble/hts/hts/private/hts_concat.nim CC: ../../usr/lib/nim/lib/pure/parseutils.nim CC: ../../usr/lib/nim/lib/pure/unicode.nim CC: ../../usr/lib/nim/lib/pure/math.nim CC: ../../usr/lib/nim/lib/pure/algorithm.nim CC: ../../usr/lib/nim/lib/pure/strutils.nim CC: ../../usr/lib/nim/lib/pure/strformat.nim CC: ../../usr/share/nimble/hts/hts/bam.nim CC: ../../usr/lib/nim/lib/pure/collections/sequtils.nim CC: ../../usr/share/nimble/hts/hts/vcf.nim CC: ../../usr/share/nimble/hts/hts/bgzf.nim CC: ../../usr/share/nimble/hts/hts/csi.nim CC: ../../usr/share/nimble/hts/hts/bgzf/bgzi.nim CC: ../../usr/share/nimble/hts/hts.nim CC: ../../usr/lib/nim/lib/pure/hashes.nim CC: ../../usr/lib/nim/lib/pure/collections/tables.nim CC: int2str.nim CC: ../../usr/lib/nim/lib/pure/times.nim CC: ../../usr/lib/nim/lib/pure/os.nim CC: ../../usr/lib/nim/lib/pure/collections/sets.nim CC: ../../usr/share/nimble/unicodedb/unicodedb/properties_data.nim CC: ../../usr/share/nimble/unicodedb/unicodedb/properties.nim CC: ../../usr/share/nimble/regex/regex/common.nim CC: ../../usr/share/nimble/regex/regex/nodetype.nim CC: ../../usr/share/nimble/regex/regex/exptransformation.nim CC: ../../usr/share/nimble/regex/regex/nfa.nim CC: ../../usr/share/nimble/unicodedb/unicodedb/types_data.nim CC: ../../usr/share/nimble/unicodedb/unicodedb/types.nim CC: ../../usr/share/nimble/unicodeplus/unicodeplus.nim CC: ../../usr/share/nimble/regex/regex/nodematch.nim CC: ../../usr/share/nimble/regex/regex/litopt.nim CC: ../../usr/share/nimble/regex/regex/nfatype.nim CC: ../../usr/share/nimble/regex/regex/nfafindall.nim CC: ../../usr/share/nimble/regex/regex/nfamatch.nim CC: ../../usr/share/nimble/docopt/docopt/util.nim CC: ../../usr/share/nimble/docopt/docopt.nim CC: depthstat.nim CC: mosdepth.nim Hint: [Link] Hint: gc: refc; opt: speed; options: -d:release 86637 lines; 35.996s; 119.441MiB peakmem; proj: /build/mosdepth-0.3.3+ds/mosdepth.nim; out: /build/mosdepth-0.3.3+ds/mosdepth [SuccessX] help2man --no-info --no-discard-stderr --help-option="-h" ./mosdepth > debian/mosdepth.1 rm -f tests/missing.bed for f in debian/missing-sources/*; do \ outp=tests/`echo $f | sed -e 's/sam/bam/' -e 's/debian\/missing\-sources\///'` ; \ cat $f | samtools view -Sb - > $outp ; \ if [ "$outp" = "tests/big.bam" ] ; then \ samtools index $outp -c ; \ continue ; \ fi ; \ samtools index $outp ; \ done make[1]: Leaving directory '/build/mosdepth-0.3.3+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing debian/rules override_dh_dwz make[1]: Entering directory '/build/mosdepth-0.3.3+ds' dh_dwz || true make[1]: Leaving directory '/build/mosdepth-0.3.3+ds' dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mosdepth' in '../mosdepth_0.3.3+ds-2_armhf.deb'. dpkg-deb: building package 'mosdepth-dbgsym' in '../mosdepth-dbgsym_0.3.3+ds-2_armhf.deb'. dpkg-deb: building package 'mosdepth-examples' in '../mosdepth-examples_0.3.3+ds-2_all.deb'. dpkg-genbuildinfo --build=binary -O../mosdepth_0.3.3+ds-2_armhf.buildinfo dpkg-genchanges --build=binary -O../mosdepth_0.3.3+ds-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32273 and its subdirectories I: Current time: Sat Jun 3 12:45:18 -12 2023 I: pbuilder-time-stamp: 1685839518 Sun Jun 4 00:45:50 UTC 2023 I: 1st build successful. Starting 2nd build on remote node cbxi4b-armhf-rb.debian.net. Sun Jun 4 00:45:50 UTC 2023 I: Preparing to do remote build '2' on cbxi4b-armhf-rb.debian.net. Sun Jun 4 00:52:13 UTC 2023 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net. Sun Jun 4 00:52:16 UTC 2023 I: mosdepth_0.3.3+ds-2_armhf.changes: Format: 1.8 Date: Thu, 24 Nov 2022 12:43:43 +0100 Source: mosdepth Binary: mosdepth mosdepth-dbgsym mosdepth-examples Architecture: armhf all Version: 0.3.3+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mosdepth - BAM/CRAM depth calculation biological sequencing mosdepth-examples - Test data for mosdepth Changes: mosdepth (0.3.3+ds-2) unstable; urgency=medium . * Team upload. * Fix watch file * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: ec0330510e43199fd6ea053f6ea8201942eb8d88 1185728 mosdepth-dbgsym_0.3.3+ds-2_armhf.deb abaef6c7a14183b7a38c9b12eb913c4129e99614 1019608 mosdepth-examples_0.3.3+ds-2_all.deb 69012d74a71f8446898ca7ccef28ee900b58b053 6293 mosdepth_0.3.3+ds-2_armhf.buildinfo 22e4a18005e598c5424b6208b6febf3837b88a11 143520 mosdepth_0.3.3+ds-2_armhf.deb Checksums-Sha256: 3990eb219a03ba25b7639ebd8a47c221941688132f4bd17b0d2a982e568e4dc2 1185728 mosdepth-dbgsym_0.3.3+ds-2_armhf.deb ff3f21c337eb3bfba13e1dca8a0aa25cf0fe1c1e16456a3db6707ecc4c28bca1 1019608 mosdepth-examples_0.3.3+ds-2_all.deb 82481e3829de505573ece1a87bf544a369c1f6421cd257b4cc4d853d548b8a67 6293 mosdepth_0.3.3+ds-2_armhf.buildinfo 7971e30a82729cfa1c92f3093419a90c46190855e6836cbd46d484007156ffe5 143520 mosdepth_0.3.3+ds-2_armhf.deb Files: c2d20fc716cdae714af70bf94a44a70c 1185728 debug optional mosdepth-dbgsym_0.3.3+ds-2_armhf.deb 595d7cacb824db31e7fb74632327358b 1019608 science optional mosdepth-examples_0.3.3+ds-2_all.deb a38bc80d45ad1e8803429f4df738d35a 6293 science optional mosdepth_0.3.3+ds-2_armhf.buildinfo 024c92be9a6ec6c6b4ff45c3d8a4b034 143520 science optional mosdepth_0.3.3+ds-2_armhf.deb Sun Jun 4 00:52:17 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RuLJ9Y30/mosdepth_0.3.3+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RuLJ9Y30/mosdepth_0.3.3+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RuLJ9Y30/mosdepth_0.3.3+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RuLJ9Y30/b1/mosdepth_0.3.3+ds-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.RuLJ9Y30/b2/mosdepth_0.3.3+ds-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.355s) 0.355s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.042s) 0.041s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun Jun 4 00:52:18 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Sun Jun 4 00:52:18 UTC 2023 I: mosdepth from bookworm built successfully and reproducibly on armhf. Sun Jun 4 00:52:19 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Jun 4 00:52:19 UTC 2023 I: Submitting 8.0K b1/mosdepth_0.3.3+ds-2_armhf.buildinfo.asc Sun Jun 4 00:52:23 UTC 2023 I: Submitting 8.0K b2/mosdepth_0.3.3+ds-2_armhf.buildinfo.asc Sun Jun 4 00:52:23 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jun 4 00:52:23 UTC 2023 I: Done submitting .buildinfo files. Sun Jun 4 00:52:23 UTC 2023 I: Removing signed mosdepth_0.3.3+ds-2_armhf.buildinfo.asc files: removed './b1/mosdepth_0.3.3+ds-2_armhf.buildinfo.asc' removed './b2/mosdepth_0.3.3+ds-2_armhf.buildinfo.asc'