Thu May 4 15:32:02 UTC 2023 I: starting to build gatk-bwamem/bookworm/armhf on jenkins on '2023-05-04 15:31' Thu May 4 15:32:02 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_45/704/console.log Thu May 4 15:32:03 UTC 2023 I: Downloading source for bookworm/gatk-bwamem=1.0.4+dfsg2-2 --2023-05-04 15:32:03-- http://cdn-fastly.deb.debian.org/debian/pool/main/g/gatk-bwamem/gatk-bwamem_1.0.4%2bdfsg2-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2498 (2.4K) [text/prs.lines.tag] Saving to: ‘gatk-bwamem_1.0.4+dfsg2-2.dsc’ 0K .. 100% 155M=0s 2023-05-04 15:32:03 (155 MB/s) - ‘gatk-bwamem_1.0.4+dfsg2-2.dsc’ saved [2498/2498] Thu May 4 15:32:03 UTC 2023 I: gatk-bwamem_1.0.4+dfsg2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gatk-bwamem Binary: libgatk-bwamem-java, libgatk-bwamem-jni Architecture: any all Version: 1.0.4+dfsg2-2 Maintainer: Debian Med Packaging Team Uploaders: Pierre Gruet Homepage: https://github.com/broadinstitute/gatk-bwamem-jni/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/gatk-bwamem Vcs-Git: https://salsa.debian.org/med-team/gatk-bwamem.git Build-Depends: debhelper-compat (= 13), default-jdk-headless, gradle-debian-helper, libsimde-dev, maven-repo-helper, testng , zlib1g-dev Package-List: libgatk-bwamem-java deb java optional arch=all libgatk-bwamem-jni deb java optional arch=any Checksums-Sha1: 514dfb2510d7c8d5d5f90707dc3f47dfeae7287b 144424 gatk-bwamem_1.0.4+dfsg2.orig-bwa-apache2.tar.xz c27d5ad7ee506407448891b75f3d155bd795dd47 21360 gatk-bwamem_1.0.4+dfsg2.orig.tar.xz 413473e386fb507bf3fc46cb907f2827810959c7 10192 gatk-bwamem_1.0.4+dfsg2-2.debian.tar.xz Checksums-Sha256: 954d5d5aae624ce0faa4c9c3d30e91490dd93ce41b2205d84042c3391d35093a 144424 gatk-bwamem_1.0.4+dfsg2.orig-bwa-apache2.tar.xz 767c56d136ab24f1fc0511b4a5dcf927ba0028fa140c61e97da10dd57291d798 21360 gatk-bwamem_1.0.4+dfsg2.orig.tar.xz f676a244bf21af37792aa73226cc2c34293eefc12b75c059440fd5b0f0cfb768 10192 gatk-bwamem_1.0.4+dfsg2-2.debian.tar.xz Files: d0b90d3400ed4ccc469367c4dfbd9bca 144424 gatk-bwamem_1.0.4+dfsg2.orig-bwa-apache2.tar.xz ed2b395e5416b1bf2b6902acedd61c80 21360 gatk-bwamem_1.0.4+dfsg2.orig.tar.xz bf67795fc6b9251f63160e6fcc771bfa 10192 gatk-bwamem_1.0.4+dfsg2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmLbhxAACgkQYAMWptwn dHZK0w/8DqkGS1fJYLfwKWBL6SckNDzSuKfDk5zGboK6PsHKXiaNRnDYanNUVe7U nErpIlKLH9fJVSYb8lCR8iQcEpeS0augnfBAQhoPAN5tJ8mXoHwlZQC3+Y/iwbHw /vKyIM5FsQWhSNycO78F3UysiEv8639zMU3+rbCvJnf6TBWJSNebuNnGbFJ9J6+3 jWtt8QSyN7mmynB4Uol2L/D7dRYQqddZ1h8mqXW+hF8tF+j0uJXPwZX+J/hAHuMM egPFmWqq23U+ol/lhYNyf46o/tkQt8s9sL+BdLWvEpMX84IUcnQ8zPW2XJlx0Eg2 jn/oRe1PNWnqBb77LG2VPKm/ABa+9Znz2b3BflYahQZw6mDxru3LlnGsTmSltQa0 3F6NYsryOtZAlSzSGPY4zGVYVwWEvQzmY9Rp2NqNdM0da0+5J4AStnDLVMWh+6LG q07sX4NPAPYxbc2P0PcnuSbOxT7i01UH0XO6KpiGpn+k8dPk7flRlTK0GyhYDeP/ hSkKW3M0nfPHuu2G1aJsEhnhSolOCiWYSMxNZ9IAzDomPimWFtv1MSgcvZvjwbd1 6fPp+gS3T8NKuhPhggcm+qBuym+nSpS0UlpmD9eWAdkpIGGnhVN/GFPGa3MRPOHc asf5UIBEnJ28UXIJ1wS9mTbm8DyBUl7pXghRL7IjKZ0qKvhiOZo= =tepv -----END PGP SIGNATURE----- Thu May 4 15:32:03 UTC 2023 I: Checking whether the package is not for us Thu May 4 15:32:03 UTC 2023 I: Starting 1st build on remote node jtx1c-armhf-rb.debian.net. Thu May 4 15:32:03 UTC 2023 I: Preparing to do remote build '1' on jtx1c-armhf-rb.debian.net. Thu May 4 15:38:07 UTC 2023 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 4 03:32:09 -12 2023 I: pbuilder-time-stamp: 1683214329 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [gatk-bwamem_1.0.4+dfsg2-2.dsc] I: copying [./gatk-bwamem_1.0.4+dfsg2.orig-bwa-apache2.tar.xz] I: copying [./gatk-bwamem_1.0.4+dfsg2.orig.tar.xz] I: copying [./gatk-bwamem_1.0.4+dfsg2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jul 22 17:28:48 2022 -12 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./gatk-bwamem_1.0.4+dfsg2-2.dsc: no acceptable signature found dpkg-source: info: extracting gatk-bwamem in gatk-bwamem-1.0.4+dfsg2 dpkg-source: info: unpacking gatk-bwamem_1.0.4+dfsg2.orig.tar.xz dpkg-source: info: unpacking gatk-bwamem_1.0.4+dfsg2.orig-bwa-apache2.tar.xz dpkg-source: info: unpacking gatk-bwamem_1.0.4+dfsg2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build.patch dpkg-source: info: applying use_bwa_from_component.patch dpkg-source: info: applying fix_heap_block_overrun dpkg-source: info: applying fix_build_on_freebsd.patch dpkg-source: info: applying CVE-2019-10269.patch dpkg-source: info: applying simde dpkg-source: info: applying gcc10.patch dpkg-source: info: applying hurd dpkg-source: info: applying hardening.patch dpkg-source: info: applying missing_obj_files.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10289/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='9d43237986f14b7b952a7de53d187e70' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='10289' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.s5N4baHo/pbuilderrc_sIbQ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.s5N4baHo/b1 --logfile b1/build.log gatk-bwamem_1.0.4+dfsg2-2.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux jtx1c 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/10289/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), default-jdk-headless, gradle-debian-helper, libsimde-dev, maven-repo-helper, testng, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-headless; however: Package default-jdk-headless is not installed. pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however: Package gradle-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on testng; however: Package testng is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-optional{a} antlr{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} intltool-debian{a} ivy{a} java-common{a} java-wrappers{a} junit4{a} libantlr-java{a} libaopalliance-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libasm-java{a} libasound2{a} libasound2-data{a} libatinject-jsr330-api-java{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbrotli1{a} libbsf-java{a} libbsh-java{a} libcdi-api-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libdbus-1-3{a} libdd-plist-java{a} libdebhelper-perl{a} libdom4j-java{a} libeclipse-jdt-annotation-java{a} libel-api-java{a} libelf1{a} liberror-prone-java{a} libexpat1{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libfile-stripnondeterminism-perl{a} libfindbugs-java{a} libfontconfig1{a} libfreetype6{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libglib2.0-0{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libgraphite2-3{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhawtjni-runtime-java{a} libhttpclient-java{a} libhttpcore-java{a} libicu72{a} libjansi-java{a} libjansi-native-java{a} libjansi1-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxen-java{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjetty9-java{a} libjformatstring-java{a} libjgit-java{a} libjline2-java{a} libjna-java{a} libjna-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjzlib-java{a} libkryo-java{a} liblcms2-2{a} liblogback-java{a} libmagic-mgc{a} libmagic1{a} libmaven-parent-java{a} libmaven-resolver-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libminlog-java{a} libnative-platform-java{a} libnative-platform-jni{a} libncurses6{a} libnekohtml-java{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpcsclite1{a} libpipeline1{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16{a} libpolyglot-maven-java{a} libqdox-java{a} libreflectasm-java{a} librhino-java{a} libservlet-api-java{a} libsimde-dev{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwebsocket-api-java{a} libxbean-reflect-java{a} libxerces2-java{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxstream-java{a} libxz-java{a} libyaml-snake-java{a} m4{a} man-db{a} maven-repo-helper{a} openjdk-17-jdk-headless{a} openjdk-17-jre-headless{a} openssl{a} po-debconf{a} sensible-utils{a} testng{a} unzip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus javascript-common libarchive-cpio-perl libbindex-java libglib2.0-data libgpars-groovy-java libgpm2 libltdl-dev libmail-sendmail-perl libreflectasm-java-doc lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 180 newly installed, 0 to remove and 0 not upgraded. Need to get 325 MB of archives. After unpacking 559 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf openssl armhf 3.0.8-1 [1373 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf ca-certificates all 20230311 [153 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf ca-certificates-java all 20230103 [11.4 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf java-common all 0.74 [6388 B] Get: 15 http://deb.debian.org/debian bookworm/main armhf libavahi-common-data armhf 0.8-10 [107 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf libavahi-common3 armhf 0.8-10 [38.3 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libdbus-1-3 armhf 1.14.6-1 [177 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf libavahi-client3 armhf 0.8-10 [41.6 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf libcups2 armhf 2.4.2-3 [209 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf liblcms2-2 armhf 2.14-2 [125 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf libnspr4 armhf 2:4.35-1 [91.5 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libnss3 armhf 2:3.87.1-1 [1122 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libasound2-data all 1.2.8-1 [20.5 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf libasound2 armhf 1.2.8-1+b1 [309 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libpcsclite1 armhf 1.9.9-2 [46.8 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf openjdk-17-jre-headless armhf 17.0.6+10-1 [38.1 MB] Get: 38 http://deb.debian.org/debian bookworm/main armhf default-jre-headless armhf 2:1.17-74 [2932 B] Get: 39 http://deb.debian.org/debian bookworm/main armhf ant all 1.10.13-1 [2161 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf ant-optional all 1.10.13-1 [449 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libantlr-java all 2.7.7+dfsg-12 [458 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf antlr all 2.7.7+dfsg-12 [14.3 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf unzip armhf 6.0-28 [152 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf java-wrappers all 0.4 [8916 B] Get: 50 http://deb.debian.org/debian bookworm/main armhf libhamcrest-java all 2.2-1 [121 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf junit4 all 4.13.2-3 [348 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libfelix-framework-java all 4.6.1-2.1 [569 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libfelix-gogo-runtime-java all 0.16.2-1.1 [114 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libosgi-annotation-java all 8.1.0-1 [9436 B] Get: 55 http://deb.debian.org/debian bookworm/main armhf libosgi-core-java all 8.0.0-2 [182 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libfelix-resolver-java all 1.16.0-1 [180 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libhawtjni-runtime-java all 1.18-1 [36.3 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libjansi-native-java all 1.8-1 [26.0 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libjansi1-java all 1.18-3 [66.5 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libjline2-java all 2.14.6-5 [151 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libosgi-compendium-java all 7.0.0-1 [477 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libslf4j-java all 1.7.32-1 [144 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libxz-java all 1.9-1 [143 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libyaml-snake-java all 1.33-2 [321 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf bnd all 5.0.1-3 [9915 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 71 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 73 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf openjdk-17-jdk-headless armhf 17.0.6+10-1 [176 MB] Get: 82 http://deb.debian.org/debian bookworm/main armhf default-jdk-headless armhf 2:1.17-74 [1108 B] Get: 83 http://deb.debian.org/debian bookworm/main armhf ivy all 2.5.1-2 [1288 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libasm-java all 9.4-1 [389 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libbsf-java all 1:2.4.0-8 [76.3 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf libcommons-cli-java all 1.5.0-1 [60.0 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf libapache-pom-java all 29-2 [5276 B] Get: 88 http://deb.debian.org/debian bookworm/main armhf libcommons-parent-java all 56-1 [10.8 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf libcommons-logging-java all 1.2-3 [62.4 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libjansi-java all 2.4.0-2 [105 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf libqdox-java all 1.12.1-3 [172 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf libxpp3-java all 1.1.4c-3 [292 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf libxstream-java all 1.4.20-1 [565 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf groovy all 2.4.21-7 [12.9 MB] Get: 96 http://deb.debian.org/debian bookworm/main armhf libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 97 http://deb.debian.org/debian bookworm/main armhf libcommons-collections3-java all 3.2.2-2 [526 kB] Get: 98 http://deb.debian.org/debian bookworm/main armhf libcommons-compress-java all 1.22-1 [615 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf libcommons-io-java all 2.11.0-2 [319 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf libcommons-lang-java all 2.6-10 [273 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf libguava-java all 31.1-1 [2613 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf libcommons-codec-java all 1.15-1 [292 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf libhttpcore-java all 4.4.16-1 [636 kB] Get: 106 http://deb.debian.org/debian bookworm/main armhf libhttpclient-java all 4.5.14-1 [1247 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf libjarjar-java all 1.4+svn142-12 [205 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf libjcip-annotations-java all 20060626-6 [11.8 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf libjna-jni armhf 5.13.0-2 [59.3 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf libjna-java all 5.13.0-2 [236 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf libjzlib-java all 1.1.3-2 [80.0 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf libjsch-java all 0.1.55-1 [298 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf libminlog-java all 1.3.0-1.1 [7928 B] Get: 114 http://deb.debian.org/debian bookworm/main armhf libobjenesis-java all 3.3-3 [41.3 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf libreflectasm-java all 1.11.9+dfsg-4 [25.0 kB] Get: 116 http://deb.debian.org/debian bookworm/main armhf libkryo-java all 2.20-7 [158 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf liblogback-java all 1:1.2.11-2 [700 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf libncurses6 armhf 6.4-2 [81.0 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf libnative-platform-jni armhf 0.14-5 [11.6 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf libnative-platform-java all 0.14-5 [71.0 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf libxml-commons-external-java all 1.4.01-5 [240 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf libxerces2-java all 2.12.2-1 [1440 kB] Get: 124 http://deb.debian.org/debian bookworm/main armhf libnekohtml-java all 1.9.22.noko2-0.1 [125 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf libxbean-reflect-java all 4.5-8 [133 kB] Get: 126 http://deb.debian.org/debian bookworm/main armhf libgradle-core-java all 4.4.1-18 [4286 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf libbcprov-java all 1.72-2 [8225 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf libbcpg-java all 1.72-2 [383 kB] Get: 129 http://deb.debian.org/debian bookworm/main armhf libbsh-java all 2.0b4-20 [291 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf libdd-plist-java all 1.20-1.1 [72.6 kB] Get: 131 http://deb.debian.org/debian bookworm/main armhf libjaxen-java all 1.1.6-4 [214 kB] Get: 132 http://deb.debian.org/debian bookworm/main armhf libdom4j-java all 2.1.3-2 [310 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf libbcel-java all 6.5.0-2 [634 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf libjformatstring-java all 0.10~20131207-2.1 [34.5 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf libfindbugs-java all 3.1.0~preview2-3 [3502 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf libgoogle-gson-java all 2.10-1 [261 kB] Get: 137 http://deb.debian.org/debian bookworm/main armhf libaopalliance-java all 20070526-7 [8572 B] Get: 138 http://deb.debian.org/debian bookworm/main armhf libguice-java all 4.2.3-2 [1435 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf libjatl-java all 0.2.3-1.1 [29.0 kB] Get: 140 http://deb.debian.org/debian bookworm/main armhf libjcifs-java all 1.3.19-2 [394 kB] Get: 141 http://deb.debian.org/debian bookworm/main armhf libeclipse-jdt-annotation-java all 2.2.700+eclipse4.26-2 [25.3 kB] Get: 142 http://deb.debian.org/debian bookworm/main armhf libjavaewah-java all 1.1.7-1 [156 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf libel-api-java all 3.0.0-3 [64.9 kB] Get: 144 http://deb.debian.org/debian bookworm/main armhf libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 145 http://deb.debian.org/debian bookworm/main armhf libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 146 http://deb.debian.org/debian bookworm/main armhf libjetty9-java all 9.4.50-3 [2962 kB] Get: 147 http://deb.debian.org/debian bookworm/main armhf libjgit-java all 4.11.9-2 [2534 kB] Get: 148 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 149 http://deb.debian.org/debian bookworm/main armhf libcommons-lang3-java all 3.12.0-2 [561 kB] Get: 150 http://deb.debian.org/debian bookworm/main armhf libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 151 http://deb.debian.org/debian bookworm/main armhf libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get: 152 http://deb.debian.org/debian bookworm/main armhf libmaven-resolver-java all 1.6.3-1 [548 kB] Get: 153 http://deb.debian.org/debian bookworm/main armhf libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 154 http://deb.debian.org/debian bookworm/main armhf libmaven-parent-java all 35-1 [6140 B] Get: 155 http://deb.debian.org/debian bookworm/main armhf libmaven-shared-utils-java all 3.3.4-1 [138 kB] Get: 156 http://deb.debian.org/debian bookworm/main armhf libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 157 http://deb.debian.org/debian bookworm/main armhf libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 158 http://deb.debian.org/debian bookworm/main armhf libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 159 http://deb.debian.org/debian bookworm/main armhf libplexus-interpolation-java all 1.26-1 [76.8 kB] Get: 160 http://deb.debian.org/debian bookworm/main armhf libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 161 http://deb.debian.org/debian bookworm/main armhf libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get: 162 http://deb.debian.org/debian bookworm/main armhf libcdi-api-java all 1.2-3 [54.3 kB] Get: 163 http://deb.debian.org/debian bookworm/main armhf libsisu-inject-java all 0.3.4-2 [347 kB] Get: 164 http://deb.debian.org/debian bookworm/main armhf libsisu-plexus-java all 0.3.4-3 [181 kB] Get: 165 http://deb.debian.org/debian bookworm/main armhf libmaven3-core-java all 3.8.7-1 [1572 kB] Get: 166 http://deb.debian.org/debian bookworm/main armhf libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 167 http://deb.debian.org/debian bookworm/main armhf libpolyglot-maven-java all 0.8~tobrien+git20120905-10 [74.9 kB] Get: 168 http://deb.debian.org/debian bookworm/main armhf librhino-java all 1.7.14-2.1 [1357 kB] Get: 169 http://deb.debian.org/debian bookworm/main armhf libsimple-http-java all 4.1.21-1.1 [211 kB] Get: 170 http://deb.debian.org/debian bookworm/main armhf libwagon-file-java all 3.5.3-1 [8388 B] Get: 171 http://deb.debian.org/debian bookworm/main armhf libjsoup-java all 1.15.3-1 [431 kB] Get: 172 http://deb.debian.org/debian bookworm/main armhf libwagon-http-java all 3.5.3-1 [49.5 kB] Get: 173 http://deb.debian.org/debian bookworm/main armhf libjcommander-java all 1.71-4 [73.0 kB] Get: 174 http://deb.debian.org/debian bookworm/main armhf testng all 6.9.12-4 [795 kB] Get: 175 http://deb.debian.org/debian bookworm/main armhf libgradle-plugins-java all 4.4.1-18 [5212 kB] Get: 176 http://deb.debian.org/debian bookworm/main armhf gradle all 4.4.1-18 [398 kB] Get: 177 http://deb.debian.org/debian bookworm/main armhf maven-repo-helper all 1.11 [142 kB] Get: 178 http://deb.debian.org/debian bookworm/main armhf gradle-debian-helper all 2.4 [24.5 kB] Get: 179 http://deb.debian.org/debian bookworm/main armhf libsimde-dev all 0.7.4~rc2-2 [377 kB] Get: 180 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Fetched 325 MB in 29s (11.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.0.8-1_armhf.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../004-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../007-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../009-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../010-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../012-ca-certificates-java_20230103_all.deb ... Unpacking ca-certificates-java (20230103) ... Selecting previously unselected package java-common. Preparing to unpack .../013-java-common_0.74_all.deb ... Unpacking java-common (0.74) ... Selecting previously unselected package libavahi-common-data:armhf. Preparing to unpack .../014-libavahi-common-data_0.8-10_armhf.deb ... Unpacking libavahi-common-data:armhf (0.8-10) ... Selecting previously unselected package libavahi-common3:armhf. Preparing to unpack .../015-libavahi-common3_0.8-10_armhf.deb ... Unpacking libavahi-common3:armhf (0.8-10) ... Selecting previously unselected package libdbus-1-3:armhf. Preparing to unpack .../016-libdbus-1-3_1.14.6-1_armhf.deb ... Unpacking libdbus-1-3:armhf (1.14.6-1) ... Selecting previously unselected package libavahi-client3:armhf. Preparing to unpack .../017-libavahi-client3_0.8-10_armhf.deb ... Unpacking libavahi-client3:armhf (0.8-10) ... Selecting previously unselected package libcups2:armhf. Preparing to unpack .../018-libcups2_2.4.2-3_armhf.deb ... Unpacking libcups2:armhf (2.4.2-3) ... Selecting previously unselected package liblcms2-2:armhf. Preparing to unpack .../019-liblcms2-2_2.14-2_armhf.deb ... Unpacking liblcms2-2:armhf (2.14-2) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../020-libjpeg62-turbo_1%3a2.1.5-2_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.1.5-2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../021-libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../022-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../023-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../024-libfreetype6_2.12.1+dfsg-5_armhf.deb ... Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../025-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../026-fontconfig-config_2.14.1-4_armhf.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../027-libfontconfig1_2.14.1-4_armhf.deb ... Unpacking libfontconfig1:armhf (2.14.1-4) ... Selecting previously unselected package libnspr4:armhf. Preparing to unpack .../028-libnspr4_2%3a4.35-1_armhf.deb ... Unpacking libnspr4:armhf (2:4.35-1) ... Selecting previously unselected package libnss3:armhf. Preparing to unpack .../029-libnss3_2%3a3.87.1-1_armhf.deb ... Unpacking libnss3:armhf (2:3.87.1-1) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../030-libasound2-data_1.2.8-1_all.deb ... Unpacking libasound2-data (1.2.8-1) ... Selecting previously unselected package libasound2:armhf. Preparing to unpack .../031-libasound2_1.2.8-1+b1_armhf.deb ... Unpacking libasound2:armhf (1.2.8-1+b1) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../032-libglib2.0-0_2.74.6-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.74.6-2) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../033-libgraphite2-3_1.3.14-1_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../034-libharfbuzz0b_6.0.0+dfsg-3_armhf.deb ... Unpacking libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Selecting previously unselected package libpcsclite1:armhf. Preparing to unpack .../035-libpcsclite1_1.9.9-2_armhf.deb ... Unpacking libpcsclite1:armhf (1.9.9-2) ... Selecting previously unselected package openjdk-17-jre-headless:armhf. Preparing to unpack .../036-openjdk-17-jre-headless_17.0.6+10-1_armhf.deb ... Unpacking openjdk-17-jre-headless:armhf (17.0.6+10-1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../037-default-jre-headless_2%3a1.17-74_armhf.deb ... Unpacking default-jre-headless (2:1.17-74) ... Selecting previously unselected package ant. Preparing to unpack .../038-ant_1.10.13-1_all.deb ... Unpacking ant (1.10.13-1) ... Selecting previously unselected package ant-optional. Preparing to unpack .../039-ant-optional_1.10.13-1_all.deb ... Unpacking ant-optional (1.10.13-1) ... Selecting previously unselected package libantlr-java. Preparing to unpack .../040-libantlr-java_2.7.7+dfsg-12_all.deb ... Unpacking libantlr-java (2.7.7+dfsg-12) ... Selecting previously unselected package antlr. Preparing to unpack .../041-antlr_2.7.7+dfsg-12_all.deb ... Unpacking antlr (2.7.7+dfsg-12) ... Selecting previously unselected package m4. Preparing to unpack .../042-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../043-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../044-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../045-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../046-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package unzip. Preparing to unpack .../047-unzip_6.0-28_armhf.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package java-wrappers. Preparing to unpack .../048-java-wrappers_0.4_all.deb ... Unpacking java-wrappers (0.4) ... Selecting previously unselected package libhamcrest-java. Preparing to unpack .../049-libhamcrest-java_2.2-1_all.deb ... Unpacking libhamcrest-java (2.2-1) ... Selecting previously unselected package junit4. Preparing to unpack .../050-junit4_4.13.2-3_all.deb ... Unpacking junit4 (4.13.2-3) ... Selecting previously unselected package libfelix-framework-java. Preparing to unpack .../051-libfelix-framework-java_4.6.1-2.1_all.deb ... Unpacking libfelix-framework-java (4.6.1-2.1) ... Selecting previously unselected package libfelix-gogo-runtime-java. Preparing to unpack .../052-libfelix-gogo-runtime-java_0.16.2-1.1_all.deb ... Unpacking libfelix-gogo-runtime-java (0.16.2-1.1) ... Selecting previously unselected package libosgi-annotation-java. Preparing to unpack .../053-libosgi-annotation-java_8.1.0-1_all.deb ... Unpacking libosgi-annotation-java (8.1.0-1) ... Selecting previously unselected package libosgi-core-java. Preparing to unpack .../054-libosgi-core-java_8.0.0-2_all.deb ... Unpacking libosgi-core-java (8.0.0-2) ... Selecting previously unselected package libfelix-resolver-java. Preparing to unpack .../055-libfelix-resolver-java_1.16.0-1_all.deb ... Unpacking libfelix-resolver-java (1.16.0-1) ... Selecting previously unselected package libhawtjni-runtime-java. Preparing to unpack .../056-libhawtjni-runtime-java_1.18-1_all.deb ... Unpacking libhawtjni-runtime-java (1.18-1) ... Selecting previously unselected package libjansi-native-java. Preparing to unpack .../057-libjansi-native-java_1.8-1_all.deb ... Unpacking libjansi-native-java (1.8-1) ... Selecting previously unselected package libjansi1-java. Preparing to unpack .../058-libjansi1-java_1.18-3_all.deb ... Unpacking libjansi1-java (1.18-3) ... Selecting previously unselected package libjline2-java. Preparing to unpack .../059-libjline2-java_2.14.6-5_all.deb ... Unpacking libjline2-java (2.14.6-5) ... Selecting previously unselected package libosgi-compendium-java. Preparing to unpack .../060-libosgi-compendium-java_7.0.0-1_all.deb ... Unpacking libosgi-compendium-java (7.0.0-1) ... Selecting previously unselected package libslf4j-java. Preparing to unpack .../061-libslf4j-java_1.7.32-1_all.deb ... Unpacking libslf4j-java (1.7.32-1) ... Selecting previously unselected package libxz-java. Preparing to unpack .../062-libxz-java_1.9-1_all.deb ... Unpacking libxz-java (1.9-1) ... Selecting previously unselected package libyaml-snake-java. Preparing to unpack .../063-libyaml-snake-java_1.33-2_all.deb ... Unpacking libyaml-snake-java (1.33-2) ... Selecting previously unselected package bnd. Preparing to unpack .../064-bnd_5.0.1-3_all.deb ... Unpacking bnd (5.0.1-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../065-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../066-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../067-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../068-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../069-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../070-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../071-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../072-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../073-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../074-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../075-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../076-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../077-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../078-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../079-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package openjdk-17-jdk-headless:armhf. Preparing to unpack .../080-openjdk-17-jdk-headless_17.0.6+10-1_armhf.deb ... Unpacking openjdk-17-jdk-headless:armhf (17.0.6+10-1) ... Selecting previously unselected package default-jdk-headless. Preparing to unpack .../081-default-jdk-headless_2%3a1.17-74_armhf.deb ... Unpacking default-jdk-headless (2:1.17-74) ... Selecting previously unselected package ivy. Preparing to unpack .../082-ivy_2.5.1-2_all.deb ... Unpacking ivy (2.5.1-2) ... Selecting previously unselected package libasm-java. Preparing to unpack .../083-libasm-java_9.4-1_all.deb ... Unpacking libasm-java (9.4-1) ... Selecting previously unselected package libbsf-java. Preparing to unpack .../084-libbsf-java_1%3a2.4.0-8_all.deb ... Unpacking libbsf-java (1:2.4.0-8) ... Selecting previously unselected package libcommons-cli-java. Preparing to unpack .../085-libcommons-cli-java_1.5.0-1_all.deb ... Unpacking libcommons-cli-java (1.5.0-1) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../086-libapache-pom-java_29-2_all.deb ... Unpacking libapache-pom-java (29-2) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../087-libcommons-parent-java_56-1_all.deb ... Unpacking libcommons-parent-java (56-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../088-libcommons-logging-java_1.2-3_all.deb ... Unpacking libcommons-logging-java (1.2-3) ... Selecting previously unselected package libjansi-java. Preparing to unpack .../089-libjansi-java_2.4.0-2_all.deb ... Unpacking libjansi-java (2.4.0-2) ... Selecting previously unselected package libqdox-java. Preparing to unpack .../090-libqdox-java_1.12.1-3_all.deb ... Unpacking libqdox-java (1.12.1-3) ... Selecting previously unselected package libservlet-api-java. Preparing to unpack .../091-libservlet-api-java_4.0.1-2_all.deb ... Unpacking libservlet-api-java (4.0.1-2) ... Selecting previously unselected package libxpp3-java. Preparing to unpack .../092-libxpp3-java_1.1.4c-3_all.deb ... Unpacking libxpp3-java (1.1.4c-3) ... Selecting previously unselected package libxstream-java. Preparing to unpack .../093-libxstream-java_1.4.20-1_all.deb ... Unpacking libxstream-java (1.4.20-1) ... Selecting previously unselected package groovy. Preparing to unpack .../094-groovy_2.4.21-7_all.deb ... Unpacking groovy (2.4.21-7) ... Selecting previously unselected package libatinject-jsr330-api-java. Preparing to unpack .../095-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libcommons-collections3-java. Preparing to unpack .../096-libcommons-collections3-java_3.2.2-2_all.deb ... Unpacking libcommons-collections3-java (3.2.2-2) ... Selecting previously unselected package libcommons-compress-java. Preparing to unpack .../097-libcommons-compress-java_1.22-1_all.deb ... Unpacking libcommons-compress-java (1.22-1) ... Selecting previously unselected package libcommons-io-java. Preparing to unpack .../098-libcommons-io-java_2.11.0-2_all.deb ... Unpacking libcommons-io-java (2.11.0-2) ... Selecting previously unselected package libcommons-lang-java. Preparing to unpack .../099-libcommons-lang-java_2.6-10_all.deb ... Unpacking libcommons-lang-java (2.6-10) ... Selecting previously unselected package liberror-prone-java. Preparing to unpack .../100-liberror-prone-java_2.18.0-1_all.deb ... Unpacking liberror-prone-java (2.18.0-1) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../101-libjsr305-java_0.1~+svn49-11_all.deb ... Unpacking libjsr305-java (0.1~+svn49-11) ... Selecting previously unselected package libguava-java. Preparing to unpack .../102-libguava-java_31.1-1_all.deb ... Unpacking libguava-java (31.1-1) ... Selecting previously unselected package libcommons-codec-java. Preparing to unpack .../103-libcommons-codec-java_1.15-1_all.deb ... Unpacking libcommons-codec-java (1.15-1) ... Selecting previously unselected package libhttpcore-java. Preparing to unpack .../104-libhttpcore-java_4.4.16-1_all.deb ... Unpacking libhttpcore-java (4.4.16-1) ... Selecting previously unselected package libhttpclient-java. Preparing to unpack .../105-libhttpclient-java_4.5.14-1_all.deb ... Unpacking libhttpclient-java (4.5.14-1) ... Selecting previously unselected package libjarjar-java. Preparing to unpack .../106-libjarjar-java_1.4+svn142-12_all.deb ... Unpacking libjarjar-java (1.4+svn142-12) ... Selecting previously unselected package libjcip-annotations-java. Preparing to unpack .../107-libjcip-annotations-java_20060626-6_all.deb ... Unpacking libjcip-annotations-java (20060626-6) ... Selecting previously unselected package libjna-jni. Preparing to unpack .../108-libjna-jni_5.13.0-2_armhf.deb ... Unpacking libjna-jni (5.13.0-2) ... Selecting previously unselected package libjna-java. Preparing to unpack .../109-libjna-java_5.13.0-2_all.deb ... Unpacking libjna-java (5.13.0-2) ... Selecting previously unselected package libjzlib-java. Preparing to unpack .../110-libjzlib-java_1.1.3-2_all.deb ... Unpacking libjzlib-java (1.1.3-2) ... Selecting previously unselected package libjsch-java. Preparing to unpack .../111-libjsch-java_0.1.55-1_all.deb ... Unpacking libjsch-java (0.1.55-1) ... Selecting previously unselected package libminlog-java. Preparing to unpack .../112-libminlog-java_1.3.0-1.1_all.deb ... Unpacking libminlog-java (1.3.0-1.1) ... Selecting previously unselected package libobjenesis-java. Preparing to unpack .../113-libobjenesis-java_3.3-3_all.deb ... Unpacking libobjenesis-java (3.3-3) ... Selecting previously unselected package libreflectasm-java. Preparing to unpack .../114-libreflectasm-java_1.11.9+dfsg-4_all.deb ... Unpacking libreflectasm-java (1.11.9+dfsg-4) ... Selecting previously unselected package libkryo-java. Preparing to unpack .../115-libkryo-java_2.20-7_all.deb ... Unpacking libkryo-java (2.20-7) ... Selecting previously unselected package liblogback-java. Preparing to unpack .../116-liblogback-java_1%3a1.2.11-2_all.deb ... Unpacking liblogback-java (1:1.2.11-2) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../117-libncurses6_6.4-2_armhf.deb ... Unpacking libncurses6:armhf (6.4-2) ... Selecting previously unselected package libnative-platform-jni. Preparing to unpack .../118-libnative-platform-jni_0.14-5_armhf.deb ... Unpacking libnative-platform-jni (0.14-5) ... Selecting previously unselected package libnative-platform-java. Preparing to unpack .../119-libnative-platform-java_0.14-5_all.deb ... Unpacking libnative-platform-java (0.14-5) ... Selecting previously unselected package libxml-commons-external-java. Preparing to unpack .../120-libxml-commons-external-java_1.4.01-5_all.deb ... Unpacking libxml-commons-external-java (1.4.01-5) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Preparing to unpack .../121-libxml-commons-resolver1.1-java_1.2-11_all.deb ... Unpacking libxml-commons-resolver1.1-java (1.2-11) ... Selecting previously unselected package libxerces2-java. Preparing to unpack .../122-libxerces2-java_2.12.2-1_all.deb ... Unpacking libxerces2-java (2.12.2-1) ... Selecting previously unselected package libnekohtml-java. Preparing to unpack .../123-libnekohtml-java_1.9.22.noko2-0.1_all.deb ... Unpacking libnekohtml-java (1.9.22.noko2-0.1) ... Selecting previously unselected package libxbean-reflect-java. Preparing to unpack .../124-libxbean-reflect-java_4.5-8_all.deb ... Unpacking libxbean-reflect-java (4.5-8) ... Selecting previously unselected package libgradle-core-java. Preparing to unpack .../125-libgradle-core-java_4.4.1-18_all.deb ... Unpacking libgradle-core-java (4.4.1-18) ... Selecting previously unselected package libbcprov-java. Preparing to unpack .../126-libbcprov-java_1.72-2_all.deb ... Unpacking libbcprov-java (1.72-2) ... Selecting previously unselected package libbcpg-java. Preparing to unpack .../127-libbcpg-java_1.72-2_all.deb ... Unpacking libbcpg-java (1.72-2) ... Selecting previously unselected package libbsh-java. Preparing to unpack .../128-libbsh-java_2.0b4-20_all.deb ... Unpacking libbsh-java (2.0b4-20) ... Selecting previously unselected package libdd-plist-java. Preparing to unpack .../129-libdd-plist-java_1.20-1.1_all.deb ... Unpacking libdd-plist-java (1.20-1.1) ... Selecting previously unselected package libjaxen-java. Preparing to unpack .../130-libjaxen-java_1.1.6-4_all.deb ... Unpacking libjaxen-java (1.1.6-4) ... Selecting previously unselected package libdom4j-java. Preparing to unpack .../131-libdom4j-java_2.1.3-2_all.deb ... Unpacking libdom4j-java (2.1.3-2) ... Selecting previously unselected package libbcel-java. Preparing to unpack .../132-libbcel-java_6.5.0-2_all.deb ... Unpacking libbcel-java (6.5.0-2) ... Selecting previously unselected package libjformatstring-java. Preparing to unpack .../133-libjformatstring-java_0.10~20131207-2.1_all.deb ... Unpacking libjformatstring-java (0.10~20131207-2.1) ... Selecting previously unselected package libfindbugs-java. Preparing to unpack .../134-libfindbugs-java_3.1.0~preview2-3_all.deb ... Unpacking libfindbugs-java (3.1.0~preview2-3) ... Selecting previously unselected package libgoogle-gson-java. Preparing to unpack .../135-libgoogle-gson-java_2.10-1_all.deb ... Unpacking libgoogle-gson-java (2.10-1) ... Selecting previously unselected package libaopalliance-java. Preparing to unpack .../136-libaopalliance-java_20070526-7_all.deb ... Unpacking libaopalliance-java (20070526-7) ... Selecting previously unselected package libguice-java. Preparing to unpack .../137-libguice-java_4.2.3-2_all.deb ... Unpacking libguice-java (4.2.3-2) ... Selecting previously unselected package libjatl-java. Preparing to unpack .../138-libjatl-java_0.2.3-1.1_all.deb ... Unpacking libjatl-java (0.2.3-1.1) ... Selecting previously unselected package libjcifs-java. Preparing to unpack .../139-libjcifs-java_1.3.19-2_all.deb ... Unpacking libjcifs-java (1.3.19-2) ... Selecting previously unselected package libeclipse-jdt-annotation-java. Preparing to unpack .../140-libeclipse-jdt-annotation-java_2.2.700+eclipse4.26-2_all.deb ... Unpacking libeclipse-jdt-annotation-java (2.2.700+eclipse4.26-2) ... Selecting previously unselected package libjavaewah-java. Preparing to unpack .../141-libjavaewah-java_1.1.7-1_all.deb ... Unpacking libjavaewah-java (1.1.7-1) ... Selecting previously unselected package libel-api-java. Preparing to unpack .../142-libel-api-java_3.0.0-3_all.deb ... Unpacking libel-api-java (3.0.0-3) ... Selecting previously unselected package libjsp-api-java. Preparing to unpack .../143-libjsp-api-java_2.3.4-3_all.deb ... Unpacking libjsp-api-java (2.3.4-3) ... Selecting previously unselected package libwebsocket-api-java. Preparing to unpack .../144-libwebsocket-api-java_1.1-2_all.deb ... Unpacking libwebsocket-api-java (1.1-2) ... Selecting previously unselected package libjetty9-java. Preparing to unpack .../145-libjetty9-java_9.4.50-3_all.deb ... Unpacking libjetty9-java (9.4.50-3) ... Selecting previously unselected package libjgit-java. Preparing to unpack .../146-libjgit-java_4.11.9-2_all.deb ... Unpacking libjgit-java (4.11.9-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../147-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libcommons-lang3-java. Preparing to unpack .../148-libcommons-lang3-java_3.12.0-2_all.deb ... Unpacking libcommons-lang3-java (3.12.0-2) ... Selecting previously unselected package libplexus-utils2-java. Preparing to unpack .../149-libplexus-utils2-java_3.4.2-1_all.deb ... Unpacking libplexus-utils2-java (3.4.2-1) ... Selecting previously unselected package libwagon-provider-api-java. Preparing to unpack .../150-libwagon-provider-api-java_3.5.3-1_all.deb ... Unpacking libwagon-provider-api-java (3.5.3-1) ... Selecting previously unselected package libmaven-resolver-java. Preparing to unpack .../151-libmaven-resolver-java_1.6.3-1_all.deb ... Unpacking libmaven-resolver-java (1.6.3-1) ... Selecting previously unselected package libgeronimo-annotation-1.3-spec-java. Preparing to unpack .../152-libgeronimo-annotation-1.3-spec-java_1.3-1_all.deb ... Unpacking libgeronimo-annotation-1.3-spec-java (1.3-1) ... Selecting previously unselected package libmaven-parent-java. Preparing to unpack .../153-libmaven-parent-java_35-1_all.deb ... Unpacking libmaven-parent-java (35-1) ... Selecting previously unselected package libmaven-shared-utils-java. Preparing to unpack .../154-libmaven-shared-utils-java_3.3.4-1_all.deb ... Unpacking libmaven-shared-utils-java (3.3.4-1) ... Selecting previously unselected package libplexus-cipher-java. Preparing to unpack .../155-libplexus-cipher-java_2.0-1_all.deb ... Unpacking libplexus-cipher-java (2.0-1) ... Selecting previously unselected package libplexus-classworlds-java. Preparing to unpack .../156-libplexus-classworlds-java_2.7.0-1_all.deb ... Unpacking libplexus-classworlds-java (2.7.0-1) ... Selecting previously unselected package libplexus-component-annotations-java. Preparing to unpack .../157-libplexus-component-annotations-java_2.1.1-1_all.deb ... Unpacking libplexus-component-annotations-java (2.1.1-1) ... Selecting previously unselected package libplexus-interpolation-java. Preparing to unpack .../158-libplexus-interpolation-java_1.26-1_all.deb ... Unpacking libplexus-interpolation-java (1.26-1) ... Selecting previously unselected package libplexus-sec-dispatcher-java. Preparing to unpack .../159-libplexus-sec-dispatcher-java_2.0-3_all.deb ... Unpacking libplexus-sec-dispatcher-java (2.0-3) ... Selecting previously unselected package libgeronimo-interceptor-3.0-spec-java. Preparing to unpack .../160-libgeronimo-interceptor-3.0-spec-java_1.0.1-4_all.deb ... Unpacking libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Selecting previously unselected package libcdi-api-java. Preparing to unpack .../161-libcdi-api-java_1.2-3_all.deb ... Unpacking libcdi-api-java (1.2-3) ... Selecting previously unselected package libsisu-inject-java. Preparing to unpack .../162-libsisu-inject-java_0.3.4-2_all.deb ... Unpacking libsisu-inject-java (0.3.4-2) ... Selecting previously unselected package libsisu-plexus-java. Preparing to unpack .../163-libsisu-plexus-java_0.3.4-3_all.deb ... Unpacking libsisu-plexus-java (0.3.4-3) ... Selecting previously unselected package libmaven3-core-java. Preparing to unpack .../164-libmaven3-core-java_3.8.7-1_all.deb ... Unpacking libmaven3-core-java (3.8.7-1) ... Selecting previously unselected package libplexus-container-default-java. Preparing to unpack .../165-libplexus-container-default-java_2.1.1-1_all.deb ... Unpacking libplexus-container-default-java (2.1.1-1) ... Selecting previously unselected package libpolyglot-maven-java. Preparing to unpack .../166-libpolyglot-maven-java_0.8~tobrien+git20120905-10_all.deb ... Unpacking libpolyglot-maven-java (0.8~tobrien+git20120905-10) ... Selecting previously unselected package librhino-java. Preparing to unpack .../167-librhino-java_1.7.14-2.1_all.deb ... Unpacking librhino-java (1.7.14-2.1) ... Selecting previously unselected package libsimple-http-java. Preparing to unpack .../168-libsimple-http-java_4.1.21-1.1_all.deb ... Unpacking libsimple-http-java (4.1.21-1.1) ... Selecting previously unselected package libwagon-file-java. Preparing to unpack .../169-libwagon-file-java_3.5.3-1_all.deb ... Unpacking libwagon-file-java (3.5.3-1) ... Selecting previously unselected package libjsoup-java. Preparing to unpack .../170-libjsoup-java_1.15.3-1_all.deb ... Unpacking libjsoup-java (1.15.3-1) ... Selecting previously unselected package libwagon-http-java. Preparing to unpack .../171-libwagon-http-java_3.5.3-1_all.deb ... Unpacking libwagon-http-java (3.5.3-1) ... Selecting previously unselected package libjcommander-java. Preparing to unpack .../172-libjcommander-java_1.71-4_all.deb ... Unpacking libjcommander-java (1.71-4) ... Selecting previously unselected package testng. Preparing to unpack .../173-testng_6.9.12-4_all.deb ... Unpacking testng (6.9.12-4) ... Selecting previously unselected package libgradle-plugins-java. Preparing to unpack .../174-libgradle-plugins-java_4.4.1-18_all.deb ... Unpacking libgradle-plugins-java (4.4.1-18) ... Selecting previously unselected package gradle. Preparing to unpack .../175-gradle_4.4.1-18_all.deb ... Unpacking gradle (4.4.1-18) ... Selecting previously unselected package maven-repo-helper. Preparing to unpack .../176-maven-repo-helper_1.11_all.deb ... Unpacking maven-repo-helper (1.11) ... Selecting previously unselected package gradle-debian-helper. Preparing to unpack .../177-gradle-debian-helper_2.4_all.deb ... Unpacking gradle-debian-helper (2.4) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../178-libsimde-dev_0.7.4~rc2-2_all.deb ... Unpacking libsimde-dev (0.7.4~rc2-2) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../179-zlib1g-dev_1%3a1.2.13.dfsg-1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up libjcifs-java (1.3.19-2) ... Setting up libbcprov-java (1.72-2) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libgraphite2-3:armhf (1.3.14-1) ... Setting up libsimde-dev (0.7.4~rc2-2) ... Setting up liblcms2-2:armhf (2.14-2) ... Setting up libjcommander-java (1.71-4) ... Setting up libslf4j-java (1.7.32-1) ... Setting up libplexus-utils2-java (3.4.2-1) ... Setting up libplexus-classworlds-java (2.7.0-1) ... Setting up libqdox-java (1.12.1-3) ... Setting up libicu72:armhf (72.1-3) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up libsimple-http-java (4.1.21-1.1) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up java-common (0.74) ... Setting up libjcip-annotations-java (20060626-6) ... Setting up libobjenesis-java (3.3-3) ... Setting up libaopalliance-java (20070526-7) ... Setting up libcommons-cli-java (1.5.0-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up liblogback-java (1:1.2.11-2) ... Setting up libminlog-java (1.3.0-1.1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.74.6-2) ... No schema files found: doing nothing. Setting up libgoogle-gson-java (2.10-1) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up libasm-java (9.4-1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdd-plist-java (1.20-1.1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libel-api-java (3.0.0-3) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... Setting up file (1:5.44-3) ... Setting up libpolyglot-maven-java (0.8~tobrien+git20120905-10) ... Setting up libfelix-gogo-runtime-java (0.16.2-1.1) ... Setting up libjzlib-java (1.1.3-2) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Setting up libcommons-collections3-java (3.2.2-2) ... Setting up libasound2-data (1.2.8-1) ... Setting up libjsch-java (0.1.55-1) ... Setting up libreflectasm-java (1.11.9+dfsg-4) ... Setting up librhino-java (1.7.14-2.1) ... Setting up autotools-dev (20220109.1) ... Setting up libbsf-java (1:2.4.0-8) ... Setting up libosgi-annotation-java (8.1.0-1) ... Setting up libjformatstring-java (0.10~20131207-2.1) ... Setting up libjavaewah-java (1.1.7-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libnspr4:armhf (2:4.35-1) ... Setting up libeclipse-jdt-annotation-java (2.2.700+eclipse4.26-2) ... Setting up libjansi-java (2.4.0-2) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:armhf (0.8-10) ... Setting up libxpp3-java (1.1.4c-3) ... Setting up libncurses6:armhf (6.4-2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:armhf (1.14.6-1) ... Setting up libwebsocket-api-java (1.1-2) ... Setting up libplexus-interpolation-java (1.26-1) ... Setting up libpng16-16:armhf (1.6.39-2) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libkryo-java (2.20-7) ... Setting up libxz-java (1.9-1) ... Setting up libjna-jni (5.13.0-2) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libfelix-framework-java (4.6.1-2.1) ... Setting up libpcsclite1:armhf (1.9.9-2) ... Setting up libhamcrest-java (2.2-1) ... Setting up libbsh-java (2.0b4-20) ... Setting up libjsp-api-java (2.3.4-3) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up libjarjar-java (1.4+svn142-12) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libjsoup-java (1.15.3-1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libxml-commons-external-java (1.4.01-5) ... Setting up libjna-java (5.13.0-2) ... Setting up libxbean-reflect-java (4.5-8) ... Setting up libasound2:armhf (1.2.8-1+b1) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libnative-platform-jni (0.14-5) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libbcpg-java (1.72-2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libantlr-java (2.7.7+dfsg-12) ... Setting up libyaml-snake-java (1.33-2) ... Setting up openssl (3.0.8-1) ... Setting up libcdi-api-java (1.2-3) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up libhawtjni-runtime-java (1.18-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up libjatl-java (0.2.3-1.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libdom4j-java (2.1.3-2) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libnative-platform-java (0.14-5) ... Setting up libosgi-core-java (8.0.0-2) ... Setting up libxstream-java (1.4.20-1) ... Setting up libnekohtml-java (1.9.22.noko2-0.1) ... Setting up gettext (0.21-12) ... Setting up libjetty9-java (9.4.50-3) ... Setting up java-wrappers (0.4) ... Setting up libosgi-compendium-java (7.0.0-1) ... Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libmaven-parent-java (35-1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:armhf (0.8-10) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libnss3:armhf (2:3.87.1-1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libbcel-java (6.5.0-2) ... Setting up libfreetype6:armhf (2.12.1+dfsg-5) ... Setting up testng (6.9.12-4) ... Setting up libcommons-lang3-java (3.12.0-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libfelix-resolver-java (1.16.0-1) ... Setting up dwz (0.15-1) ... Setting up libjansi-native-java (1.8-1) ... Setting up groff-base (1.22.4-10) ... Setting up libjansi1-java (1.18-3) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Setting up libfontconfig1:armhf (2.14.1-4) ... Setting up libwagon-file-java (3.5.3-1) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libjline2-java (2.14.6-5) ... Setting up libavahi-client3:armhf (0.8-10) ... Setting up libfindbugs-java (3.1.0~preview2-3) ... Setting up libcommons-compress-java (1.22-1) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libmaven-resolver-java (1.6.3-1) ... Setting up libcups2:armhf (2.4.2-3) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libmaven-shared-utils-java (3.3.4-1) ... Setting up libjgit-java (4.11.9-2) ... Setting up debhelper (13.11.4) ... Setting up openjdk-17-jre-headless:armhf (17.0.6+10-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20230103) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up junit4 (4.13.2-3) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up default-jre-headless (2:1.17-74) ... Setting up maven-repo-helper (1.11) ... Setting up antlr (2.7.7+dfsg-12) ... Setting up bnd (5.0.1-3) ... Setting up libguava-java (31.1-1) ... Setting up openjdk-17-jdk-headless:armhf (17.0.6+10-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up ivy (2.5.1-2) ... Setting up ant (1.10.13-1) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up groovy (2.4.21-7) ... update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode Setting up libguice-java (4.2.3-2) ... Setting up ant-optional (1.10.13-1) ... Setting up default-jdk-headless (2:1.17-74) ... Setting up libgradle-core-java (4.4.1-18) ... Setting up libmaven3-core-java (3.8.7-1) ... Setting up libgradle-plugins-java (4.4.1-18) ... Setting up gradle (4.4.1-18) ... Setting up gradle-debian-helper (2.4) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20230103) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/gatk-bwamem-1.0.4+dfsg2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-bwamem_1.0.4+dfsg2-2_source.changes dpkg-buildpackage: info: source package gatk-bwamem dpkg-buildpackage: info: source version 1.0.4+dfsg2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/gatk-bwamem-1.0.4+dfsg2' dh_auto_clean sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/gatk-bwamem-1.0.4\+dfsg2/.gradle /build/gatk-bwamem-1.0.4\+dfsg2/buildSrc/.gradle .m2 if [ -e src/main/c/org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c.save ]; then \ mv src/main/c/org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c.save src/main/c/org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c; \ fi rm src/test/resources/ref.fa.img rm: cannot remove 'src/test/resources/ref.fa.img': No such file or directory make[1]: [debian/rules:19: override_dh_auto_clean] Error 1 (ignored) # Cleaning the C part cd src/main/c/ && make clean make[2]: Entering directory '/build/gatk-bwamem-1.0.4+dfsg2/src/main/c' rm -rf bwaComponent *.o *.so make[2]: Leaving directory '/build/gatk-bwamem-1.0.4+dfsg2/src/main/c' rm -rf src/main/c/bwaComponent # Replacing the modified build.gradle file having a version number by the original one. if [ -e build.gradle.old ]; then mv build.gradle.old build.gradle; fi make[1]: Leaving directory '/build/gatk-bwamem-1.0.4+dfsg2' dh_clean debian/rules binary dh binary --with maven_repo_helper dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/gatk-bwamem-1.0.4+dfsg2' # Putting the version in the JNI file so that is can output version information. cp src/main/c/org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c src/main/c/org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c.save sed -i "s/BWA_COMMIT/\"1.0.4+dfsg2-2\"/" src/main/c/org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c # Copying the component sources to src/main/c for the JNI build mkdir -p src/main/c/bwaComponent/ cp -a bwa-apache2/* src/main/c/bwaComponent/ # Adding a version number in the build.gradle file. cp build.gradle build.gradle.old sed -i "s/\(^group.*\)/\1\nversion = '1.0.4+dfsg2'/ ; s/\+dfsg[[:digit:]]*//" build.gradle dh_auto_configure make[1]: Leaving directory '/build/gatk-bwamem-1.0.4+dfsg2' dh_auto_build mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-bwamem -Dfile.encoding=UTF-8 --parallel --max-workers=3 jar openjdk version "17.0.6" 2023-01-17 OpenJDK Runtime Environment (build 17.0.6+10-Debian-1) OpenJDK Server VM (build 17.0.6+10-Debian-1, mixed mode, sharing) Initialized native services in: /build/gatk-bwamem-1.0.4+dfsg2/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/gatk-bwamem-1.0.4+dfsg2/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 5.383 secs. The client will now receive all logging from the daemon (pid: 17588). The daemon log file: /build/gatk-bwamem-1.0.4+dfsg2/.gradle/daemon/4.4.1/daemon-17588.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 3 worker leases. Creating new cache for fileHashes, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b766ce Creating new cache for resourceHashesCache, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b766ce Creating new cache for fileHashes, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1994e68 Starting Build Compiling initialization script '/build/gatk-bwamem-1.0.4+dfsg2/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@172f0ae Compiling initialization script '/build/gatk-bwamem-1.0.4+dfsg2/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/gatk-bwamem-1.0.4+dfsg2/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/gatk-bwamem-1.0.4+dfsg2/settings.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/gatk-bwamem-1.0.4+dfsg2/settings.gradle'. Projects loaded. Root project using build file '/build/gatk-bwamem-1.0.4+dfsg2/build.gradle'. Included projects: [root project 'gatk-bwamem-jni'] Keep-alive timer started Adding Debian repository to project 'gatk-bwamem-jni' Parallel execution is an incubating feature. Evaluating root project 'gatk-bwamem-jni' using build file '/build/gatk-bwamem-1.0.4+dfsg2/build.gradle'. Compiling build file '/build/gatk-bwamem-1.0.4+dfsg2/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/gatk-bwamem-1.0.4+dfsg2/build.gradle' using BuildScriptTransformer. Adding Maven pom generation to project 'gatk-bwamem-jni' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1a87729 Tasks to be executed: [task ':compileJava', task ':buildBwaLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] Creating new cache for resourceHashesCache, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1994e68 Creating new cache for taskHistory, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e448f Creating new cache for outputFiles, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@196b32c :compileJava (Thread[Daemon worker,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.033 secs. Up-to-date check for task ':compileJava' took 0.269 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. :compileJava (Thread[Daemon worker,5,main]) completed. Took 7.69 secs. :buildBwaLib (Thread[Task worker for ':' Thread 2,5,main]) started. :buildBwaLib Putting task artifact state for task ':buildBwaLib' into context took 0.0 secs. Up-to-date check for task ':buildBwaLib' took 0.009 secs. It is not up-to-date because: No history is available. using /usr/lib/jvm/java-17-openjdk-armhf -> /usr/lib/jvm/java-17-openjdk-armhf as JAVA_HOME Starting process 'command 'make''. Working directory: /build/gatk-bwamem-1.0.4+dfsg2/src/main/c Command: make Successfully started process 'command 'make'' make[1]: Entering directory '/build/gatk-bwamem-1.0.4+dfsg2/src/main/c' gcc -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.o org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c: In function 'Java_org_broadinstitute_hellbender_utils_bwa_BwaMemIndex_openIndex': org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c:57:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 57 | return (jlong)jnibwa_openIndex(fd); | ^ org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c: In function 'Java_org_broadinstitute_hellbender_utils_bwa_BwaMemIndex_destroyIndex': org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c:63:36: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 63 | return jnibwa_destroyIndex((bwaidx_t*)idxAddr); | ^ org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c: In function 'Java_org_broadinstitute_hellbender_utils_bwa_BwaMemIndex_getRefContigNames': org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c:81:49: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 81 | void* bufMem = jnibwa_getRefContigNames((bwaidx_t*)idxAddr, &bufSize); | ^ org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c: In function 'Java_org_broadinstitute_hellbender_utils_bwa_BwaMemIndex_createAlignments': org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.c:122:26: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 122 | bwaidx_t* pIdx = (bwaidx_t*)idxAddr; | ^ gcc -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o jnibwa.o jnibwa.c make CFLAGS="-ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux" LDFLAGS="-Wl,-z,relro -Wl,-z,now" -C bwaComponent libbwa.a make[2]: Entering directory '/build/gatk-bwamem-1.0.4+dfsg2/src/main/c/bwaComponent' gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS utils.c -o utils.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS kthread.c -o kthread.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS kstring.c -o kstring.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS ksw.c -o ksw.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwt.c -o bwt.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bntseq.c -o bntseq.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwa.c -o bwa.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwamem.c -o bwamem.o bwamem.c: In function 'mem_align1_core': bwamem.c:1072:33: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1072 | err_printf("* %ld chains remain after removing duplicated chains\n", regs.n); | ~~^ ~~~~~~ | | | | long int size_t {aka unsigned int} | %d gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwamem_pair.c -o bwamem_pair.o bwamem_pair.c: In function 'mem_pestat': bwamem_pair.c:65:106: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 65 | if (bwa_verbose >= 3) fprintf(stderr, "[M::%s] # candidate unique pairs for (FF, FR, RF, RR): (%ld, %ld, %ld, %ld)\n", __func__, isize[0].n, isize[1].n, isize[2].n, isize[3].n); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d bwamem_pair.c:65:111: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 65 | if (bwa_verbose >= 3) fprintf(stderr, "[M::%s] # candidate unique pairs for (FF, FR, RF, RR): (%ld, %ld, %ld, %ld)\n", __func__, isize[0].n, isize[1].n, isize[2].n, isize[3].n); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d bwamem_pair.c:65:116: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 65 | if (bwa_verbose >= 3) fprintf(stderr, "[M::%s] # candidate unique pairs for (FF, FR, RF, RR): (%ld, %ld, %ld, %ld)\n", __func__, isize[0].n, isize[1].n, isize[2].n, isize[3].n); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d bwamem_pair.c:65:121: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 65 | if (bwa_verbose >= 3) fprintf(stderr, "[M::%s] # candidate unique pairs for (FF, FR, RF, RR): (%ld, %ld, %ld, %ld)\n", __func__, isize[0].n, isize[1].n, isize[2].n, isize[3].n); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwamem_extra.c -o bwamem_extra.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS malloc_wrap.c -o malloc_wrap.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtindex.c -o bwtindex.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS is.c -o is.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS rope.c -o rope.o gcc -c -ggdb -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-armhf/include -I/usr/lib/jvm/java-17-openjdk-armhf/include/linux -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS rle.c -o rle.o ar -csru libbwa.a utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o bwtindex.o is.o rope.o rle.o ar: `u' modifier ignored since `D' is the default (see `U') make[2]: Leaving directory '/build/gatk-bwamem-1.0.4+dfsg2/src/main/c/bwaComponent' gcc -Wl,-z,relro -Wl,-z,now -ggdb -dynamiclib -shared -o libbwa.so org_broadinstitute_hellbender_utils_bwa_BwaMemIndex.o jnibwa.o bwaComponent/libbwa.a -lm -lz -lpthread make[1]: Leaving directory '/build/gatk-bwamem-1.0.4+dfsg2/src/main/c' :buildBwaLib (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 35.272 secs. :processResources (Thread[Task worker for ':' Thread 2,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/gatk-bwamem-1.0.4+dfsg2/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE :processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.014 secs. :classes (Thread[Task worker for ':' Thread 2,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.007 secs. :debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.003 secs. It is not up-to-date because: No history is available. Generating pom file /build/gatk-bwamem-1.0.4+dfsg2/build/debian/gatk-bwamem-jni.pom :debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.728 secs. :jar (Thread[Task worker for ':' Thread 2,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.032 secs. It is not up-to-date because: No history is available. :jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.291 secs. BUILD SUCCESSFUL in 1m 16s 4 actionable tasks: 4 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/gatk-bwamem-1.0.4+dfsg2' # The shared lib should be looked for in its build directory. LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(readlink -f src/main/c)" dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-bwamem -Dfile.encoding=UTF-8 --parallel --max-workers=3 test openjdk version "17.0.6" 2023-01-17 OpenJDK Runtime Environment (build 17.0.6+10-Debian-1) OpenJDK Server VM (build 17.0.6+10-Debian-1, mixed mode, sharing) Initialized native services in: /build/gatk-bwamem-1.0.4+dfsg2/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/gatk-bwamem-1.0.4+dfsg2/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 5.103 secs. The client will now receive all logging from the daemon (pid: 18339). The daemon log file: /build/gatk-bwamem-1.0.4+dfsg2/.gradle/daemon/4.4.1/daemon-18339.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 3 worker leases. Creating new cache for fileHashes, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@18d329 Creating new cache for resourceHashesCache, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@18d329 Creating new cache for fileHashes, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@be321d Starting Build Creating new cache for metadata-1.1/results, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1065cda Settings evaluated using settings file '/build/gatk-bwamem-1.0.4+dfsg2/settings.gradle'. Projects loaded. Root project using build file '/build/gatk-bwamem-1.0.4+dfsg2/build.gradle'. Included projects: [root project 'gatk-bwamem-jni'] Keep-alive timer started Adding Debian repository to project 'gatk-bwamem-jni' Parallel execution is an incubating feature. Evaluating root project 'gatk-bwamem-jni' using build file '/build/gatk-bwamem-1.0.4+dfsg2/build.gradle'. Adding Maven pom generation to project 'gatk-bwamem-jni' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : Creating new cache for annotation-processors, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1715933 Tasks to be executed: [task ':compileJava', task ':buildBwaLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] Creating new cache for resourceHashesCache, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@be321d Creating new cache for taskHistory, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@80b52c Creating new cache for outputFiles, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@10e6d5c :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.039 secs. Skipping task ':compileJava' as it is up-to-date (took 0.33 secs). :compileJava UP-TO-DATE :compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.613 secs. :buildBwaLib (Thread[Task worker for ':',5,main]) started. :buildBwaLib Putting task artifact state for task ':buildBwaLib' into context took 0.0 secs. Skipping task ':buildBwaLib' as it is up-to-date (took 0.011 secs). :buildBwaLib UP-TO-DATE :buildBwaLib (Thread[Task worker for ':',5,main]) completed. Took 0.05 secs. :processResources (Thread[Task worker for ':' Thread 2,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/gatk-bwamem-1.0.4+dfsg2/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE :processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.016 secs. :classes (Thread[Task worker for ':' Thread 2,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE :classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.008 secs. :compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Creating new cache for metadata-2.36/module-metadata, path /build/gatk-bwamem-1.0.4+dfsg2/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@18ed979 Loading the Maven rules... Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian Up-to-date check for task ':compileTestJava' took 4.335 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. :compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 11.114 secs. :processTestResources (Thread[Task worker for ':' Thread 2,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. Up-to-date check for task ':processTestResources' took 0.103 secs. It is not up-to-date because: No history is available. :processTestResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.312 secs. :testClasses (Thread[Task worker for ':' Thread 2,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.002 secs. :test (Thread[Task worker for ':' Thread 2,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Up-to-date check for task ':test' took 0.84 secs. It is not up-to-date because: No history is available. Starting process 'Gradle Test Executor 1'. Working directory: /build/gatk-bwamem-1.0.4+dfsg2 Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath8576487683563973643txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. [M::bwa_idx_load_from_disk] read 0 ALT contigs [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] skip orientation FR as there are not enough pairs [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs Gradle Test Executor 1 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release Results: SUCCESS (7 tests, 7 successes, 0 failures, 0 skipped) Finished generating test XML results (0.063 secs) into: /build/gatk-bwamem-1.0.4+dfsg2/build/test-results/test Generating HTML test report... Finished generating test html results (0.128 secs) into: /build/gatk-bwamem-1.0.4+dfsg2/build/reports/tests/test :test (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 7.086 secs. BUILD SUCCESSFUL in 47s 5 actionable tasks: 3 executed, 2 up-to-date make[1]: Leaving directory '/build/gatk-bwamem-1.0.4+dfsg2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install mh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libgatk-bwamem-java: substitution variable ${java:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libgatk-bwamem-jni' in '../libgatk-bwamem-jni_1.0.4+dfsg2-2_armhf.deb'. dpkg-deb: building package 'libgatk-bwamem-java' in '../libgatk-bwamem-java_1.0.4+dfsg2-2_all.deb'. dpkg-deb: building package 'libgatk-bwamem-jni-dbgsym' in '../libgatk-bwamem-jni-dbgsym_1.0.4+dfsg2-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../gatk-bwamem_1.0.4+dfsg2-2_armhf.buildinfo dpkg-genchanges --build=binary -O../gatk-bwamem_1.0.4+dfsg2-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10289 and its subdirectories I: Current time: Thu May 4 03:38:01 -12 2023 I: pbuilder-time-stamp: 1683214681 Thu May 4 15:38:09 UTC 2023 I: 1st build successful. Starting 2nd build on remote node virt32a-armhf-rb.debian.net. Thu May 4 15:38:09 UTC 2023 I: Preparing to do remote build '2' on virt32a-armhf-rb.debian.net. Thu May 4 15:51:09 UTC 2023 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. Thu May 4 15:51:11 UTC 2023 I: gatk-bwamem_1.0.4+dfsg2-2_armhf.changes: Format: 1.8 Date: Sat, 23 Jul 2022 07:12:52 +0200 Source: gatk-bwamem Binary: libgatk-bwamem-java libgatk-bwamem-jni libgatk-bwamem-jni-dbgsym Architecture: all armhf Version: 1.0.4+dfsg2-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: libgatk-bwamem-java - interface to call Heng Li's bwa mem aligner from Java code libgatk-bwamem-jni - interface to call Heng Li's bwa mem aligner from Java code (jni) Changes: gatk-bwamem (1.0.4+dfsg2-2) unstable; urgency=medium . * Source-only upload to unstable Checksums-Sha1: bc712dc8c8396c497269d01b0f9b80930c8cd09b 10507 gatk-bwamem_1.0.4+dfsg2-2_armhf.buildinfo 72996dea63466d703c5100a9041296dafbf5be24 23624 libgatk-bwamem-java_1.0.4+dfsg2-2_all.deb 53164916f39e0e9c26442baaa5de260d568394fa 220764 libgatk-bwamem-jni-dbgsym_1.0.4+dfsg2-2_armhf.deb 787af274c0b986bf323b62090cf9022a00d9ed49 86200 libgatk-bwamem-jni_1.0.4+dfsg2-2_armhf.deb Checksums-Sha256: 010c77d485b04bd4e25dbb2101bf5001d5be98c1916571717fb01bdb565fc69e 10507 gatk-bwamem_1.0.4+dfsg2-2_armhf.buildinfo a2d6481df4936f5b2865ae3f80bc028ca9ae897d00f311fbe45d765f616e5d76 23624 libgatk-bwamem-java_1.0.4+dfsg2-2_all.deb 97ad3c95176c270fe46c77603b49ec64827c5b4aea5befb5a14616f2cd0af2f1 220764 libgatk-bwamem-jni-dbgsym_1.0.4+dfsg2-2_armhf.deb 333626155c396da472836baee9f156657690793def11cc37a8f3b5bc85882a91 86200 libgatk-bwamem-jni_1.0.4+dfsg2-2_armhf.deb Files: cbfbe7d37c30a4d748ff91830db87922 10507 java optional gatk-bwamem_1.0.4+dfsg2-2_armhf.buildinfo 7754a2da00ec8ad9a11c6ea204dde501 23624 java optional libgatk-bwamem-java_1.0.4+dfsg2-2_all.deb 0a4216776b079168c76f470d06d48f2f 220764 debug optional libgatk-bwamem-jni-dbgsym_1.0.4+dfsg2-2_armhf.deb 25e51f2ce17bc0ea86a75a8d1576a523 86200 java optional libgatk-bwamem-jni_1.0.4+dfsg2-2_armhf.deb Thu May 4 15:51:12 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.s5N4baHo/gatk-bwamem_1.0.4+dfsg2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.s5N4baHo/gatk-bwamem_1.0.4+dfsg2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.s5N4baHo/gatk-bwamem_1.0.4+dfsg2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.s5N4baHo/b1/gatk-bwamem_1.0.4+dfsg2-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.s5N4baHo/b2/gatk-bwamem_1.0.4+dfsg2-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.312s) 0.312s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu May 4 15:51:13 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Thu May 4 15:51:13 UTC 2023 I: gatk-bwamem from bookworm built successfully and reproducibly on armhf. Thu May 4 15:51:14 UTC 2023 I: Submitting .buildinfo files to external archives: Thu May 4 15:51:14 UTC 2023 I: Submitting 12K b1/gatk-bwamem_1.0.4+dfsg2-2_armhf.buildinfo.asc Thu May 4 15:51:15 UTC 2023 I: Submitting 12K b2/gatk-bwamem_1.0.4+dfsg2-2_armhf.buildinfo.asc Thu May 4 15:51:16 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 4 15:51:16 UTC 2023 I: Done submitting .buildinfo files. Thu May 4 15:51:16 UTC 2023 I: Removing signed gatk-bwamem_1.0.4+dfsg2-2_armhf.buildinfo.asc files: removed './b1/gatk-bwamem_1.0.4+dfsg2-2_armhf.buildinfo.asc' removed './b2/gatk-bwamem_1.0.4+dfsg2-2_armhf.buildinfo.asc'