Mon May 22 23:27:07 UTC 2023 I: starting to build clonalframe/bookworm/armhf on jenkins on '2023-05-22 23:27' Mon May 22 23:27:07 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_41/7717/console.log Mon May 22 23:27:07 UTC 2023 I: Downloading source for bookworm/clonalframe=1.2-11 --2023-05-22 23:27:07-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/clonalframe/clonalframe_1.2-11.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2023 (2.0K) [text/prs.lines.tag] Saving to: ‘clonalframe_1.2-11.dsc’ 0K . 100% 162M=0s 2023-05-22 23:27:07 (162 MB/s) - ‘clonalframe_1.2-11.dsc’ saved [2023/2023] Mon May 22 23:27:07 UTC 2023 I: clonalframe_1.2-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: clonalframe Binary: clonalframe Architecture: any Version: 1.2-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/clonalframe Vcs-Git: https://salsa.debian.org/med-team/clonalframe.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), qt5-qmake, libgsl-dev Package-List: clonalframe deb science optional arch=any Checksums-Sha1: 3e107ba13c13cc6bce1531b66a4e337dc4e30675 45475 clonalframe_1.2.orig.tar.gz 017bfde5f3b92d9c33bbb5a7cfb8636a36189ea1 5956 clonalframe_1.2-11.debian.tar.xz Checksums-Sha256: eded106eb6193acd47eef20ae43d6cdcf64ca26aee89f7d81f49d894847f1b67 45475 clonalframe_1.2.orig.tar.gz 0f7fa4fb3ba5101ef812f1e10ab56881dfbe4bfaf577fd19199b3475a1e215e6 5956 clonalframe_1.2-11.debian.tar.xz Files: ee75640b1ea5dcf9aca0d732f55817c9 45475 clonalframe_1.2.orig.tar.gz bc01fde45a9756e924e16feb1949080c 5956 clonalframe_1.2-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFSHT0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH2Pg/+M3o1g/fqA5lZws6uoT8z6NDOy4fTFV5m NTVQRmnUvN6dhG4A/hNMdYf/Ao+rZcK9sFzdoNxS7a+Xocwdi6/LD9MNamToD9wP thswDCxQWpNkHzjuuDLH2qtksVi3J8gmy7/W7I9xOTLvBv0/q5P3PjFx8K/QI3bY fVyBr02LWfA8LlofSgKwyWhVfm9/JrDyK9Z5YH78KDHRcRGvWhTMfA1Tp1XbWMyg O2CfVOcF3wMWUsvGlMZ4o+2vMg79Q34XqrwM/z1VN5cuunRpFlHA18Jb7avytvQ9 xHuSGtNzqQsxw0JH2SSjQg2jxQDi+MLV9KJqxqMCfAosy1nXfFMt2tsCUJ2CHRnW tkVrtXeJz61WTrz55NtLA2IFqIbq6siaTf1EIMc15mVyFMnH8qQLkdmWM5Rw1JLr +1tOHWRLqGyC+W8sozTolAP+ZIz//LzjsrQxyNDDaDHuVvVjl2NdJnnjor3uY+xF LEDWmzxmdWPENqscSTTlndoekXPptIfWwKs9zxLas021QfyXbympFuo0GcBBcQSq N1Yvz+3kodGwh4T/USptGQh0pS2nBse5DmR9yp5ERGFlX+D1UtayJtnnhlNsbNtk /7w+PqActKnTBOAux437tVXdj54VkzgBJ7lksbUUO5GAMR2jYllxGo9EPxXAS6Au QnP568o6Rqw= =q5QT -----END PGP SIGNATURE----- Mon May 22 23:27:07 UTC 2023 I: Checking whether the package is not for us Mon May 22 23:27:07 UTC 2023 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Mon May 22 23:27:07 UTC 2023 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Mon May 22 23:31:57 UTC 2023 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 22 11:27:14 -12 2023 I: pbuilder-time-stamp: 1684798034 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [clonalframe_1.2-11.dsc] I: copying [./clonalframe_1.2.orig.tar.gz] I: copying [./clonalframe_1.2-11.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Sep 27 07:36:29 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./clonalframe_1.2-11.dsc: no acceptable signature found dpkg-source: info: extracting clonalframe in clonalframe-1.2 dpkg-source: info: unpacking clonalframe_1.2.orig.tar.gz dpkg-source: info: unpacking clonalframe_1.2-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_gcc-4.6.patch dpkg-source: info: applying no_qtlibs.patch dpkg-source: info: applying glibc2.27.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15793/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='496933385011474ea77a7ed194be1ca9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15793' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zzG5wC34/pbuilderrc_64qT --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zzG5wC34/b1 --logfile b1/build.log clonalframe_1.2-11.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/15793/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), qt5-qmake, libgsl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on qt5-qmake; however: Package qt5-qmake is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} qt5-qmake{a} qt5-qmake-bin{a} qtchooser{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 21.0 MB of archives. After unpacking 78.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libgslcblas0 armhf 2.7.1+dfsg-3+b1 [87.7 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf libgsl27 armhf 2.7.1+dfsg-3+b1 [773 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libgsl-dev armhf 2.7.1+dfsg-3+b1 [975 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf qt5-qmake-bin armhf 5.15.8+dfsg-8 [876 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf qtchooser armhf 66-2 [23.6 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf qt5-qmake armhf 5.15.8+dfsg-8 [221 kB] Fetched 21.0 MB in 11s (2000 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/clonalframe-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../clonalframe_1.2-11_source.changes dpkg-buildpackage: info: source package clonalframe dpkg-buildpackage: info: source version 1.2-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/build/clonalframe-1.2' dh_clean rm -rf bin build Makefile make[1]: Leaving directory '/build/clonalframe-1.2' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/clonalframe-1.2' QT_SELECT=5 CXXFLAGS="-g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive" dh_auto_configure qmake -makefile "QMAKE_CFLAGS_RELEASE=-g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /build/clonalframe-1.2/.qmake.stash make[1]: Leaving directory '/build/clonalframe-1.2' dh_auto_build make -j3 make[1]: Entering directory '/build/clonalframe-1.2' g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/alignment_xmfa.o src/alignment_xmfa.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/alignment_structure.o src/alignment_structure.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/alignment.o src/alignment.cpp src/alignment.cpp: In member function 'void wb::Alignment::writeToFile(char*)': src/alignment.cpp:236:21: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 236 | char * lets="ATCG"; | ^~~~~~ src/alignment.cpp:241:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 241 | for (unsigned int i=0;i='0' & ch<='9') | ~~^~~~~ src/alignment_xmfa.cpp: In constructor 'wb::Alignment_xmfa::Alignment_xmfa(char*, bool, int)': src/alignment_xmfa.cpp:129:31: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 129 | for (j=0;j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 188 | for (k=1;ksize();k++) | ~^~~~~~~~~~~~ src/burst.cpp:190:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 190 | if (k>=rid->size()) continue; | ~^~~~~~~~~~~~~ src/burst.cpp: In member function 'void wb::Burst::optimiseFathers(gsl_vector_int*, std::vector >*, int)': src/burst.cpp:259:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 259 | if (slvs->at(prop).size()>current && !descended(prop,i,fathers)) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ src/burst.cpp:252:89: warning: unused parameter 'f' [-Wunused-parameter] 252 | void Burst::optimiseFathers(gsl_vector_int * fathers,vector > *slvs,int f) { | ~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/genes.o src/genes.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/hashcell.o src/hashcell.cpp src/genes.cpp: In constructor 'wb::Genes::Genes(wb::Alignment*, char*, char*)': src/genes.cpp:34:19: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 34 | fscanf(mapf,"%d",&buf); | ~~~~~~^~~~~~~~~~~~~~~~ src/genes.cpp:53:19: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fscanf(genes,"%d %d",&f1,&f2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/move_ages.o src/move_ages.cpp src/hashcell.cpp: In member function 'void wb::HashCell::addNode(wb::Tree*)': src/hashcell.cpp:51:18: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 51 | if (l>=t->recMap->size) break; | ~^~~~~~~~~~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/move_delta.o src/move_delta.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/move_gap.o src/move_gap.cpp src/move_ages.cpp: In member function 'virtual void wb::Move_ages::move(wb::Param*)': src/move_ages.cpp:60:21: warning: suggest braces around empty body in an 'else' statement [-Wempty-body] 60 | } else ;//printf("Age change rejected because out of range\n"); | ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/move_hidden.o src/move_hidden.cpp src/move_delta.cpp: In constructor 'wb::Move_delta::Move_delta(gsl_rng*, wb::Param*)': src/move_delta.cpp:24:50: warning: unused parameter 'p' [-Wunused-parameter] 24 | Move_delta::Move_delta(gsl_rng * rng,Param * p):Move(rng) { | ~~~~~~~~^ src/move_gap.cpp: In constructor 'wb::Move_gap::Move_gap(gsl_rng*, wb::Param*)': src/move_gap.cpp:24:46: warning: unused parameter 'p' [-Wunused-parameter] 24 | Move_gap::Move_gap(gsl_rng * rng,Param * p) : Move(rng) {} | ~~~~~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/move_hidden2.o src/move_hidden2.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/move_mu.o src/move_mu.cpp src/move_hidden.cpp: In constructor 'wb::Move_hidden::Move_hidden(gsl_rng*, wb::Param*)': src/move_hidden.cpp:25:52: warning: unused parameter 'p' [-Wunused-parameter] 25 | Move_hidden::Move_hidden(gsl_rng * rng,Param * p) : Move(rng) | ~~~~~~~~^ src/move_hidden.cpp: In member function 'void wb::Move_hidden::forwardfast(wb::Param*, wb::Tree*)': src/move_hidden.cpp:127:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 127 | for (unsigned int i=0;ia->polySites,old)- gsl_vector_int_get(p->a->polySites,old-1); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/gsl/gsl_errno.h:23, from /usr/include/gsl/gsl_matrix_complex_long_double.h:25, from /usr/include/gsl/gsl_matrix.h:4, from src/alignment.h:24, from src/move.h:23, from src/move_hidden.h:23, from src/move_hidden.cpp:20: In function 'int printf(const char*, ...)', inlined from 'int wb::Move_hidden::setState(wb::Tree*, wb::Param*, int, gsl_vector*)' at src/move_hidden.cpp:263:19: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:86:23: warning: 'r' may be used uninitialized [-Wmaybe-uninitialized] 86 | return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/move_hidden.cpp: In member function 'int wb::Move_hidden::setState(wb::Tree*, wb::Param*, int, gsl_vector*)': src/move_hidden.cpp:244:16: note: 'r' was declared here 244 | double r; | ^ src/move_mu.cpp: In constructor 'wb::Move_mu::Move_mu(gsl_rng*, wb::Param*)': src/move_mu.cpp:24:44: warning: unused parameter 'p' [-Wunused-parameter] 24 | Move_mu::Move_mu(gsl_rng * rng,Param * p):Move(rng) {} | ~~~~~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/move_nu.o src/move_nu.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/move_rho.o src/move_rho.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/move_wb.o src/move_wb.cpp src/move_nu.cpp: In constructor 'wb::Move_nu::Move_nu(gsl_rng*, wb::Param*)': src/move_nu.cpp:24:44: warning: unused parameter 'p' [-Wunused-parameter] 24 | Move_nu::Move_nu(gsl_rng * rng,Param * p):Move(rng) {} | ~~~~~~~~^ src/move_nu.cpp: In member function 'virtual void wb::Move_nu::move(wb::Param*)': src/move_nu.cpp:56:16: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 56 | if (gsl_vector_char_get(t->recMap,j)==1) | ^ src/move_rho.cpp: In constructor 'wb::Move_rho::Move_rho(gsl_rng*, wb::Param*)': src/move_rho.cpp:24:46: warning: unused parameter 'p' [-Wunused-parameter] 24 | Move_rho::Move_rho(gsl_rng * rng,Param * p):Move(rng) | ~~~~~~~~^ src/move_wb.cpp: In member function 'virtual void wb::Move_wb::move(wb::Param*)': src/move_wb.cpp:127:17: warning: unused variable 'sizeys2' [-Wunused-variable] 127 | int sizeys2=propLocs(ys,probys,x,p); | ^~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/move.o src/move.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/param.o src/param.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/recorder.o src/recorder.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/tree_coal.o src/tree_coal.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/tree_simple.o src/tree_simple.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/tree_upgma.o src/tree_upgma.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/tree_newick.o src/tree_newick.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/tree.o src/tree.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/util.o src/util.cpp src/tree.cpp: In static member function 'static wb::Tree* wb::Tree::move(wb::Tree*, wb::Tree*, double, gsl_vector_char*, gsl_vector_char*, wb::Param*)': src/tree.cpp:99:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 99 | if (z!=NULL) | ^ src/util.cpp: In static member function 'static void wb::Util::normalize(double*, int)': src/util.cpp:83:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 83 | for (unsigned int i=0;irec++;} | ~~~^~~~~~~~~ src/tree.cpp:197:20: note: 'vals[9]' was declared here 197 | double vals[10]; | ^~~~ src/tree.cpp:223:29: warning: 'vals[5]' may be used uninitialized [-Wmaybe-uninitialized] 223 | {ret+=vals[5];p->rec++;} | ~~~^~~~~~~~~ src/tree.cpp:197:20: note: 'vals[5]' was declared here 197 | double vals[10]; | ^~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o build/ClonalFrame.o src/ClonalFrame.cpp src/ClonalFrame.cpp: In function 'gsl_rng* makerng()': src/ClonalFrame.cpp:83:14: warning: variable 'rng_seed' set but not used [-Wunused-but-set-variable] 83 | long int rng_seed; | ^~~~~~~~ src/ClonalFrame.cpp: In function 'int main(int, char**)': src/ClonalFrame.cpp:263:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 263 | if (cleanup==true) {a->cleanUp();a->writeToFile("/tmp/out.xmfa");} | ^~~~~~~~~~~~~~~ src/ClonalFrame.cpp:341:42: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] 341 | printf("Time spent in MH in seconds:%d\n",t2-t); | ~^ ~~~~ | | | | int long unsigned int | %ld src/ClonalFrame.cpp: In function 'gsl_rng* makerng()': src/ClonalFrame.cpp:96:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 96 | fread(&seed,sizeof(seed),1,devrandom); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o bin/ClonalFrame build/alignment_xmfa.o build/alignment_structure.o build/alignment.o build/boot.o build/burst.o build/consensus.o build/genes.o build/hashcell.o build/move_ages.o build/move_delta.o build/move_gap.o build/move_hidden.o build/move_hidden2.o build/move_mu.o build/move_nu.o build/move_rho.o build/move_wb.o build/move.o build/param.o build/recorder.o build/tree_coal.o build/tree_simple.o build/tree_upgma.o build/tree_newick.o build/tree.o build/util.o build/ClonalFrame.o -lgsl -lgslcblas make[1]: Leaving directory '/build/clonalframe-1.2' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/clonalframe/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/clonalframe/usr/bin/ClonalFrame contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'clonalframe' in '../clonalframe_1.2-11_armhf.deb'. dpkg-deb: building package 'clonalframe-dbgsym' in '../clonalframe-dbgsym_1.2-11_armhf.deb'. dpkg-genbuildinfo --build=binary -O../clonalframe_1.2-11_armhf.buildinfo dpkg-genchanges --build=binary -O../clonalframe_1.2-11_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15793 and its subdirectories I: Current time: Mon May 22 11:31:50 -12 2023 I: pbuilder-time-stamp: 1684798310 Mon May 22 23:32:00 UTC 2023 I: 1st build successful. Starting 2nd build on remote node cbxi4pro0-armhf-rb.debian.net. Mon May 22 23:32:00 UTC 2023 I: Preparing to do remote build '2' on cbxi4pro0-armhf-rb.debian.net. Mon May 22 23:44:27 UTC 2023 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net. Mon May 22 23:44:29 UTC 2023 I: clonalframe_1.2-11_armhf.changes: Format: 1.8 Date: Mon, 27 Sep 2021 21:23:54 +0200 Source: clonalframe Binary: clonalframe clonalframe-dbgsym Architecture: armhf Version: 1.2-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clonalframe - inference of bacterial microevolution using multilocus sequence d Changes: clonalframe (1.2-11) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) Checksums-Sha1: 0caa718446068cee7daa9062a94382a6f3b1d525 277280 clonalframe-dbgsym_1.2-11_armhf.deb 4feeca85bcd1d602dbd2e2e87caafb0eab375c11 5173 clonalframe_1.2-11_armhf.buildinfo 67d9fb24204b09509acc91fbce438a255acb2010 41572 clonalframe_1.2-11_armhf.deb Checksums-Sha256: d7ff718484cc3142e851a4ae88649d125aace2e25259aaae9e5ec16d53cb3825 277280 clonalframe-dbgsym_1.2-11_armhf.deb ed7b61a3a45528442d2d3973391d3c235b889e332481aa0dc2b1899aa1b1e804 5173 clonalframe_1.2-11_armhf.buildinfo 3493271607cb65c599e7cddb992e3ea563a10337bf43d6cf7fb1e5beae8d6481 41572 clonalframe_1.2-11_armhf.deb Files: d813367aadc3281cf2c8da7e8c0b0ce2 277280 debug optional clonalframe-dbgsym_1.2-11_armhf.deb ee098537688d604e336c4551ea20817b 5173 science optional clonalframe_1.2-11_armhf.buildinfo 9754fa69a15793dd4832d437e536d1a0 41572 science optional clonalframe_1.2-11_armhf.deb Mon May 22 23:44:34 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zzG5wC34/clonalframe_1.2-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zzG5wC34/clonalframe_1.2-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zzG5wC34/clonalframe_1.2-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zzG5wC34/b1/clonalframe_1.2-11_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.zzG5wC34/b2/clonalframe_1.2-11_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 3.325s) 3.325s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.083s) 0.082s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon May 22 23:44:38 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Mon May 22 23:44:38 UTC 2023 I: clonalframe from bookworm built successfully and reproducibly on armhf. Mon May 22 23:44:41 UTC 2023 I: Submitting .buildinfo files to external archives: Mon May 22 23:44:41 UTC 2023 I: Submitting 8.0K b1/clonalframe_1.2-11_armhf.buildinfo.asc Mon May 22 23:44:42 UTC 2023 I: Submitting 8.0K b2/clonalframe_1.2-11_armhf.buildinfo.asc Mon May 22 23:44:43 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 22 23:44:43 UTC 2023 I: Done submitting .buildinfo files. Mon May 22 23:44:43 UTC 2023 I: Removing signed clonalframe_1.2-11_armhf.buildinfo.asc files: removed './b1/clonalframe_1.2-11_armhf.buildinfo.asc' removed './b2/clonalframe_1.2-11_armhf.buildinfo.asc'