Tue Jul 9 14:47:38 UTC 2024 I: starting to build bioawk/bookworm/armhf on jenkins on '2024-07-09 14:47' Tue Jul 9 14:47:38 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_6/8641/console.log Tue Jul 9 14:47:38 UTC 2024 I: Downloading source for bookworm/bioawk=1.0-4+deb12u1 --2024-07-09 14:47:39-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/bioawk/bioawk_1.0-4%2bdeb12u1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1683 (1.6K) [text/prs.lines.tag] Saving to: ‘bioawk_1.0-4+deb12u1.dsc’ 0K . 100% 150M=0s 2024-07-09 14:47:39 (150 MB/s) - ‘bioawk_1.0-4+deb12u1.dsc’ saved [1683/1683] Tue Jul 9 14:47:39 UTC 2024 I: bioawk_1.0-4+deb12u1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bioawk Binary: bioawk Architecture: any Version: 1.0-4+deb12u1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra Homepage: https://github.com/lh3/bioawk Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/bioawk Vcs-Git: https://salsa.debian.org/med-team/bioawk.git Testsuite: autopkgtest Testsuite-Triggers: samtools-test, seqkit-examples Build-Depends: debhelper-compat (= 13), bison, libz-dev Package-List: bioawk deb science optional arch=any Checksums-Sha1: 6c0de67e4a9a8718e87e8d78395d3299f866f1d1 72096 bioawk_1.0.orig.tar.gz 48721303a748336fe05762e437e059704fe176ea 5384 bioawk_1.0-4+deb12u1.debian.tar.xz Checksums-Sha256: 5cbef3f39b085daba45510ff450afcf943cfdfdd483a546c8a509d3075ff51b5 72096 bioawk_1.0.orig.tar.gz 208910021f62eeda4f7220bc2b5e32c6ba8e0f75805237d5c0ef7c32759db18f 5384 bioawk_1.0-4+deb12u1.debian.tar.xz Files: a2d0dbb2943b3e0bea96a5360390b656 72096 bioawk_1.0.orig.tar.gz e88f1a0cb85401a563b507ad722ff68f 5384 bioawk_1.0-4+deb12u1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEE1Uw7+v+wQt44LaXXQc5/C58bizIFAmYULW8ACgkQQc5/C58b izL5qwf+KFcpmSj00Sh23tMHScpE6jZrnxKM72UEIZ7wGmwAa+KnrchZOG7nOzB2 rvIZNA2zyj6hs2oO5TFlSMzMOzHVJ2CWeh4YRX2KXVqPPYWi5EIwUGvCu2y6BoTj +lKA+JatUrG3JnWNJ5Ubrvh2kdx1FVw41akXTEYTVdqO85OvlT1sp3U5J9pWy2aO BKj7QeLDYZYa3qZZRRDNDH0rDXy9GO5RqK+jgN2dGMjDajrxrz19HtXZGPLX3dU+ JF4UkgGEf6nEuj9DpwUt4BDopq4N8C2+d0Nj/gg0ydVzb1Krjvd1x9QhHLTa68K6 JAed865EGlTX4S2EkCJLKPROW4t5rA== =/U9a -----END PGP SIGNATURE----- Tue Jul 9 14:47:39 UTC 2024 I: Checking whether the package is not for us Tue Jul 9 14:47:39 UTC 2024 I: Starting 1st build on remote node virt64b-armhf-rb.debian.net. Tue Jul 9 14:47:39 UTC 2024 I: Preparing to do remote build '1' on virt64b-armhf-rb.debian.net. Tue Jul 9 14:48:52 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 9 02:47:46 -12 2024 I: pbuilder-time-stamp: 1720536466 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bioawk_1.0-4+deb12u1.dsc] I: copying [./bioawk_1.0.orig.tar.gz] I: copying [./bioawk_1.0-4+deb12u1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Apr 8 05:46:23 2024 -12 gpgv: using RSA key D54C3BFAFFB042DE382DA5D741CE7F0B9F1B8B32 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bioawk_1.0-4+deb12u1.dsc: no acceptable signature found dpkg-source: info: extracting bioawk in bioawk-1.0 dpkg-source: info: unpacking bioawk_1.0.orig.tar.gz dpkg-source: info: unpacking bioawk_1.0-4+deb12u1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18081/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='eb760c1e47ed499fb499e37f6a0446c9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='18081' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fsVpilxd/pbuilderrc_bkMK --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fsVpilxd/b1 --logfile b1/build.log bioawk_1.0-4+deb12u1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64b 6.1.0-22-arm64 #1 SMP Debian 6.1.94-1 (2024-06-21) aarch64 GNU/Linux I: ls -l /bin total 4964 -rwxr-xr-x 1 root root 838488 Mar 29 09:26 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 2023 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 27 21:52 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 55748 Mar 27 21:52 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 2022 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 2023 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 27 21:52 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 27 21:52 more -rwsr-xr-x 1 root root 38496 Mar 27 21:52 mount -rwxr-xr-x 1 root root 9824 Mar 27 21:52 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 09:26 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 14152 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 27 21:52 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Jan 19 21:27 tar -rwxr-xr-x 1 root root 9800 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 27 21:52 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 27 21:52 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/18081/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), bison, libz-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19279 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on libz-dev; however: Package libz-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After unpacking 72.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+deb12u1 [78.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf bison armhf 2:3.8.2+dfsg-1+b1 [1142 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-7~deb12u1 [517 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 22 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.3~deb12u1 [591 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Fetched 20.1 MB in 1s (22.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19279 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+deb12u1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+deb12u1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package bison. Preparing to unpack .../15-bison_2%3a3.8.2+dfsg-1+b1_armhf.deb ... Unpacking bison (2:3.8.2+dfsg-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7~deb12u1_all.deb ... Unpacking libtool (2.4.7-7~deb12u1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../23-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../25-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.3~deb12u1_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... 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Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up bison (2:3.8.2+dfsg-1+b1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3~deb12u1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-7~deb12u1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/bioawk-1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bioawk_1.0-4+deb12u1_source.changes dpkg-buildpackage: info: source package bioawk dpkg-buildpackage: info: source version 1.0-4+deb12u1 dpkg-buildpackage: info: source distribution bookworm dpkg-buildpackage: info: source changed by Santiago Vila dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/bioawk-1.0' dh_auto_clean make -j1 clean make[2]: Entering directory '/build/reproducible-path/bioawk-1.0' rm -fr a.out *.o *.obj maketab maketab.exe *.bb *.bbg *.da *.gcov *.gcno *.gcda awk ytab.* proctab.c *.dSYM make[2]: Leaving directory '/build/reproducible-path/bioawk-1.0' rm -f y.tab.h y.tab.c rm -f bioawk maketab make[1]: Leaving directory '/build/reproducible-path/bioawk-1.0' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/bioawk.substvars debian/files rm -fr -- debian/bioawk/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel dh_auto_build -O--no-parallel make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bioawk-1.0' bison -y -d awkgram.y awkgram.y: warning: 43 shift/reduce conflicts [-Wconflicts-sr] awkgram.y: warning: 85 reduce/reduce conflicts [-Wconflicts-rr] awkgram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples cp y.tab.c ytab.c cp y.tab.h ytab.h gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ytab.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o b.o b.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parse.o parse.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 maketab.c -o maketab -Wl,-z,relro -Wl,-z,now ./maketab >proctab.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proctab.o proctab.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tran.o tran.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lib.o lib.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o run.o run.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lex.o lex.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addon.o addon.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security ytab.o b.o main.o parse.o proctab.o tran.o lib.o run.o lex.o addon.o -o bioawk -lm -lz -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/bioawk-1.0' dh_auto_test -O--no-parallel rm -fr -- /tmp/dh-xdg-rundir-mMauipzf create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel rm -f -- debian/bioawk.substvars rm -fr -- debian/.debhelper/generated/bioawk/ debian/bioawk/ debian/tmp/ dh_auto_install --destdir=debian/bioawk/ -O--no-parallel install -m0755 -d /build/reproducible-path/bioawk-1.0/debian/bioawk dh_install -O--no-parallel install -m0755 -d debian/bioawk/usr/bin cp --reflink=auto -a ./bioawk debian/bioawk/usr/bin/ dh_installdocs -O--no-parallel install -m0755 -d debian/bioawk/usr/share/doc/bioawk install -p -m0644 debian/copyright debian/bioawk/usr/share/doc/bioawk/copyright dh_installchangelogs -O--no-parallel install -m0755 -d debian/bioawk/usr/share/doc/bioawk install -p -m0644 debian/.debhelper/generated/bioawk/dh_installchangelogs.dch.trimmed debian/bioawk/usr/share/doc/bioawk/changelog.Debian dh_installman -O--no-parallel install -m0755 -d debian/bioawk/usr/share/man/man1/ install -p -m0644 ./debian/bioawk.1 debian/bioawk/usr/share/man/man1/bioawk.1 man-recode --to-code UTF-8 --suffix .dh-new debian/bioawk/usr/share/man/man1/bioawk.1 mv debian/bioawk/usr/share/man/man1/bioawk.1.dh-new debian/bioawk/usr/share/man/man1/bioawk.1 chmod 0644 -- debian/bioawk/usr/share/man/man1/bioawk.1 dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel cd debian/bioawk chmod a-x usr/share/doc/bioawk/changelog.Debian usr/share/man/man1/bioawk.1 gzip -9nf usr/share/doc/bioawk/changelog.Debian usr/share/man/man1/bioawk.1 cd '/build/reproducible-path/bioawk-1.0' dh_fixperms -O--no-parallel find debian/bioawk ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/bioawk/usr/share/doc -type f -a -true -a ! -regex 'debian/bioawk/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/bioawk/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/bioawk/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/bioawk -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/bioawk/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dwz -- debian/bioawk/usr/bin/bioawk dh_strip -a -O--no-parallel install -m0755 -d debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/bioawk/usr/bin/bioawk debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/7b/ab065794933c2805c47a795262c763e68ec692.debug chmod 0644 -- debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/7b/ab065794933c2805c47a795262c763e68ec692.debug strip --remove-section=.comment --remove-section=.note debian/bioawk/usr/bin/bioawk objcopy --add-gnu-debuglink debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/7b/ab065794933c2805c47a795262c763e68ec692.debug debian/bioawk/usr/bin/bioawk install -m0755 -d debian/.debhelper/bioawk/dbgsym-root/usr/share/doc ln -s bioawk debian/.debhelper/bioawk/dbgsym-root/usr/share/doc/bioawk-dbgsym install -m0755 -d debian/.debhelper/bioawk dh_makeshlibs -a -O--no-parallel rm -f debian/bioawk/DEBIAN/shlibs dh_shlibdeps -a -O--no-parallel install -m0755 -d debian/bioawk/DEBIAN dpkg-shlibdeps -Tdebian/bioawk.substvars debian/bioawk/usr/bin/bioawk dh_installdeb -O--no-parallel install -m0755 -d debian/bioawk/DEBIAN dh_gencontrol -O--no-parallel install -m0755 -d debian/bioawk/DEBIAN echo misc:Depends= >> debian/bioawk.substvars echo misc:Pre-Depends= >> debian/bioawk.substvars install -m0755 -d debian/.debhelper/bioawk/dbgsym-root/DEBIAN dpkg-gencontrol -pbioawk -ldebian/changelog -Tdebian/bioawk.substvars -Pdebian/.debhelper/bioawk/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=bioawk-dbgsym "-DDepends=bioawk (= \${binary:Version})" "-DDescription=debug symbols for bioawk" -DBuild-Ids=7bab065794933c2805c47a795262c763e68ec692 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/bioawk/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbioawk -ldebian/changelog -Tdebian/bioawk.substvars -Pdebian/bioawk chmod 0644 -- debian/bioawk/DEBIAN/control dh_md5sums -O--no-parallel install -m0755 -d debian/bioawk/DEBIAN cd debian/bioawk >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/bioawk/DEBIAN/md5sums install -m0755 -d debian/.debhelper/bioawk/dbgsym-root/DEBIAN cd debian/.debhelper/bioawk/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/bioawk/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--no-parallel dpkg-deb --root-owner-group --build debian/bioawk .. dpkg-deb --root-owner-group --build debian/.debhelper/bioawk/dbgsym-root .. dpkg-deb: building package 'bioawk' in '../bioawk_1.0-4+deb12u1_armhf.deb'. dpkg-deb: building package 'bioawk-dbgsym' in '../bioawk-dbgsym_1.0-4+deb12u1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../bioawk_1.0-4+deb12u1_armhf.buildinfo dpkg-genchanges --build=binary -O../bioawk_1.0-4+deb12u1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18081 and its subdirectories I: Current time: Tue Jul 9 02:48:42 -12 2024 I: pbuilder-time-stamp: 1720536522 Tue Jul 9 14:48:55 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32z-armhf-rb.debian.net. Tue Jul 9 14:48:55 UTC 2024 I: Preparing to do remote build '2' on virt32z-armhf-rb.debian.net. Tue Jul 9 14:49:54 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. Tue Jul 9 14:49:56 UTC 2024 I: bioawk_1.0-4+deb12u1_armhf.changes: Format: 1.8 Date: Mon, 08 Apr 2024 19:40:00 +0200 Source: bioawk Binary: bioawk bioawk-dbgsym Architecture: armhf Version: 1.0-4+deb12u1 Distribution: bookworm Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Santiago Vila Description: bioawk - extension of awk for biological sequence analysis Closes: 1068341 Changes: bioawk (1.0-4+deb12u1) bookworm; urgency=medium . * Team upload. * debian/rules: Add --no-parallel to avoid the effects of a Makefile bug which makes the package to FTBFS randomly. Closes: #1068341. Checksums-Sha1: e10d42e1b598ec8019f22c4ee7b7e0a6aed49ac2 121480 bioawk-dbgsym_1.0-4+deb12u1_armhf.deb 030d93526a670624b91e0b6743903a95f8a4d7f2 5183 bioawk_1.0-4+deb12u1_armhf.buildinfo 026ac878f3e626b895682cf5cfbea31bcb823279 49932 bioawk_1.0-4+deb12u1_armhf.deb Checksums-Sha256: 4804f5f79b0567db32cf8ca6b1122a2cda5a93bed5425bfd2e95f8f6fb60cb80 121480 bioawk-dbgsym_1.0-4+deb12u1_armhf.deb ae4f52b97787f8f735c7fefc44fbe23fb3ff94e67c047864abd4de4da41504c2 5183 bioawk_1.0-4+deb12u1_armhf.buildinfo 25dde7256d94c1b7bc9197cbb9450f0c0848930d63b18a83698c958fb2c61919 49932 bioawk_1.0-4+deb12u1_armhf.deb Files: 4ec16d1ae2e5e8fb6e4a7117fb5540e7 121480 debug optional bioawk-dbgsym_1.0-4+deb12u1_armhf.deb 71e04d1eddf1645824e71ef0e9db6404 5183 science optional bioawk_1.0-4+deb12u1_armhf.buildinfo 8e9e270368459553bc5798b9881eabba 49932 science optional bioawk_1.0-4+deb12u1_armhf.deb Tue Jul 9 14:49:57 UTC 2024 I: diffoscope 272 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_6-8641.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.fsVpilxd/bioawk_1.0-4+deb12u1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.fsVpilxd/bioawk_1.0-4+deb12u1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.fsVpilxd/bioawk_1.0-4+deb12u1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.fsVpilxd/b1/bioawk_1.0-4+deb12u1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.fsVpilxd/b2/bioawk_1.0-4+deb12u1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.317s) 0.317s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 599ms CPU time consumed: 600ms Tue Jul 9 14:49:58 UTC 2024 I: diffoscope 272 found no differences in the changes files, and a .buildinfo file also exists. Tue Jul 9 14:49:58 UTC 2024 I: bioawk from bookworm built successfully and reproducibly on armhf. Tue Jul 9 14:49:59 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Jul 9 14:49:59 UTC 2024 I: Submitting 8.0K b1/bioawk_1.0-4+deb12u1_armhf.buildinfo.asc Tue Jul 9 14:50:00 UTC 2024 I: Submitting 8.0K b2/bioawk_1.0-4+deb12u1_armhf.buildinfo.asc Tue Jul 9 14:50:01 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jul 9 14:50:01 UTC 2024 I: Done submitting .buildinfo files. Tue Jul 9 14:50:01 UTC 2024 I: Removing signed bioawk_1.0-4+deb12u1_armhf.buildinfo.asc files: removed './b1/bioawk_1.0-4+deb12u1_armhf.buildinfo.asc' removed './b2/bioawk_1.0-4+deb12u1_armhf.buildinfo.asc'